Wall clock time and date at job start Sat Apr 11 2020 06:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 N 1.46898 * 109.47206 * 184.99822 * 4 2 1 6 6 C 1.46898 * 110.99995 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.47178 * 180.02562 * 6 5 4 8 8 C 1.38229 * 119.99638 * 269.72749 * 7 6 5 9 9 C 1.38242 * 119.99592 * 179.76315 * 8 7 6 10 10 C 1.38231 * 119.99995 * 0.48771 * 9 8 7 11 11 C 1.50701 * 120.00391 * 179.76749 * 10 9 8 12 12 F 1.39900 * 109.46841 * 270.02597 * 11 10 9 13 13 C 1.38244 * 120.00064 * 359.78618 * 10 9 8 14 14 C 1.38232 * 119.99604 * 359.95701 * 13 10 9 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46793 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47282 * 119.99523 * 24 22 20 27 27 H 1.48500 * 109.47237 * 240.00020 * 24 22 20 28 28 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 30 30 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 31 31 H 1.08997 * 109.46872 * 304.99946 * 4 2 1 32 32 H 1.08994 * 109.47319 * 64.99922 * 4 2 1 33 33 H 1.00901 * 111.00043 * 56.04169 * 5 4 2 34 34 H 1.09002 * 109.47134 * 300.00065 * 6 5 4 35 35 H 1.08996 * 109.47008 * 60.00256 * 6 5 4 36 36 H 1.07998 * 120.00490 * 359.97438 * 8 7 6 37 37 H 1.08002 * 120.00135 * 180.24937 * 9 8 7 38 38 H 1.09010 * 109.46717 * 30.01829 * 11 10 9 39 39 H 1.08991 * 109.47368 * 150.01736 * 11 10 9 40 40 H 1.07993 * 119.99682 * 179.97438 * 13 10 9 41 41 H 1.07997 * 119.99833 * 179.97438 * 14 13 10 42 42 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 43 43 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 44 44 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 45 45 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5040 -0.8265 -1.1906 6 6 4.0302 -1.5155 -2.3765 7 6 5.5316 -1.6051 -2.2805 8 6 6.3190 -0.5988 -2.8079 9 6 7.6961 -0.6786 -2.7155 10 6 8.2858 -1.7695 -2.1048 11 6 9.7870 -1.8591 -2.0088 12 9 10.2882 -2.5152 -3.1382 13 6 7.4983 -2.7786 -1.5825 14 6 6.1213 -2.6962 -1.6701 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 16 2.6984 0.4307 4.9762 20 6 3.2947 -0.6363 6.2451 21 1 3.5050 -1.6725 6.0248 22 6 3.4953 -0.1451 7.5277 23 7 3.2404 1.1182 7.7959 24 14 4.1282 -1.2762 8.8729 25 1 4.3356 -2.6378 8.3176 26 1 5.4161 -0.7524 9.3947 27 1 3.1355 -1.3377 9.9756 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6054 -1.7196 -1.2954 32 1 1.7517 -0.1581 -2.1370 33 1 3.7996 -1.2882 -0.3436 34 1 3.6094 -2.5196 -2.4299 35 1 3.7557 -0.9584 -3.2721 36 1 5.8585 0.2513 -3.2889 37 1 8.3113 0.1095 -3.1239 38 1 10.2082 -0.8551 -1.9551 39 1 10.0612 -2.4164 -1.1132 40 1 7.9591 -3.6311 -1.1058 41 1 5.5061 -3.4847 -1.2625 42 1 2.2492 -1.6319 1.1524 43 1 1.9698 -1.5528 3.8298 44 1 3.6437 -1.1227 3.4038 45 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568982220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:07 Heat of formation + Delta-G solvation = -96.043921 kcal Electronic energy + Delta-G solvation = -25716.438204 eV Core-core repulsion = 21772.770640 eV Total energy + Delta-G solvation = -3943.667564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.61970 -40.82157 -40.32296 -37.99782 -35.73421 -34.57893 -33.39607 -32.30025 -31.89323 -29.98824 -28.75216 -27.65427 -26.18127 -24.18760 -23.72447 -22.66835 -21.69498 -21.50280 -19.86155 -18.09824 -17.70632 -17.32398 -17.20913 -16.87927 -16.84223 -16.61400 -16.44441 -16.11486 -15.88372 -15.75912 -15.45231 -14.97974 -14.77062 -14.56234 -14.36305 -14.18244 -13.97267 -13.57426 -13.43467 -13.20008 -13.15229 -12.96652 -12.91245 -12.78918 -12.63294 -12.53380 -12.18543 -11.96759 -11.78118 -11.71184 -11.65302 -11.15430 -10.88754 -10.25566 -10.10766 -9.87243 -9.78232 -9.33812 -8.65535 -8.34241 -6.11890 0.23101 0.46365 1.28164 1.41615 1.48149 1.58950 1.66874 2.26517 2.32246 2.66292 2.99965 3.27602 3.35216 3.55321 3.76161 3.85211 3.90326 4.00790 4.03659 4.10581 4.15822 4.22377 4.29454 4.38474 4.47554 4.51367 4.52093 4.62957 4.70214 4.74139 4.74408 4.77778 4.79981 5.02851 5.10414 5.12336 5.28673 5.39112 5.42466 5.53892 5.56523 5.63945 5.97491 6.06138 6.20506 6.34204 6.53145 7.07192 7.30146 8.75240 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008275 B = 0.002485 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3382.678119 B =11262.913473 C =14000.803357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 H 0.064 0.936 4 C 0.064 3.936 5 N -0.699 5.699 6 C 0.102 3.898 7 C -0.082 4.082 8 C -0.112 4.112 9 C -0.111 4.111 10 C -0.151 4.151 11 C 0.102 3.898 12 F -0.229 7.229 13 C -0.110 4.110 14 C -0.123 4.123 15 N -0.707 5.707 16 C 0.537 3.463 17 O -0.565 6.565 18 C -0.129 4.129 19 S -0.153 6.153 20 C -0.544 4.544 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.342 0.658 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.411 0.589 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.052 -11.511 -25.624 28.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.065 4.065 5 N -0.331 5.331 6 C -0.026 4.026 7 C -0.083 4.083 8 C -0.131 4.131 9 C -0.129 4.129 10 C -0.151 4.151 11 C 0.047 3.953 12 F -0.210 7.210 13 C -0.128 4.128 14 C -0.142 4.142 15 N -0.361 5.361 16 C 0.323 3.677 17 O -0.443 6.443 18 C -0.280 4.280 19 S 0.074 5.926 20 C -0.692 4.692 21 H 0.101 0.899 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.821 3.179 25 H -0.180 1.180 26 H -0.200 1.200 27 H -0.200 1.200 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.161 0.839 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.247 0.753 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.667 -8.819 -25.745 27.611 hybrid contribution 0.520 -2.680 1.172 2.971 sum 5.188 -11.499 -24.573 27.622 Atomic orbital electron populations 1.22109 0.94204 1.03023 1.02320 1.21054 0.94303 0.97176 0.83523 0.91750 1.22226 0.87022 1.00263 0.96959 1.60408 1.10233 1.57417 1.05019 1.20901 0.89446 0.98009 0.94204 1.20048 0.96025 0.94455 0.97743 1.21253 0.93489 0.98650 0.99687 1.21317 0.95440 0.97897 0.98254 1.20479 0.96390 0.96519 1.01759 1.21012 0.89073 0.99325 0.85882 1.92770 1.88603 1.83887 1.55755 1.21304 0.94103 0.98465 0.98923 1.21302 0.94998 0.98529 0.99342 1.45779 1.67606 1.14173 1.08567 1.19992 0.76568 0.86531 0.84613 1.90691 1.50585 1.17822 1.85172 1.23371 1.05425 1.03117 0.96117 1.85605 1.86918 1.17423 1.02609 1.23226 1.50875 0.98409 0.96642 0.89949 1.26139 0.95104 0.97216 1.00814 1.70195 1.46991 1.15527 1.22142 0.84902 0.77822 0.78233 0.76960 1.17959 1.19955 1.19980 0.90755 0.94843 0.89543 0.92266 0.88042 0.83943 0.92663 0.89229 0.84874 0.84565 0.88222 0.88194 0.84452 0.84374 0.75264 0.87368 0.87400 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.48 71.98 0.68 -2.32 16 2 C 0.14 3.00 2.88 44.99 0.13 3.13 16 3 H 0.06 1.81 7.58 -2.38 -0.02 1.79 16 4 C 0.06 0.84 5.30 86.31 0.46 1.30 16 5 N -0.70 -10.90 6.48 -517.93 -3.36 -14.25 16 6 C 0.10 1.27 5.81 85.56 0.50 1.77 16 7 C -0.08 -1.30 5.39 -19.87 -0.11 -1.41 16 8 C -0.11 -1.88 9.70 22.27 0.22 -1.67 16 9 C -0.11 -1.85 9.70 22.27 0.22 -1.63 16 10 C -0.15 -2.51 5.60 -19.86 -0.11 -2.62 16 11 C 0.10 1.36 7.67 71.24 0.55 1.90 16 12 F -0.23 -4.31 17.34 44.97 0.78 -3.53 16 13 C -0.11 -1.76 9.70 22.27 0.22 -1.54 16 14 C -0.12 -1.88 9.70 22.27 0.22 -1.67 16 15 N -0.71 -16.73 4.36 -442.52 -1.93 -18.66 16 16 C 0.54 19.48 7.81 87.66 0.68 20.16 16 17 O -0.56 -26.20 15.53 -3.04 -0.05 -26.24 16 18 C -0.13 -5.05 6.16 71.24 0.44 -4.61 16 19 S -0.15 -8.49 20.57 -56.49 -1.16 -9.66 16 20 C -0.54 -30.98 9.50 67.95 0.65 -30.33 16 21 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 22 C 0.01 0.67 5.49 84.86 0.47 1.14 16 23 N -0.91 -56.18 13.22 21.65 0.29 -55.90 16 24 Si 1.00 43.49 29.55 68.60 2.03 45.52 16 25 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.34 5.66 7.57 -89.69 -0.68 4.98 16 34 H 0.06 0.52 8.08 -2.39 -0.02 0.51 16 35 H 0.09 0.99 8.08 -2.39 -0.02 0.97 16 36 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 38 H 0.10 0.99 8.09 -2.38 -0.02 0.97 16 39 H 0.10 0.99 8.08 -2.39 -0.02 0.97 16 40 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 41 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.41 6.81 8.15 -92.71 -0.76 6.06 16 43 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 44 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 45 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -79.44 399.26 1.36 -78.08 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -0.43 Total: 23.04 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 5.19 Total: -18.40 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -5.00 Total: -88.81 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.05 Total: -26.24 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.78 Total: -3.53 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.66 kcal Total: -79.44 1.36 -78.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568982220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.968 kcal (2) G-P(sol) polarization free energy of solvation -79.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds