Wall clock time and date at job start Sat Apr 11 2020 06:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09011 * 109.47068 * 2 1 4 4 N 1.46900 * 109.47539 * 240.00020 * 2 1 3 5 5 C 1.46911 * 110.99783 * 84.99465 * 4 2 1 6 6 C 1.50702 * 109.46858 * 180.02562 * 5 4 2 7 7 O 1.21293 * 119.99877 * 0.02562 * 6 5 4 8 8 N 1.34769 * 119.99989 * 180.02562 * 6 5 4 9 9 C 1.37095 * 120.00466 * 180.02562 * 8 6 5 10 10 H 1.08001 * 119.99844 * 359.97438 * 9 8 6 11 11 C 1.38947 * 120.00575 * 179.97438 * 9 8 6 12 12 N 1.31411 * 120.00018 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00289 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46663 * 89.99860 * 13 11 9 15 15 H 1.48497 * 109.47224 * 209.99986 * 13 11 9 16 16 H 1.48497 * 109.46920 * 330.00205 * 13 11 9 17 17 C 1.52999 * 109.47400 * 119.99645 * 2 1 3 18 18 H 1.08996 * 109.47469 * 185.00063 * 17 2 1 19 19 C 1.53003 * 109.46917 * 65.00644 * 17 2 1 20 20 N 1.46497 * 109.47017 * 305.00717 * 17 2 1 21 21 C 1.34780 * 119.99566 * 205.00005 * 20 17 2 22 22 O 1.21280 * 120.00423 * 359.97438 * 21 20 17 23 23 C 1.50701 * 119.99795 * 180.02562 * 21 20 17 24 24 C 1.50703 * 109.47064 * 179.97438 * 23 21 20 25 25 C 1.33642 * 126.03857 * 89.71540 * 24 23 21 26 26 N 1.31780 * 114.49786 * 179.78775 * 25 24 23 27 27 C 1.29027 * 117.12590 * 0.52267 * 26 25 24 28 28 S 1.70975 * 110.16686 * 359.71210 * 27 26 25 29 29 H 1.08994 * 109.47437 * 299.99531 * 1 2 3 30 30 H 1.09006 * 109.47086 * 60.00373 * 1 2 3 31 31 H 1.09007 * 109.46589 * 179.97438 * 1 2 3 32 32 H 1.00901 * 110.99951 * 321.04586 * 4 2 1 33 33 H 1.08995 * 109.47116 * 299.99865 * 5 4 2 34 34 H 1.09000 * 109.46597 * 60.00842 * 5 4 2 35 35 H 0.97008 * 120.00275 * 359.97438 * 8 6 5 36 36 H 0.97001 * 120.00574 * 180.02562 * 12 11 9 37 37 H 1.09000 * 109.47614 * 59.99489 * 19 17 2 38 38 H 1.08998 * 109.47302 * 180.02562 * 19 17 2 39 39 H 1.09006 * 109.46570 * 299.99863 * 19 17 2 40 40 H 0.96995 * 120.00423 * 24.99311 * 20 17 2 41 41 H 1.09002 * 109.47060 * 299.99722 * 23 21 20 42 42 H 1.09001 * 109.47380 * 59.99809 * 23 21 20 43 43 H 1.08001 * 122.74884 * 359.97348 * 25 24 23 44 44 H 1.08003 * 124.91367 * 179.68248 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0824 0.2227 -2.3469 6 6 2.5874 -0.5217 -3.5561 7 8 2.8670 -1.6988 -3.4704 8 7 2.7282 0.1205 -4.7325 9 6 3.1871 -0.5567 -5.8326 10 1 3.4361 -1.6048 -5.7564 11 6 3.3318 0.1053 -7.0456 12 7 3.0284 1.3805 -7.1386 13 14 3.9578 -0.8174 -8.5444 14 1 2.8084 -1.3997 -9.2828 15 1 4.6924 0.1198 -9.4316 16 1 4.8699 -1.9058 -8.1103 17 6 2.0400 -0.7212 1.2493 18 1 3.1263 -0.6442 1.2952 19 6 1.6354 -2.1954 1.1880 20 7 1.4558 -0.1036 2.4423 21 6 2.0912 -0.1937 3.6275 22 8 3.1464 -0.7863 3.7064 23 6 1.4900 0.4411 4.8550 24 6 2.3900 0.1970 6.0388 25 6 3.3935 0.9838 6.4390 26 7 4.0315 0.5539 7.5089 27 6 3.6289 -0.5569 8.0274 28 16 2.3101 -1.1799 7.1352 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0278 -0.0005 32 1 1.4496 -1.4979 -1.4100 33 1 1.0870 0.6163 -2.5526 34 1 2.7588 1.0463 -2.1182 35 1 2.5042 1.0619 -4.8011 36 1 3.1290 1.8426 -7.9855 37 1 2.0699 -2.6550 0.3002 38 1 1.9983 -2.7092 2.0781 39 1 0.5490 -2.2724 1.1421 40 1 0.6117 0.3702 2.3794 41 1 1.3835 1.5139 4.6941 42 1 0.5103 0.0036 5.0475 43 1 3.6577 1.8985 5.9292 44 1 4.0625 -1.0255 8.8985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570610364.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:26 Heat of formation + Delta-G solvation = -25.512028 kcal Electronic energy + Delta-G solvation = -26136.690231 eV Core-core repulsion = 22216.001121 eV Total energy + Delta-G solvation = -3920.689110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.42619 -39.66629 -38.50335 -37.38195 -34.53337 -33.82224 -33.23860 -31.32501 -30.87720 -29.19941 -28.01410 -26.43079 -25.20081 -24.51509 -23.65344 -21.20029 -20.32054 -19.91329 -19.35144 -18.42053 -17.95091 -17.56659 -16.48023 -15.97821 -15.77996 -15.56986 -15.29289 -14.85043 -14.62120 -14.51169 -14.24893 -14.03308 -13.93427 -13.81290 -13.36162 -13.27830 -13.21019 -12.66821 -12.35700 -12.27482 -12.20137 -11.93144 -11.58360 -11.55881 -11.44585 -11.06273 -10.99698 -10.87771 -10.40176 -10.23326 -10.20236 -9.97981 -9.56693 -9.52325 -9.28027 -9.23572 -8.50050 -8.10980 -7.97610 -6.43145 -3.83953 0.35577 1.02543 1.41059 2.38348 2.49383 2.95354 3.17017 3.25946 3.32210 3.88816 3.98504 4.08835 4.25882 4.31998 4.53067 4.58981 4.71006 4.76616 4.90653 4.96669 5.04899 5.15235 5.24333 5.31194 5.33242 5.34879 5.57557 5.63257 5.73523 5.80666 5.81178 5.92068 5.96057 6.06195 6.23508 6.31278 6.40062 7.11880 7.26033 7.37679 7.54065 7.58695 7.99046 8.04772 8.59495 9.16534 9.52565 10.03853 10.74527 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.029624 B = 0.001651 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.950154 B =16954.628277 C =17073.461324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.078 3.922 3 H 0.082 0.918 4 N -0.658 5.658 5 C 0.051 3.949 6 C 0.440 3.560 7 O -0.583 6.583 8 N -0.563 5.563 9 C -0.299 4.299 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.269 1.269 17 C 0.154 3.846 18 H 0.096 0.904 19 C -0.163 4.163 20 N -0.725 5.725 21 C 0.512 3.488 22 O -0.525 6.525 23 C -0.065 4.065 24 C -0.201 4.201 25 C 0.045 3.955 26 N -0.470 5.470 27 C 0.016 3.984 28 S 0.133 5.867 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.353 0.647 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.397 0.603 41 H 0.116 0.884 42 H 0.106 0.894 43 H 0.174 0.826 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.328 1.629 27.418 29.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.033 4.033 3 H 0.101 0.899 4 N -0.291 5.291 5 C -0.081 4.081 6 C 0.225 3.775 7 O -0.467 6.467 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C 0.049 3.951 18 H 0.114 0.886 19 C -0.221 4.221 20 N -0.379 5.379 21 C 0.296 3.704 22 O -0.400 6.400 23 C -0.107 4.107 24 C -0.322 4.322 25 C -0.106 4.106 26 N -0.184 5.184 27 C -0.281 4.281 28 S 0.386 5.614 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.174 0.826 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.233 0.767 41 H 0.134 0.866 42 H 0.125 0.875 43 H 0.191 0.809 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -7.812 -0.021 27.888 28.962 hybrid contribution -0.954 1.379 -1.536 2.274 sum -8.766 1.358 26.352 27.805 Atomic orbital electron populations 1.22619 0.97393 1.02734 1.02040 1.21724 0.92584 0.98194 0.90843 0.89944 1.60022 1.57720 1.09113 1.02267 1.21707 0.99960 0.95677 0.90769 1.19789 0.85249 0.88253 0.84165 1.90530 1.55291 1.16254 1.84591 1.41857 1.57766 1.12432 1.07937 1.19707 1.40020 0.96448 0.86726 0.87898 1.25262 0.97635 0.95772 0.99269 1.69609 1.48714 1.08846 1.27152 0.85853 0.78878 0.78985 0.80557 1.20435 1.20917 1.19387 1.20899 0.99522 0.92437 0.82205 0.88574 1.22172 1.01025 0.95676 1.03230 1.46196 1.25880 1.57361 1.08428 1.20394 0.85177 0.80534 0.84290 1.90767 1.22072 1.41847 1.85288 1.20057 0.98119 1.03650 0.88899 1.25280 1.04566 0.99252 1.03126 1.21700 0.92845 1.02016 0.94038 1.66306 1.28708 1.12745 1.10594 1.28364 0.99274 0.95700 1.04794 1.83978 1.32113 1.24104 1.21216 0.92500 0.91944 0.91618 0.82631 0.93755 0.89558 0.77479 0.91876 0.89980 0.92624 0.92874 0.76722 0.86611 0.87543 0.80894 0.78478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.58 8.68 37.15 0.32 -1.26 16 2 C 0.08 0.84 2.64 -67.72 -0.18 0.66 16 3 H 0.08 0.87 7.80 -51.92 -0.40 0.47 16 4 N -0.66 -9.84 5.23 -107.98 -0.56 -10.41 16 5 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 6 C 0.44 10.18 7.82 -10.99 -0.09 10.09 16 7 O -0.58 -15.60 15.78 5.55 0.09 -15.51 16 8 N -0.56 -14.09 5.29 -10.97 -0.06 -14.15 16 9 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 10 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 12 N -0.90 -24.36 13.05 55.50 0.72 -23.63 16 13 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 C 0.15 1.69 2.63 -67.93 -0.18 1.51 16 18 H 0.10 1.36 7.58 -51.93 -0.39 0.97 16 19 C -0.16 -1.84 8.86 37.16 0.33 -1.51 16 20 N -0.72 -5.89 4.99 -53.81 -0.27 -6.16 16 21 C 0.51 4.95 7.79 -10.98 -0.09 4.86 16 22 O -0.52 -7.60 15.70 5.56 0.09 -7.51 16 23 C -0.06 -0.39 6.24 -29.03 -0.18 -0.57 16 24 C -0.20 -1.70 5.09 -35.92 -0.18 -1.88 16 25 C 0.05 0.44 11.25 -19.18 -0.22 0.22 16 26 N -0.47 -5.00 10.54 -15.75 -0.17 -5.16 16 27 C 0.02 0.13 12.23 51.58 0.63 0.76 16 28 S 0.13 1.02 23.22 -107.50 -2.50 -1.48 16 29 H 0.06 0.33 6.29 -51.93 -0.33 0.00 16 30 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 31 H 0.06 0.56 6.55 -51.93 -0.34 0.22 16 32 H 0.35 5.46 7.39 -39.29 -0.29 5.17 16 33 H 0.04 0.65 7.44 -51.93 -0.39 0.27 16 34 H 0.09 1.35 8.06 -51.93 -0.42 0.93 16 35 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 36 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.08 1.07 7.13 -51.93 -0.37 0.70 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.51 6.57 -51.93 -0.34 0.17 16 40 H 0.40 2.03 6.58 -40.82 -0.27 1.76 16 41 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.20 0.94 8.06 -52.48 -0.42 0.51 16 LS Contribution 381.77 15.07 5.75 5.75 Total: -1.00 -35.24 381.77 -7.89 -43.14 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -5.87 Total: 13.39 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -0.10 Total: 5.76 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.33 Total: -59.51 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.17 Total: -23.03 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.50 Total: -1.48 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.24 -7.89 -43.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570610364.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.628 kcal (2) G-P(sol) polarization free energy of solvation -35.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds