Wall clock time and date at job start Sat Apr 11 2020 05:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35685 * 117.00155 * 2 1 4 4 C 1.39270 * 120.13893 * 179.97438 * 3 2 1 5 5 C 1.38636 * 117.91678 * 179.77386 * 4 3 2 6 6 C 1.38759 * 118.02307 * 0.48281 * 5 4 3 7 7 C 1.50706 * 120.01690 * 179.78495 * 6 5 4 8 8 N 1.46900 * 109.46923 * 94.71977 * 7 6 5 9 9 C 1.46904 * 110.99558 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47005 * 180.02562 * 9 8 7 11 11 H 1.08997 * 109.46736 * 65.00012 * 10 9 8 12 12 C 1.52996 * 109.47047 * 185.00346 * 10 9 8 13 13 N 1.46505 * 109.46912 * 305.00404 * 10 9 8 14 14 C 1.34773 * 119.99716 * 155.00170 * 13 10 9 15 15 O 1.21276 * 120.00090 * 359.97438 * 14 13 10 16 16 C 1.50703 * 119.99800 * 179.97438 * 14 13 10 17 17 S 1.81001 * 109.47109 * 179.97438 * 16 14 13 18 18 C 1.76199 * 99.99949 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99971 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00173 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00295 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99713 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47199 * 89.99726 * 22 20 18 24 24 H 1.48499 * 109.47050 * 209.99731 * 22 20 18 25 25 H 1.48501 * 109.47005 * 329.99638 * 22 20 18 26 26 N 1.31815 * 119.97186 * 359.50733 * 6 5 4 27 27 N 1.28344 * 122.26367 * 0.25732 * 26 6 5 28 28 H 1.08997 * 109.46920 * 299.99630 * 1 2 3 29 29 H 1.08999 * 109.47082 * 60.00174 * 1 2 3 30 30 H 1.09000 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.07999 * 121.04276 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.99192 * 180.24306 * 5 4 3 33 33 H 1.09000 * 109.47292 * 214.72839 * 7 6 5 34 34 H 1.09001 * 109.46828 * 334.72435 * 7 6 5 35 35 H 1.00892 * 111.00116 * 303.95715 * 8 7 6 36 36 H 1.08999 * 109.47318 * 300.00246 * 9 8 7 37 37 H 1.08998 * 109.46993 * 60.00291 * 9 8 7 38 38 H 1.09003 * 109.47075 * 180.02562 * 12 10 9 39 39 H 1.09003 * 109.46859 * 299.99712 * 12 10 9 40 40 H 1.09001 * 109.47534 * 59.99702 * 12 10 9 41 41 H 0.96996 * 119.99960 * 334.99806 * 13 10 9 42 42 H 1.08997 * 109.47395 * 300.00083 * 16 14 13 43 43 H 1.09005 * 109.46701 * 60.00225 * 16 14 13 44 44 H 0.96991 * 120.00089 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4357 1.2852 0.0005 5 6 4.0167 2.5439 -0.0043 6 6 3.1779 3.6492 0.0009 7 6 3.7616 5.0386 0.0008 8 7 3.8406 5.5365 -1.3790 9 6 4.4068 6.8914 -1.4181 10 6 4.4724 7.3751 -2.8682 11 1 3.4618 7.4733 -3.2645 12 6 5.1755 8.7329 -2.9216 13 7 5.2204 6.4058 -3.6728 14 6 5.0028 6.3213 -5.0001 15 8 4.1875 7.0472 -5.5284 16 6 5.7727 5.3247 -5.8279 17 16 5.2589 5.4531 -7.5587 18 6 6.2859 4.2136 -8.2755 19 1 6.9660 3.6500 -7.6539 20 6 6.2200 3.9606 -9.6386 21 7 6.9868 3.0344 -10.1740 22 14 5.0431 4.9349 -10.7135 23 1 5.7288 6.1492 -11.2238 24 1 4.6071 4.0948 -11.8578 25 1 3.8579 5.3350 -9.9133 26 7 1.8702 3.4834 0.0004 27 7 1.3270 2.3206 0.0000 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 4.0424 0.3917 0.0005 32 1 5.0904 2.6607 -0.0081 33 1 3.1260 5.6998 0.5900 34 1 4.7608 5.0129 0.4356 35 1 4.3715 4.9061 -1.9610 36 1 3.7760 7.5657 -0.8388 37 1 5.4105 6.8781 -0.9933 38 1 5.2218 9.0777 -3.9546 39 1 4.6189 9.4540 -2.3229 40 1 6.1861 8.6347 -2.5252 41 1 5.8723 5.8250 -3.2502 42 1 6.8395 5.5335 -5.7488 43 1 5.5716 4.3172 -5.4634 44 1 6.9410 2.8579 -11.1266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732946292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:13 Heat of formation + Delta-G solvation = -13.712862 kcal Electronic energy + Delta-G solvation = -26010.979424 eV Core-core repulsion = 22090.801964 eV Total energy + Delta-G solvation = -3920.177460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.60134 -39.59832 -38.92626 -37.20674 -34.94121 -33.52669 -32.44464 -32.28019 -31.22803 -28.69101 -28.08550 -27.34728 -25.61525 -24.81605 -24.33075 -22.73845 -21.66427 -20.38852 -19.02822 -18.14893 -17.93756 -16.94097 -16.66821 -16.53625 -15.94769 -15.55529 -15.38160 -15.00709 -14.98935 -14.89342 -14.54602 -14.23778 -14.06064 -13.99769 -13.39368 -13.23126 -12.83945 -12.79212 -12.56362 -12.45127 -12.38344 -12.09464 -11.96689 -11.77330 -11.51355 -11.26059 -11.07704 -11.00497 -10.66861 -10.59169 -9.95607 -9.85298 -9.48796 -9.43506 -9.03668 -8.98505 -8.80899 -8.49409 -6.91230 -6.29215 -4.00599 0.38372 0.57856 2.50288 2.76795 2.99667 3.08126 3.30682 3.34397 3.51526 3.59215 3.65708 3.83577 4.00663 4.19831 4.33476 4.41016 4.54231 4.60707 4.74648 4.81748 4.87317 4.92982 4.93652 5.02349 5.10029 5.16154 5.23494 5.26920 5.30840 5.34785 5.37322 5.52903 5.59074 5.68161 5.75793 5.99014 6.00441 6.09603 6.51070 6.58960 6.60995 6.92402 7.59570 7.93876 8.33742 8.40786 8.51791 9.17227 10.80063 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009106 B = 0.002565 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.026092 B =10914.873646 C =13152.146883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.301 6.301 3 C 0.261 3.739 4 C -0.133 4.133 5 C -0.079 4.079 6 C 0.038 3.962 7 C 0.119 3.881 8 N -0.680 5.680 9 C 0.055 3.945 10 C 0.145 3.855 11 H 0.097 0.903 12 C -0.163 4.163 13 N -0.733 5.733 14 C 0.534 3.466 15 O -0.515 6.515 16 C -0.124 4.124 17 S -0.140 6.140 18 C -0.521 4.521 19 H 0.087 0.913 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 N -0.181 5.181 27 N -0.299 5.299 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.344 0.656 36 H 0.090 0.910 37 H 0.038 0.962 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.393 0.607 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.782 -0.071 27.590 28.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.205 6.205 3 C 0.076 3.924 4 C -0.162 4.162 5 C -0.108 4.108 6 C -0.110 4.110 7 C -0.011 4.011 8 N -0.313 5.313 9 C -0.074 4.074 10 C 0.039 3.961 11 H 0.116 0.884 12 C -0.222 4.222 13 N -0.388 5.388 14 C 0.319 3.681 15 O -0.389 6.389 16 C -0.275 4.275 17 S 0.086 5.914 18 C -0.669 4.669 19 H 0.105 0.895 20 C -0.113 4.113 21 N -0.518 5.518 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 N -0.024 5.024 27 N -0.155 5.155 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.176 0.824 32 H 0.174 0.826 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.164 0.836 36 H 0.109 0.891 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.227 0.773 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.195 1.603 26.537 27.819 hybrid contribution 3.115 -1.833 0.287 3.626 sum -5.079 -0.230 26.823 27.301 Atomic orbital electron populations 1.23033 0.76327 1.03671 1.03051 1.86239 1.23599 1.23338 1.87348 1.21556 0.91025 0.87306 0.92488 1.21559 0.92453 0.99986 1.02236 1.22219 1.02222 0.91358 0.94997 1.22568 0.91656 0.96899 0.99831 1.20642 0.98985 0.90143 0.91338 1.60305 1.58435 1.03742 1.08805 1.22304 0.98129 0.90502 0.96498 1.20955 0.97550 0.88194 0.89365 0.88449 1.22161 1.00361 0.96366 1.03292 1.46010 1.43973 1.40722 1.08056 1.20220 0.82512 0.83642 0.81678 1.90701 1.34040 1.43093 1.71095 1.23283 1.02849 1.00773 1.00615 1.84817 1.56134 1.52299 0.98172 1.22318 1.25818 1.22009 0.96731 0.89455 1.24713 0.95143 0.94420 0.97043 1.69933 1.38045 1.30955 1.12847 0.86737 0.83228 0.80541 0.81378 1.19206 1.19944 1.15868 1.72734 1.10842 1.13227 1.05644 1.73126 1.31792 0.94219 1.16327 0.91877 0.91636 0.88003 0.82449 0.82635 0.88548 0.92981 0.83640 0.89150 0.94408 0.91398 0.91676 0.92614 0.77348 0.88644 0.88639 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.40 101.05 1.05 1.30 16 2 O -0.30 -2.94 10.49 -18.76 -0.20 -3.13 16 3 C 0.26 2.76 7.57 -16.95 -0.13 2.63 16 4 C -0.13 -1.06 10.16 -39.05 -0.40 -1.46 16 5 C -0.08 -0.55 9.85 -39.24 -0.39 -0.94 16 6 C 0.04 0.35 6.38 -82.40 -0.53 -0.18 16 7 C 0.12 0.83 6.02 -4.97 -0.03 0.80 16 8 N -0.68 -5.83 6.48 -115.05 -0.75 -6.57 16 9 C 0.06 0.40 5.30 -3.82 -0.02 0.38 16 10 C 0.14 1.51 2.88 -67.93 -0.20 1.31 16 11 H 0.10 1.31 7.58 -51.93 -0.39 0.92 16 12 C -0.16 -1.56 9.48 37.16 0.35 -1.21 16 13 N -0.73 -8.61 4.36 -53.80 -0.23 -8.84 16 14 C 0.53 9.20 7.81 -10.99 -0.09 9.11 16 15 O -0.52 -11.00 15.52 5.56 0.09 -10.91 16 16 C -0.12 -2.36 6.16 36.01 0.22 -2.14 16 17 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 18 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 19 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.62 13.97 55.49 0.78 -25.85 16 22 Si 0.86 21.90 27.74 -169.99 -4.72 17.19 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.23 -6.01 6.74 56.52 0.38 -5.63 16 26 N -0.18 -2.21 11.42 33.61 0.38 -1.83 16 27 N -0.30 -3.69 10.41 30.50 0.32 -3.37 16 28 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 29 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.23 8.06 -51.93 -0.42 -0.19 16 35 H 0.34 2.96 7.57 -39.30 -0.30 2.66 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.39 3.42 8.15 -40.82 -0.33 3.08 16 42 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.10 1.69 8.14 -51.91 -0.42 1.26 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 390.74 15.07 5.89 5.89 Total: -1.00 -36.91 390.74 -6.88 -43.78 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.51 Total: 1.58 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 0.07 Total: -2.37 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.50 Total: -46.47 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.11 Total: -14.05 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.72 Total: 17.19 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.91 -6.88 -43.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732946292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.071 kcal (2) G-P(sol) polarization free energy of solvation -36.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds