Wall clock time and date at job start Sat Apr 11 2020 06:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47566 * 2 1 4 4 N 1.46903 * 109.46748 * 239.99482 * 2 1 3 5 5 C 1.46898 * 110.99673 * 85.00509 * 4 2 1 6 6 C 1.53006 * 109.47006 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.46995 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00229 * 90.00338 * 7 6 5 9 9 C 1.34774 * 120.00144 * 269.99868 * 7 6 5 10 10 O 1.21288 * 119.99888 * 0.02562 * 9 7 6 11 11 C 1.50698 * 120.00423 * 180.02562 * 9 7 6 12 12 S 1.81001 * 109.47440 * 180.02562 * 11 9 7 13 13 C 1.76200 * 99.99785 * 179.97438 * 12 11 9 14 14 H 1.07992 * 120.00193 * 0.02562 * 13 12 11 15 15 C 1.38804 * 119.99836 * 179.97438 * 13 12 11 16 16 N 1.31634 * 119.99829 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00093 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47101 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47638 * 119.99794 * 17 15 13 20 20 H 1.48513 * 109.46835 * 239.99868 * 17 15 13 21 21 C 1.50706 * 109.46748 * 120.00132 * 2 1 3 22 22 C 1.38213 * 120.01572 * 99.72868 * 21 2 1 23 23 C 1.38221 * 120.02579 * 179.71895 * 22 21 2 24 24 C 1.38268 * 120.05233 * 0.54800 * 23 22 21 25 25 C 1.38175 * 120.02484 * 359.72477 * 24 23 22 26 26 C 1.38436 * 120.01052 * 279.99233 * 21 2 1 27 27 F 1.35107 * 120.02639 * 0.03237 * 26 21 2 28 28 H 1.09004 * 109.46732 * 300.00617 * 1 2 3 29 29 H 1.08996 * 109.46768 * 60.00165 * 1 2 3 30 30 H 1.08995 * 109.47200 * 180.02562 * 1 2 3 31 31 H 1.00895 * 111.00497 * 321.04431 * 4 2 1 32 32 H 1.09001 * 109.47062 * 59.99745 * 5 4 2 33 33 H 1.08993 * 109.47084 * 299.99192 * 5 4 2 34 34 H 1.09001 * 109.46801 * 300.00064 * 6 5 4 35 35 H 1.09001 * 109.46998 * 59.99660 * 6 5 4 36 36 H 1.08999 * 109.47066 * 89.99163 * 8 7 6 37 37 H 1.08996 * 109.47662 * 209.99843 * 8 7 6 38 38 H 1.08998 * 109.46853 * 330.00155 * 8 7 6 39 39 H 1.09004 * 109.46903 * 300.00707 * 11 9 7 40 40 H 1.09002 * 109.47271 * 60.00093 * 11 9 7 41 41 H 0.96995 * 119.99785 * 180.02562 * 16 15 13 42 42 H 1.08006 * 119.98780 * 359.97438 * 22 21 2 43 43 H 1.08005 * 119.97581 * 180.26933 * 23 22 21 44 44 H 1.07999 * 119.98807 * 179.74544 * 24 23 22 45 45 H 1.07995 * 120.01581 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2224 -2.3469 6 6 2.5962 -0.5331 -3.5742 7 7 2.6582 0.3793 -4.7186 8 6 3.8807 1.1426 -4.9814 9 6 1.5908 0.5163 -5.5299 10 8 0.5785 -0.1154 -5.3121 11 6 1.6548 1.4545 -6.7075 12 16 0.0775 1.4177 -7.5947 13 6 0.4236 2.5703 -8.8817 14 1 1.3896 3.0504 -8.9313 15 6 -0.5452 2.8604 -9.8325 16 7 -1.7223 2.2741 -9.7728 17 14 -0.1782 4.0818 -11.1973 18 1 1.2060 4.5965 -11.0419 19 1 -0.3113 3.4078 -12.5138 20 1 -1.1379 5.2126 -11.1208 21 6 2.0323 -0.7105 1.2305 22 6 2.4534 -2.0242 1.1469 23 6 2.9195 -2.6742 2.2741 24 6 2.9545 -2.0148 3.4889 25 6 2.5288 -0.7032 3.5762 26 6 2.0669 -0.0492 2.4462 27 9 1.6499 1.2332 2.5304 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.4496 -1.4980 -1.4100 32 1 2.7589 1.0460 -2.1182 33 1 1.0871 0.6161 -2.5525 34 1 3.5916 -0.9266 -3.3682 35 1 1.9200 -1.3570 -3.8029 36 1 4.5344 0.5674 -5.6370 37 1 3.6235 2.0865 -5.4620 38 1 4.3938 1.3419 -4.0406 39 1 1.8495 2.4674 -6.3549 40 1 2.4562 1.1427 -7.3773 41 1 -2.3991 2.4766 -10.4374 42 1 2.4221 -2.5419 0.1995 43 1 3.2525 -3.6995 2.2070 44 1 3.3151 -2.5250 4.3699 45 1 2.5566 -0.1881 4.5250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567466690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:05 Heat of formation + Delta-G solvation = -53.446674 kcal Electronic energy + Delta-G solvation = -26057.387852 eV Core-core repulsion = 22115.567443 eV Total energy + Delta-G solvation = -3941.820409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.16508 -39.75840 -39.40992 -37.19057 -35.35648 -32.62463 -32.44152 -30.89501 -30.17115 -29.11103 -27.60864 -26.09768 -25.46190 -24.11968 -23.15884 -22.18151 -21.04869 -19.19361 -17.95205 -17.68423 -16.82816 -16.69676 -16.42225 -16.09109 -15.86991 -15.50729 -15.15178 -14.81821 -14.61737 -14.53150 -14.32731 -13.86704 -13.58366 -13.39696 -13.31449 -13.04696 -12.95297 -12.58459 -12.54721 -12.45171 -12.31166 -12.20285 -12.10144 -11.77773 -11.48160 -11.19666 -11.08705 -11.06525 -11.02849 -10.76066 -9.80968 -9.40914 -9.25808 -9.08644 -8.99469 -8.76373 -8.54782 -8.23915 -6.51661 -6.23153 -3.93710 0.83660 0.91865 2.87082 3.02259 3.20503 3.24085 3.27706 3.30011 3.54342 3.87685 4.03218 4.18984 4.32088 4.49877 4.63687 4.75927 4.81175 4.89606 4.95131 5.04611 5.09194 5.11829 5.13034 5.15182 5.35577 5.43055 5.44065 5.48422 5.57048 5.59271 5.69865 5.72296 5.78564 5.81074 5.86722 5.91116 5.94987 6.04126 6.10000 6.12155 6.54030 6.58320 6.74678 7.04349 7.50362 7.58772 8.34133 8.52829 9.22360 10.84355 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025525 B = 0.001818 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.695656 B =15396.621711 C =15667.066272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.125 3.875 3 H 0.090 0.910 4 N -0.679 5.679 5 C 0.043 3.957 6 C 0.121 3.879 7 N -0.624 5.624 8 C 0.081 3.919 9 C 0.532 3.468 10 O -0.516 6.516 11 C -0.150 4.150 12 S -0.063 6.063 13 C -0.534 4.534 14 H 0.073 0.927 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.102 4.102 22 C -0.069 4.069 23 C -0.133 4.133 24 C -0.098 4.098 25 C -0.156 4.156 26 C 0.097 3.903 27 F -0.140 7.140 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.345 0.655 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.139 0.861 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.768 -7.614 25.264 29.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.015 3.985 3 H 0.108 0.892 4 N -0.310 5.310 5 C -0.087 4.087 6 C -0.003 4.003 7 N -0.360 5.360 8 C -0.063 4.063 9 C 0.320 3.680 10 O -0.390 6.390 11 C -0.301 4.301 12 S 0.164 5.836 13 C -0.683 4.683 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.206 1.206 21 C -0.103 4.103 22 C -0.087 4.087 23 C -0.151 4.151 24 C -0.116 4.116 25 C -0.175 4.175 26 C 0.077 3.923 27 F -0.118 7.118 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.163 0.837 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.157 0.843 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.744 -8.429 25.641 29.435 hybrid contribution 0.491 1.962 -1.230 2.367 sum 12.235 -6.467 24.410 28.060 Atomic orbital electron populations 1.22461 0.95403 1.02804 1.03107 1.20273 0.93258 0.97374 0.87577 0.89198 1.60508 1.57109 1.09981 1.03428 1.22367 1.00770 0.95703 0.89873 1.21242 1.02373 0.92474 0.84173 1.47814 1.14641 1.45229 1.28345 1.21778 0.86455 0.96459 1.01595 1.20380 0.82274 0.82374 0.82935 1.90689 1.30154 1.45870 1.72304 1.23558 1.07884 1.00517 0.98119 1.85387 1.09750 1.58139 1.30344 1.22901 1.02850 1.28801 1.13713 0.90876 1.24999 0.94454 0.96497 0.97671 1.70029 1.04233 1.41049 1.34964 0.86114 0.78471 0.80172 0.80723 1.19604 1.20548 1.20570 1.19883 1.01809 0.95462 0.93164 1.20937 0.95803 0.92951 0.99015 1.21264 1.00644 1.00512 0.92658 1.21001 0.98697 0.93681 0.98232 1.21096 1.02574 0.96137 0.97725 1.17566 1.00814 0.79445 0.94434 1.91493 1.87871 1.35505 1.96954 0.91737 0.91493 0.91918 0.83653 0.90921 0.93948 0.90005 0.89943 0.92613 0.90674 0.91326 0.89266 0.89227 0.92237 0.84342 0.85422 0.85292 0.84966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.14 37.16 0.34 -1.36 16 2 C 0.13 1.18 2.52 -68.86 -0.17 1.01 16 3 H 0.09 0.93 7.60 -51.93 -0.39 0.54 16 4 N -0.68 -6.21 5.09 -107.95 -0.55 -6.76 16 5 C 0.04 0.47 5.81 -3.82 -0.02 0.44 16 6 C 0.12 1.39 5.67 -4.04 -0.02 1.37 16 7 N -0.62 -8.54 2.87 -181.57 -0.52 -9.06 16 8 C 0.08 0.82 10.24 59.85 0.61 1.43 16 9 C 0.53 9.96 7.69 -10.99 -0.08 9.87 16 10 O -0.52 -11.52 15.44 5.55 0.09 -11.44 16 11 C -0.15 -3.04 4.71 36.00 0.17 -2.87 16 12 S -0.06 -1.70 20.57 -107.50 -2.21 -3.92 16 13 C -0.53 -15.19 9.50 30.94 0.29 -14.90 16 14 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 15 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 16 N -0.87 -26.13 13.22 55.49 0.73 -25.39 16 17 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.10 -0.93 5.09 -104.56 -0.53 -1.46 16 22 C -0.07 -0.54 9.32 -39.60 -0.37 -0.91 16 23 C -0.13 -0.88 10.04 -39.58 -0.40 -1.28 16 24 C -0.10 -0.63 10.04 -39.59 -0.40 -1.03 16 25 C -0.16 -1.21 10.03 -39.51 -0.40 -1.61 16 26 C 0.10 0.92 7.24 -39.42 -0.29 0.64 16 27 F -0.14 -1.49 16.66 2.25 0.04 -1.45 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.70 7.45 -51.93 -0.39 0.32 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.34 2.95 8.00 -39.29 -0.31 2.63 16 32 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 33 H 0.04 0.57 7.44 -51.93 -0.39 0.18 16 34 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 35 H 0.08 1.07 7.42 -51.93 -0.39 0.69 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.78 6.44 -51.93 -0.33 0.45 16 38 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 39 H 0.09 1.67 7.40 -51.91 -0.38 1.29 16 40 H 0.09 1.69 8.11 -51.92 -0.42 1.26 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.14 0.96 6.84 -52.48 -0.36 0.60 16 43 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 44 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 45 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -34.02 392.89 -9.59 -43.61 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.70 Total: 0.80 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -1.36 Total: -8.66 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: -0.34 Total: -41.22 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.02 -9.59 -43.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567466690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.835 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds