Wall clock time and date at job start Sat Apr 11 2020 06:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47566 * 2 1 4 4 N 1.46903 * 109.46748 * 239.99482 * 2 1 3 5 5 C 1.46898 * 110.99673 * 85.00509 * 4 2 1 6 6 C 1.53006 * 109.47006 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.46995 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00229 * 90.00338 * 7 6 5 9 9 C 1.34774 * 120.00144 * 269.99868 * 7 6 5 10 10 O 1.21288 * 119.99888 * 0.02562 * 9 7 6 11 11 C 1.50698 * 120.00423 * 180.02562 * 9 7 6 12 12 S 1.81001 * 109.47440 * 180.02562 * 11 9 7 13 13 C 1.76200 * 99.99785 * 179.97438 * 12 11 9 14 14 H 1.07992 * 120.00193 * 0.02562 * 13 12 11 15 15 C 1.38804 * 119.99836 * 179.97438 * 13 12 11 16 16 N 1.31634 * 119.99829 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00093 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47101 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47638 * 119.99794 * 17 15 13 20 20 H 1.48513 * 109.46835 * 239.99868 * 17 15 13 21 21 C 1.50706 * 109.46748 * 120.00132 * 2 1 3 22 22 C 1.38213 * 120.01572 * 99.72868 * 21 2 1 23 23 C 1.38221 * 120.02579 * 179.71895 * 22 21 2 24 24 C 1.38268 * 120.05233 * 0.54800 * 23 22 21 25 25 C 1.38175 * 120.02484 * 359.72477 * 24 23 22 26 26 C 1.38436 * 120.01052 * 279.99233 * 21 2 1 27 27 F 1.35107 * 120.02639 * 0.03237 * 26 21 2 28 28 H 1.09004 * 109.46732 * 300.00617 * 1 2 3 29 29 H 1.08996 * 109.46768 * 60.00165 * 1 2 3 30 30 H 1.08995 * 109.47200 * 180.02562 * 1 2 3 31 31 H 1.00895 * 111.00497 * 321.04431 * 4 2 1 32 32 H 1.09001 * 109.47062 * 59.99745 * 5 4 2 33 33 H 1.08993 * 109.47084 * 299.99192 * 5 4 2 34 34 H 1.09001 * 109.46801 * 300.00064 * 6 5 4 35 35 H 1.09001 * 109.46998 * 59.99660 * 6 5 4 36 36 H 1.08999 * 109.47066 * 89.99163 * 8 7 6 37 37 H 1.08996 * 109.47662 * 209.99843 * 8 7 6 38 38 H 1.08998 * 109.46853 * 330.00155 * 8 7 6 39 39 H 1.09004 * 109.46903 * 300.00707 * 11 9 7 40 40 H 1.09002 * 109.47271 * 60.00093 * 11 9 7 41 41 H 0.96995 * 119.99785 * 180.02562 * 16 15 13 42 42 H 1.08006 * 119.98780 * 359.97438 * 22 21 2 43 43 H 1.08005 * 119.97581 * 180.26933 * 23 22 21 44 44 H 1.07999 * 119.98807 * 179.74544 * 24 23 22 45 45 H 1.07995 * 120.01581 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2224 -2.3469 6 6 2.5962 -0.5331 -3.5742 7 7 2.6582 0.3793 -4.7186 8 6 3.8807 1.1426 -4.9814 9 6 1.5908 0.5163 -5.5299 10 8 0.5785 -0.1154 -5.3121 11 6 1.6548 1.4545 -6.7075 12 16 0.0775 1.4177 -7.5947 13 6 0.4236 2.5703 -8.8817 14 1 1.3896 3.0504 -8.9313 15 6 -0.5452 2.8604 -9.8325 16 7 -1.7223 2.2741 -9.7728 17 14 -0.1782 4.0818 -11.1973 18 1 1.2060 4.5965 -11.0419 19 1 -0.3113 3.4078 -12.5138 20 1 -1.1379 5.2126 -11.1208 21 6 2.0323 -0.7105 1.2305 22 6 2.4534 -2.0242 1.1469 23 6 2.9195 -2.6742 2.2741 24 6 2.9545 -2.0148 3.4889 25 6 2.5288 -0.7032 3.5762 26 6 2.0669 -0.0492 2.4462 27 9 1.6499 1.2332 2.5304 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.4496 -1.4980 -1.4100 32 1 2.7589 1.0460 -2.1182 33 1 1.0871 0.6161 -2.5525 34 1 3.5916 -0.9266 -3.3682 35 1 1.9200 -1.3570 -3.8029 36 1 4.5344 0.5674 -5.6370 37 1 3.6235 2.0865 -5.4620 38 1 4.3938 1.3419 -4.0406 39 1 1.8495 2.4674 -6.3549 40 1 2.4562 1.1427 -7.3773 41 1 -2.3991 2.4766 -10.4374 42 1 2.4221 -2.5419 0.1995 43 1 3.2525 -3.6995 2.2070 44 1 3.3151 -2.5250 4.3699 45 1 2.5566 -0.1881 4.5250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567466690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:04 Heat of formation + Delta-G solvation = -74.322573 kcal Electronic energy + Delta-G solvation = -26058.293099 eV Core-core repulsion = 22115.567443 eV Total energy + Delta-G solvation = -3942.725656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.89365 -40.91247 -40.22873 -38.03032 -36.54812 -34.59634 -33.50044 -31.47165 -31.29596 -30.06879 -28.60962 -27.70521 -27.04263 -24.82094 -23.94639 -22.99381 -21.75371 -20.60903 -19.53821 -18.60136 -18.07624 -17.56526 -17.25326 -17.13679 -16.89237 -16.67043 -16.54342 -16.18145 -15.90722 -15.37419 -15.22253 -14.99301 -14.59696 -14.48539 -14.31223 -14.18329 -14.01230 -13.86504 -13.55996 -13.29243 -13.17382 -13.15079 -13.10583 -12.93933 -12.85132 -12.73163 -12.60857 -12.15224 -12.12447 -11.73995 -11.69915 -11.16883 -10.91986 -10.27630 -9.84758 -9.75707 -9.66936 -9.47511 -8.68487 -8.35988 -6.14193 0.23860 0.34838 1.25069 1.40609 1.45211 1.55463 1.56938 2.07520 2.26371 2.70155 2.98273 3.03567 3.27013 3.38110 3.62203 3.72622 3.88684 4.00565 4.05361 4.10932 4.18820 4.20754 4.25082 4.34034 4.43502 4.47570 4.49944 4.51360 4.61511 4.65938 4.71484 4.84916 4.93204 4.96190 5.00930 5.09762 5.17090 5.27382 5.41006 5.41499 5.53781 5.56194 5.88514 6.02302 6.18795 6.23616 6.28026 7.05422 7.13211 8.73527 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025525 B = 0.001818 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.695656 B =15396.621711 C =15667.066272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.130 3.870 3 H 0.077 0.923 4 N -0.666 5.666 5 C 0.054 3.946 6 C 0.123 3.877 7 N -0.610 5.610 8 C 0.071 3.929 9 C 0.529 3.471 10 O -0.564 6.564 11 C -0.124 4.124 12 S -0.154 6.154 13 C -0.545 4.545 14 H 0.083 0.917 15 C 0.013 3.987 16 N -0.911 5.911 17 Si 0.999 3.001 18 H -0.256 1.256 19 H -0.273 1.273 20 H -0.274 1.274 21 C -0.114 4.114 22 C -0.076 4.076 23 C -0.130 4.130 24 C -0.095 4.095 25 C -0.162 4.162 26 C 0.071 3.929 27 F -0.154 7.154 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.349 0.651 32 H 0.081 0.919 33 H 0.010 0.990 34 H 0.115 0.885 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.271 0.729 42 H 0.146 0.854 43 H 0.153 0.847 44 H 0.158 0.842 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.812 -7.824 26.146 31.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.019 3.981 3 H 0.096 0.904 4 N -0.298 5.298 5 C -0.077 4.077 6 C 0.000 4.000 7 N -0.344 5.344 8 C -0.071 4.071 9 C 0.317 3.683 10 O -0.442 6.442 11 C -0.275 4.275 12 S 0.073 5.927 13 C -0.693 4.693 14 H 0.101 0.899 15 C -0.192 4.192 16 N -0.548 5.548 17 Si 0.821 3.179 18 H -0.179 1.179 19 H -0.199 1.199 20 H -0.200 1.200 21 C -0.116 4.116 22 C -0.094 4.094 23 C -0.148 4.148 24 C -0.113 4.113 25 C -0.180 4.180 26 C 0.051 3.949 27 F -0.133 7.133 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.168 0.832 32 H 0.099 0.901 33 H 0.029 0.971 34 H 0.133 0.867 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.164 0.836 43 H 0.171 0.829 44 H 0.176 0.824 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 14.846 -8.640 26.558 31.628 hybrid contribution -0.345 1.947 -1.345 2.392 sum 14.500 -6.692 25.213 29.845 Atomic orbital electron populations 1.22404 0.95837 1.02900 1.02138 1.20171 0.92882 0.96951 0.88048 0.90444 1.60525 1.56992 1.09573 1.02663 1.22204 0.99128 0.96064 0.90257 1.21385 1.03792 0.91538 0.83275 1.47807 1.14224 1.44859 1.27503 1.22105 0.85038 0.96124 1.03812 1.20163 0.82989 0.81926 0.83219 1.90674 1.32274 1.47740 1.73511 1.23382 1.03589 1.02224 0.98327 1.85567 1.16106 1.58818 1.32171 1.23231 1.03386 1.28786 1.13873 0.89894 1.26142 0.94052 0.98526 1.00489 1.70192 1.05507 1.42873 1.36222 0.84898 0.78980 0.77210 0.76815 1.17944 1.19876 1.19983 1.19863 1.02858 0.96166 0.92675 1.21109 0.95871 0.92446 1.00015 1.21608 0.99447 1.01570 0.92171 1.21378 0.97510 0.93088 0.99283 1.21364 1.02130 0.96844 0.97696 1.17881 1.02290 0.79271 0.95414 1.91451 1.88258 1.36483 1.97061 0.91958 0.93110 0.91270 0.83179 0.90095 0.97142 0.86671 0.91664 0.90806 0.90838 0.88243 0.87545 0.87444 0.91999 0.83626 0.82914 0.82446 0.83652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.47 9.14 71.98 0.66 -2.81 16 2 C 0.13 2.47 2.52 44.17 0.11 2.58 16 3 H 0.08 1.66 7.60 -2.39 -0.02 1.64 16 4 N -0.67 -11.78 5.09 -495.44 -2.52 -14.30 16 5 C 0.05 1.14 5.81 86.31 0.50 1.64 16 6 C 0.12 2.65 5.67 86.38 0.49 3.14 16 7 N -0.61 -15.73 2.87 -846.76 -2.43 -18.16 16 8 C 0.07 1.21 10.24 127.77 1.31 2.52 16 9 C 0.53 19.83 7.69 87.66 0.67 20.51 16 10 O -0.56 -26.12 15.44 -3.05 -0.05 -26.17 16 11 C -0.12 -4.98 4.71 71.24 0.34 -4.65 16 12 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 13 C -0.54 -31.23 9.50 67.96 0.65 -30.58 16 14 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 15 C 0.01 0.72 5.49 84.86 0.47 1.18 16 16 N -0.91 -56.21 13.22 21.65 0.29 -55.93 16 17 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 18 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 C -0.11 -2.03 5.09 -19.82 -0.10 -2.13 16 22 C -0.08 -1.07 9.32 22.26 0.21 -0.86 16 23 C -0.13 -1.38 10.04 22.27 0.22 -1.15 16 24 C -0.09 -0.97 10.04 22.26 0.22 -0.75 16 25 C -0.16 -2.26 10.03 22.31 0.22 -2.04 16 26 C 0.07 1.33 7.24 22.38 0.16 1.49 16 27 F -0.15 -3.37 16.66 44.97 0.75 -2.62 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.16 7.45 -2.39 -0.02 1.14 16 30 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 31 H 0.35 5.81 8.00 -89.70 -0.72 5.09 16 32 H 0.08 1.59 8.06 -2.39 -0.02 1.57 16 33 H 0.01 0.29 7.44 -2.39 -0.02 0.27 16 34 H 0.12 1.78 8.07 -2.39 -0.02 1.76 16 35 H 0.06 1.68 7.42 -2.39 -0.02 1.66 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.32 6.44 -2.39 -0.02 1.30 16 38 H 0.10 1.15 8.07 -2.39 -0.02 1.13 16 39 H 0.11 3.88 7.40 -2.39 -0.02 3.86 16 40 H 0.11 3.90 8.11 -2.39 -0.02 3.88 16 41 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 42 H 0.15 1.75 6.84 -2.91 -0.02 1.73 16 43 H 0.15 0.83 8.06 -2.91 -0.02 0.80 16 44 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 45 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -77.38 392.89 3.31 -74.07 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.28 Total: 19.09 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 6.13 Total: -11.90 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -4.67 Total: -88.39 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.05 Total: -26.17 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.75 Total: -2.62 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -77.38 3.31 -74.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567466690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.253 kcal (2) G-P(sol) polarization free energy of solvation -77.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds