Wall clock time and date at job start Sat Apr 11 2020 06:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 N 1.46898 * 109.47206 * 184.99822 * 4 2 1 6 6 C 1.46898 * 110.99995 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.47178 * 180.02562 * 6 5 4 8 8 C 1.38229 * 119.99638 * 269.72749 * 7 6 5 9 9 C 1.38242 * 119.99592 * 179.76315 * 8 7 6 10 10 C 1.38231 * 119.99995 * 0.48771 * 9 8 7 11 11 C 1.50701 * 120.00391 * 179.76749 * 10 9 8 12 12 F 1.39900 * 109.46841 * 270.02597 * 11 10 9 13 13 C 1.38244 * 120.00064 * 359.78618 * 10 9 8 14 14 C 1.38232 * 119.99604 * 359.95701 * 13 10 9 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46793 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47282 * 119.99523 * 24 22 20 27 27 H 1.48500 * 109.47237 * 240.00020 * 24 22 20 28 28 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 30 30 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 31 31 H 1.08997 * 109.46872 * 304.99946 * 4 2 1 32 32 H 1.08994 * 109.47319 * 64.99922 * 4 2 1 33 33 H 1.00901 * 111.00043 * 56.04169 * 5 4 2 34 34 H 1.09002 * 109.47134 * 300.00065 * 6 5 4 35 35 H 1.08996 * 109.47008 * 60.00256 * 6 5 4 36 36 H 1.07998 * 120.00490 * 359.97438 * 8 7 6 37 37 H 1.08002 * 120.00135 * 180.24937 * 9 8 7 38 38 H 1.09010 * 109.46717 * 30.01829 * 11 10 9 39 39 H 1.08991 * 109.47368 * 150.01736 * 11 10 9 40 40 H 1.07993 * 119.99682 * 179.97438 * 13 10 9 41 41 H 1.07997 * 119.99833 * 179.97438 * 14 13 10 42 42 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 43 43 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 44 44 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 45 45 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5040 -0.8265 -1.1906 6 6 4.0302 -1.5155 -2.3765 7 6 5.5316 -1.6051 -2.2805 8 6 6.3190 -0.5988 -2.8079 9 6 7.6961 -0.6786 -2.7155 10 6 8.2858 -1.7695 -2.1048 11 6 9.7870 -1.8591 -2.0088 12 9 10.2882 -2.5152 -3.1382 13 6 7.4983 -2.7786 -1.5825 14 6 6.1213 -2.6962 -1.6701 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 16 2.6984 0.4307 4.9762 20 6 3.2947 -0.6363 6.2451 21 1 3.5050 -1.6725 6.0248 22 6 3.4953 -0.1451 7.5277 23 7 3.2404 1.1182 7.7959 24 14 4.1282 -1.2762 8.8729 25 1 4.3356 -2.6378 8.3176 26 1 5.4161 -0.7524 9.3947 27 1 3.1355 -1.3377 9.9756 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6054 -1.7196 -1.2954 32 1 1.7517 -0.1581 -2.1370 33 1 3.7996 -1.2882 -0.3436 34 1 3.6094 -2.5196 -2.4299 35 1 3.7557 -0.9584 -3.2721 36 1 5.8585 0.2513 -3.2889 37 1 8.3113 0.1095 -3.1239 38 1 10.2082 -0.8551 -1.9551 39 1 10.0612 -2.4164 -1.1132 40 1 7.9591 -3.6311 -1.1058 41 1 5.5061 -3.4847 -1.2625 42 1 2.2492 -1.6319 1.1524 43 1 1.9698 -1.5528 3.8298 44 1 3.6437 -1.1227 3.4038 45 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568982220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:08 Heat of formation + Delta-G solvation = -72.824032 kcal Electronic energy + Delta-G solvation = -25715.431314 eV Core-core repulsion = 21772.770640 eV Total energy + Delta-G solvation = -3942.660674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -47.95755 -39.83939 -39.38282 -37.06248 -34.81901 -32.54150 -32.42441 -31.29161 -31.23691 -28.57338 -28.11517 -25.54368 -25.44272 -23.55344 -23.10917 -21.63311 -21.04283 -20.28500 -17.92110 -17.14882 -16.73068 -16.46736 -16.34604 -16.16806 -15.76330 -15.38149 -15.36225 -14.81449 -14.80648 -14.71867 -14.36784 -14.05931 -13.77080 -13.49673 -13.24993 -12.97894 -12.84198 -12.67066 -12.49313 -12.37255 -12.11009 -11.96813 -11.64665 -11.59723 -11.24439 -11.17618 -11.07372 -11.01799 -10.94912 -10.75144 -9.80265 -9.36026 -9.24693 -9.15587 -9.07810 -8.91797 -8.70684 -8.22264 -6.49204 -6.21722 -3.91845 0.85855 1.09235 3.03696 3.12515 3.21207 3.27372 3.29515 3.33068 3.71281 3.96482 4.13125 4.20369 4.30910 4.47892 4.54687 4.58365 4.69342 4.71933 4.94195 5.02728 5.10391 5.13271 5.14165 5.18495 5.27005 5.29386 5.34986 5.40375 5.40991 5.59206 5.61088 5.67713 5.71803 5.89228 6.00510 6.06110 6.13446 6.15515 6.15871 6.26072 6.58061 6.64963 6.69490 7.02013 7.59700 7.70465 8.35323 8.64569 9.23723 10.85750 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008275 B = 0.002485 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3382.678119 B =11262.913473 C =14000.803357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.096 0.904 4 C 0.053 3.947 5 N -0.682 5.682 6 C 0.097 3.903 7 C -0.073 4.073 8 C -0.098 4.098 9 C -0.098 4.098 10 C -0.137 4.137 11 C 0.105 3.895 12 F -0.213 7.213 13 C -0.097 4.097 14 C -0.115 4.115 15 N -0.735 5.735 16 C 0.535 3.465 17 O -0.515 6.515 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.035 0.965 32 H 0.086 0.914 33 H 0.346 0.654 34 H 0.040 0.960 35 H 0.082 0.918 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.392 0.608 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.883 -8.823 -24.574 26.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.040 3.960 3 H 0.114 0.886 4 C -0.076 4.076 5 N -0.314 5.314 6 C -0.032 4.032 7 C -0.073 4.073 8 C -0.116 4.116 9 C -0.116 4.116 10 C -0.138 4.138 11 C 0.050 3.950 12 F -0.194 7.194 13 C -0.115 4.115 14 C -0.134 4.134 15 N -0.389 5.389 16 C 0.321 3.679 17 O -0.388 6.388 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.165 0.835 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.225 0.775 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.502 -6.082 -24.637 25.773 hybrid contribution 0.592 -3.509 0.990 3.693 sum 5.093 -9.590 -23.648 26.022 Atomic orbital electron populations 1.22166 0.95157 1.01972 1.02910 1.20928 0.93599 0.98402 0.83108 0.88568 1.22303 0.87423 0.99303 0.98616 1.60425 1.09682 1.56694 1.04636 1.20908 0.90309 0.97209 0.94726 1.19837 0.95227 0.94458 0.97806 1.21032 0.93164 0.98141 0.99288 1.21061 0.95092 0.97365 0.98098 1.20225 0.95493 0.96377 1.01672 1.20818 0.89833 0.98276 0.86024 1.92806 1.88449 1.83467 1.54727 1.21013 0.93705 0.97987 0.98785 1.21048 0.94763 0.98112 0.99448 1.46049 1.69576 1.13489 1.09810 1.20250 0.76732 0.87208 0.83673 1.90700 1.48055 1.15724 1.84358 1.23533 1.03602 1.04805 0.98492 1.85409 1.86507 1.12899 0.98480 1.22903 1.50997 0.98143 0.96223 0.90947 1.24995 0.95122 0.95538 0.97982 1.70030 1.45660 1.13230 1.21357 0.86121 0.78522 0.80128 0.80743 1.19644 1.20556 1.20584 0.92717 0.91337 0.91803 0.94690 0.89523 0.83455 0.94230 0.89927 0.85503 0.85720 0.89777 0.89775 0.85735 0.85928 0.77477 0.89399 0.89339 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.48 37.16 0.35 -1.34 16 2 C 0.14 1.62 2.88 -67.93 -0.20 1.42 16 3 H 0.10 1.35 7.58 -51.93 -0.39 0.95 16 4 C 0.05 0.43 5.30 -3.82 -0.02 0.41 16 5 N -0.68 -6.15 6.48 -115.06 -0.75 -6.90 16 6 C 0.10 0.73 5.81 -4.97 -0.03 0.70 16 7 C -0.07 -0.63 5.39 -104.62 -0.56 -1.20 16 8 C -0.10 -0.86 9.70 -39.58 -0.38 -1.25 16 9 C -0.10 -0.85 9.70 -39.58 -0.38 -1.23 16 10 C -0.14 -1.20 5.60 -104.62 -0.59 -1.78 16 11 C 0.11 0.76 7.67 36.01 0.28 1.03 16 12 F -0.21 -2.08 17.34 2.25 0.04 -2.04 16 13 C -0.10 -0.83 9.70 -39.58 -0.38 -1.22 16 14 C -0.12 -0.98 9.70 -39.59 -0.38 -1.36 16 15 N -0.73 -9.32 4.36 -53.80 -0.23 -9.55 16 16 C 0.54 9.76 7.81 -10.98 -0.09 9.68 16 17 O -0.51 -11.55 15.53 5.55 0.09 -11.47 16 18 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.53 -15.18 9.50 30.94 0.29 -14.88 16 21 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 24 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.35 3.29 7.57 -39.29 -0.30 2.99 16 34 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 35 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 36 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.08 0.47 8.09 -51.92 -0.42 0.05 16 39 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.39 3.85 8.15 -40.82 -0.33 3.52 16 43 H 0.09 1.62 8.14 -51.91 -0.42 1.19 16 44 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 399.26 15.07 6.02 6.02 Total: -1.00 -35.08 399.26 -10.21 -45.29 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.90 Total: 3.44 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -1.97 Total: -11.87 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: -0.25 Total: -41.87 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.08 -10.21 -45.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568982220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.536 kcal (2) G-P(sol) polarization free energy of solvation -35.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds