Wall clock time and date at job start Sat Apr 11 2020 05:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.46906 * 2 1 4 4 C 1.53001 * 109.47067 * 119.99471 * 2 1 3 5 5 N 1.46905 * 109.46928 * 294.99893 * 4 2 1 6 6 C 1.46902 * 110.99562 * 179.97438 * 5 4 2 7 7 C 1.50704 * 109.46995 * 180.02562 * 6 5 4 8 8 O 1.21296 * 119.99954 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00354 * 180.02562 * 7 6 5 10 10 C 1.37100 * 120.00333 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00106 * 359.97438 * 10 9 7 12 12 C 1.38950 * 119.99949 * 180.02562 * 10 9 7 13 13 N 1.31412 * 119.99741 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00088 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47100 * 90.00268 * 14 12 10 16 16 H 1.48505 * 109.46716 * 209.99924 * 14 12 10 17 17 H 1.48495 * 109.47287 * 329.99837 * 14 12 10 18 18 C 1.52999 * 109.47225 * 239.99595 * 2 1 3 19 19 N 1.46497 * 109.46992 * 64.99918 * 18 2 1 20 20 C 1.34777 * 119.99525 * 179.97438 * 19 18 2 21 21 O 1.21283 * 120.00463 * 0.02562 * 20 19 18 22 22 C 1.50700 * 119.99675 * 179.72583 * 20 19 18 23 23 C 1.50703 * 109.47148 * 180.28037 * 22 20 19 24 24 C 1.33633 * 126.04043 * 89.99780 * 23 22 20 25 25 N 1.31782 * 114.50271 * 179.97438 * 24 23 22 26 26 C 1.29027 * 117.12355 * 0.02562 * 25 24 23 27 27 S 1.70978 * 110.16563 * 359.72471 * 26 25 24 28 28 H 1.08998 * 109.47345 * 60.00294 * 1 2 3 29 29 H 1.09002 * 109.47301 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47633 * 300.00467 * 1 2 3 31 31 H 1.08996 * 109.47431 * 54.99985 * 4 2 1 32 32 H 1.09001 * 109.47356 * 175.00798 * 4 2 1 33 33 H 1.00894 * 111.00528 * 303.95682 * 5 4 2 34 34 H 1.09001 * 109.47305 * 299.99832 * 6 5 4 35 35 H 1.08994 * 109.47400 * 60.00801 * 6 5 4 36 36 H 0.97002 * 119.99670 * 359.97438 * 9 7 6 37 37 H 0.97005 * 119.99878 * 180.02562 * 13 12 10 38 38 H 1.08995 * 109.46838 * 304.99806 * 18 2 1 39 39 H 1.09001 * 109.46617 * 185.00141 * 18 2 1 40 40 H 0.97000 * 120.00580 * 0.02562 * 19 18 2 41 41 H 1.09009 * 109.47352 * 300.27556 * 22 20 19 42 42 H 1.08998 * 109.47585 * 60.27844 * 22 20 19 43 43 H 1.08004 * 122.75084 * 0.02562 * 24 23 22 44 44 H 1.08003 * 124.91835 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 1.6513 0.0377 2.4456 6 6 2.1246 -0.6268 3.6673 7 6 1.7076 0.1785 4.8709 8 8 1.0776 1.2047 4.7254 9 7 2.0346 -0.2416 6.1090 10 6 1.6548 0.4907 7.2041 11 1 1.0939 1.4045 7.0745 12 6 1.9925 0.0579 8.4805 13 7 1.6288 0.7601 9.5301 14 14 2.9633 -1.5222 8.7046 15 1 4.4164 -1.2162 8.6935 16 1 2.5990 -2.1472 10.0015 17 1 2.6463 -2.4593 7.5971 18 6 2.0399 -0.7213 -1.2492 19 7 1.6524 0.0352 -2.4423 20 6 1.9964 -0.4134 -3.6658 21 8 2.6265 -1.4435 -3.7790 22 6 1.5924 0.3616 -4.8935 23 6 2.0905 -0.3515 -6.1242 24 6 1.4273 -1.2831 -6.8156 25 7 2.0790 -1.7572 -7.8583 26 6 3.2553 -1.2777 -8.0845 27 16 3.6473 -0.0989 -6.9097 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6053 -1.7197 1.2954 32 1 3.1262 -0.7993 1.2058 33 1 1.9880 0.9876 2.3966 34 1 1.6902 -1.6245 3.7299 35 1 3.2115 -0.7047 3.6407 36 1 2.5382 -1.0625 6.2254 37 1 1.8649 0.4581 10.4212 38 1 1.6054 -1.7198 -1.2950 39 1 3.1263 -0.7995 -1.2054 40 1 1.1488 0.8593 -2.3518 41 1 0.5058 0.4388 -4.9332 42 1 2.0264 1.3606 -4.8518 43 1 0.4379 -1.6193 -6.5428 44 1 3.8976 -1.5748 -8.9004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753619940.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:31 Heat of formation + Delta-G solvation = -27.862649 kcal Electronic energy + Delta-G solvation = -25313.668864 eV Core-core repulsion = 21392.877823 eV Total energy + Delta-G solvation = -3920.791041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.45373 -39.65628 -38.57810 -37.35342 -35.03396 -33.94562 -33.38331 -32.32978 -31.65374 -28.57376 -27.59036 -26.69793 -25.18639 -24.46329 -23.00025 -21.16488 -20.77139 -20.32286 -19.37592 -18.55616 -18.32574 -17.50544 -16.72057 -16.19093 -15.93701 -15.79646 -15.48272 -15.03316 -14.86574 -14.59555 -14.40704 -14.32002 -14.00649 -13.70714 -13.57875 -13.28571 -13.20240 -12.93871 -12.66781 -12.58136 -12.11040 -12.06682 -11.81157 -11.66713 -11.28387 -11.17035 -11.11605 -10.97972 -10.61096 -10.39118 -10.07228 -9.99439 -9.66680 -9.59205 -9.44686 -9.33667 -8.62081 -8.22241 -8.16530 -6.33038 -3.84584 0.26233 0.93214 1.31923 2.22086 2.39322 2.83320 3.01484 3.05319 3.13903 3.71952 3.89033 4.03022 4.09039 4.15688 4.41926 4.48941 4.61010 4.68492 4.77854 4.81789 4.88022 4.96622 5.19768 5.22482 5.24018 5.35411 5.48872 5.57288 5.58627 5.71142 5.73787 5.78553 5.79985 5.91016 5.96376 6.11551 6.31529 7.03332 7.06469 7.28238 7.52118 7.56365 7.80543 8.12423 8.57690 8.92921 9.40479 9.80470 10.80034 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.037049 B = 0.001400 C = 0.001379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.568061 B =19998.994042 C =20299.047163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.077 0.923 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.048 3.952 7 C 0.450 3.550 8 O -0.565 6.565 9 N -0.590 5.590 10 C -0.306 4.306 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.269 1.269 18 C 0.124 3.876 19 N -0.726 5.726 20 C 0.511 3.489 21 O -0.530 6.530 22 C -0.064 4.064 23 C -0.202 4.202 24 C 0.045 3.955 25 N -0.471 5.471 26 C 0.017 3.983 27 S 0.134 5.866 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.350 0.650 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.371 0.629 37 H 0.273 0.727 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.403 0.597 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.174 0.826 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.415 -2.436 -33.086 33.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.096 0.904 4 C -0.064 4.064 5 N -0.298 5.298 6 C -0.085 4.085 7 C 0.235 3.765 8 O -0.447 6.447 9 N -0.230 5.230 10 C -0.435 4.435 11 H 0.137 0.863 12 C -0.161 4.161 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.195 1.195 18 C 0.001 3.999 19 N -0.378 5.378 20 C 0.296 3.704 21 O -0.405 6.405 22 C -0.107 4.107 23 C -0.323 4.323 24 C -0.106 4.106 25 N -0.184 5.184 26 C -0.281 4.281 27 S 0.387 5.613 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.169 0.831 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.237 0.763 41 H 0.135 0.865 42 H 0.126 0.874 43 H 0.191 0.809 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 3.494 -2.540 -33.210 33.489 hybrid contribution 0.719 -1.091 0.684 1.475 sum 4.213 -3.631 -32.525 32.997 Atomic orbital electron populations 1.21763 0.93618 1.02217 1.02191 1.21343 0.97703 0.99977 0.92873 0.90419 1.21900 0.97362 0.97983 0.89199 1.60019 1.64188 1.05915 0.99698 1.21701 0.97835 0.98711 0.90217 1.19704 0.85226 0.87895 0.83637 1.90561 1.42820 1.25920 1.85438 1.42210 1.51052 1.23704 1.06008 1.19434 1.33724 1.07618 0.82691 0.86281 1.25037 0.97839 0.98073 0.95154 1.69623 1.45541 1.38540 0.98386 0.86671 0.80790 0.83276 0.78654 1.19667 1.20145 1.19467 1.21408 1.00046 0.95470 0.83025 1.45975 1.58072 1.28070 1.05702 1.20431 0.79770 0.85863 0.84342 1.90756 1.39197 1.24035 1.86544 1.20045 1.03584 0.99034 0.88029 1.25277 0.98108 1.05748 1.03212 1.21699 1.01902 0.95278 0.91731 1.66311 1.06831 1.26616 1.18649 1.28376 0.96711 0.99174 1.03801 1.84010 1.16870 1.38731 1.21681 0.93637 0.92776 0.90346 0.90700 0.95237 0.83053 0.89459 0.93747 0.79679 0.91601 0.91135 0.91459 0.76265 0.86466 0.87375 0.80900 0.78433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.95 37.15 0.33 -0.90 16 2 C -0.10 -0.82 2.57 -90.62 -0.23 -1.06 16 3 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 4 C 0.07 0.68 5.07 -3.82 -0.02 0.66 16 5 N -0.67 -9.41 5.58 -115.05 -0.64 -10.05 16 6 C 0.05 0.76 6.17 -4.97 -0.03 0.73 16 7 C 0.45 9.97 7.82 -10.99 -0.09 9.89 16 8 O -0.57 -14.84 15.78 5.54 0.09 -14.76 16 9 N -0.59 -13.88 5.09 -10.96 -0.06 -13.94 16 10 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 11 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 13 N -0.88 -25.57 13.96 55.50 0.77 -24.80 16 14 Si 0.88 19.22 27.74 -169.99 -4.71 14.50 16 15 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 18 C 0.12 1.00 5.06 -4.04 -0.02 0.98 16 19 N -0.73 -4.76 5.28 -60.30 -0.32 -5.08 16 20 C 0.51 4.22 7.82 -10.98 -0.09 4.13 16 21 O -0.53 -6.79 16.03 5.55 0.09 -6.70 16 22 C -0.06 -0.32 6.24 -29.03 -0.18 -0.51 16 23 C -0.20 -1.51 5.09 -35.92 -0.18 -1.69 16 24 C 0.05 0.39 11.25 -19.19 -0.22 0.17 16 25 N -0.47 -4.55 10.54 -15.75 -0.17 -4.71 16 26 C 0.02 0.12 12.23 51.58 0.63 0.75 16 27 S 0.13 0.90 23.22 -107.50 -2.50 -1.59 16 28 H 0.04 0.31 7.18 -51.93 -0.37 -0.07 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.88 7.75 -51.93 -0.40 0.48 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.35 5.12 8.43 -39.30 -0.33 4.78 16 34 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.40 1.62 7.66 -40.82 -0.31 1.31 16 41 H 0.12 0.29 8.14 -51.92 -0.42 -0.13 16 42 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 44 H 0.20 0.76 8.06 -52.48 -0.42 0.34 16 LS Contribution 387.91 15.07 5.85 5.85 Total: -1.00 -36.56 387.91 -8.22 -44.78 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.28 Total: 11.03 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -0.34 Total: 5.47 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.41 Total: -58.58 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: 0.18 Total: -21.45 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.71 Total: 14.50 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.50 Total: -1.59 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.56 -8.22 -44.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753619940.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.915 kcal (2) G-P(sol) polarization free energy of solvation -36.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds