Wall clock time and date at job start Sat Apr 11 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46930 * 2 1 4 4 C 1.52993 * 109.47660 * 239.99619 * 2 1 3 5 5 N 1.46905 * 109.47039 * 65.00109 * 4 2 1 6 6 C 1.46901 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.46943 * 180.02562 * 6 5 4 8 8 O 1.21292 * 120.00024 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99767 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99759 * 179.97438 * 9 7 6 11 11 H 1.08000 * 120.00171 * 359.97438 * 10 9 7 12 12 C 1.38951 * 120.00074 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99768 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00310 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47191 * 60.00175 * 14 12 10 16 16 H 1.48495 * 109.47229 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47299 * 300.00478 * 14 12 10 18 18 C 1.53002 * 109.47018 * 119.99296 * 2 1 3 19 19 N 1.46497 * 109.47145 * 295.00697 * 18 2 1 20 20 C 1.34779 * 119.99900 * 179.97438 * 19 18 2 21 21 O 1.21279 * 120.00214 * 359.97438 * 20 19 18 22 22 C 1.50706 * 120.00162 * 179.97438 * 20 19 18 23 23 C 1.50700 * 109.47226 * 179.97438 * 22 20 19 24 24 C 1.33638 * 126.03579 * 89.71875 * 23 22 20 25 25 N 1.31785 * 114.49818 * 179.78990 * 24 23 22 26 26 C 1.29027 * 117.12231 * 0.51789 * 25 24 23 27 27 S 1.70980 * 110.16855 * 359.71525 * 26 25 24 28 28 H 1.08996 * 109.47633 * 300.00550 * 1 2 3 29 29 H 1.09008 * 109.46827 * 60.00928 * 1 2 3 30 30 H 1.08998 * 109.46936 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47393 * 305.00390 * 4 2 1 32 32 H 1.08998 * 109.47408 * 185.00036 * 4 2 1 33 33 H 1.00901 * 110.99869 * 56.04956 * 5 4 2 34 34 H 1.09004 * 109.47031 * 299.99620 * 6 5 4 35 35 H 1.08995 * 109.47111 * 59.99900 * 6 5 4 36 36 H 0.96997 * 120.00713 * 359.97438 * 9 7 6 37 37 H 0.96999 * 119.99907 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.46730 * 55.00366 * 18 2 1 39 39 H 1.08994 * 109.47589 * 175.00151 * 18 2 1 40 40 H 0.97000 * 120.00674 * 359.97438 * 19 18 2 41 41 H 1.09002 * 109.46964 * 300.00250 * 22 20 19 42 42 H 1.08996 * 109.46834 * 59.99779 * 22 20 19 43 43 H 1.07997 * 122.75338 * 359.96967 * 24 23 22 44 44 H 1.07997 * 124.91344 * 179.68537 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6515 0.0374 -2.4456 6 6 2.1250 -0.6273 -3.6671 7 6 1.7091 0.1784 -4.8708 8 8 1.0798 1.2051 -4.7254 9 7 2.0356 -0.2423 -6.1088 10 6 1.6568 0.4904 -7.2039 11 1 1.0965 1.4046 -7.0745 12 6 1.9939 0.0570 -8.4803 13 7 2.6753 -1.0556 -8.6378 14 14 1.4772 1.0550 -9.9725 15 1 2.0684 2.4146 -9.8876 16 1 1.9555 0.3829 -11.2073 17 1 -0.0036 1.1606 -10.0088 18 6 2.0399 -0.7211 1.2494 19 7 1.6522 0.0355 2.4424 20 6 1.9953 -0.4133 3.6660 21 8 2.6246 -1.4438 3.7795 22 6 1.5970 0.3653 4.8933 23 6 2.0981 -0.3457 6.1239 24 6 3.2857 -0.1626 6.7089 25 7 3.4874 -0.9038 7.7797 26 6 2.5403 -1.7093 8.1246 27 16 1.2248 -1.5706 7.0412 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.6055 -1.7198 -1.2951 32 1 3.1264 -0.7995 -1.2054 33 1 1.9883 0.9872 -2.3967 34 1 3.2119 -0.7051 -3.6404 35 1 1.6907 -1.6250 -3.7295 36 1 2.5386 -1.0635 -6.2252 37 1 2.9103 -1.3584 -9.5289 38 1 1.6053 -1.7197 1.2953 39 1 3.1262 -0.7994 1.2058 40 1 1.1486 0.8596 2.3517 41 1 2.0323 1.3636 4.8474 42 1 0.5108 0.4443 4.9368 43 1 4.0187 0.5375 6.3364 44 1 2.5738 -2.3750 8.9743 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753619941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:34 Heat of formation + Delta-G solvation = -34.997487 kcal Electronic energy + Delta-G solvation = -25258.760708 eV Core-core repulsion = 21337.660277 eV Total energy + Delta-G solvation = -3921.100431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.42810 -39.62976 -38.39543 -37.26672 -34.95869 -33.88689 -33.35283 -32.25686 -31.20478 -28.53900 -27.42880 -26.64390 -25.15396 -24.50264 -23.06048 -21.13235 -20.73885 -20.28115 -19.21586 -18.51263 -17.90616 -17.47189 -16.62976 -16.25238 -16.00313 -15.62216 -15.33249 -14.89028 -14.82080 -14.50629 -14.38802 -14.29889 -13.89941 -13.69031 -13.52936 -13.43052 -13.32004 -12.82308 -12.58605 -12.40117 -11.95997 -11.70504 -11.64452 -11.53130 -11.17736 -11.11443 -10.99691 -10.92572 -10.45361 -10.36162 -10.22434 -10.05327 -9.64622 -9.51229 -9.41183 -9.31572 -8.48322 -8.08108 -7.97204 -6.42747 -3.83794 0.28117 0.95209 1.33904 2.25008 2.41444 2.86503 3.19136 3.25067 3.29273 3.89518 3.91043 4.06704 4.17916 4.27823 4.45122 4.51527 4.66144 4.77683 4.83518 4.89358 4.91850 5.14830 5.24475 5.25101 5.29100 5.42562 5.54034 5.63701 5.72043 5.73353 5.83292 5.84728 5.96672 5.99834 6.15883 6.25202 6.35136 7.09603 7.16864 7.30111 7.53782 7.62086 7.83616 8.04795 8.59939 9.16486 9.53056 10.04357 10.74856 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.047990 B = 0.001334 C = 0.001324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.313654 B =20976.917926 C =21142.940010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.077 0.923 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.440 3.560 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.301 4.301 11 H 0.102 0.898 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.124 3.876 19 N -0.725 5.725 20 C 0.511 3.489 21 O -0.529 6.529 22 C -0.064 4.064 23 C -0.202 4.202 24 C 0.045 3.955 25 N -0.471 5.471 26 C 0.016 3.984 27 S 0.135 5.865 28 H 0.044 0.956 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.029 0.971 33 H 0.348 0.652 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.402 0.598 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.174 0.826 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.165 -0.269 30.792 30.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.095 0.905 4 C -0.065 4.065 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.469 6.469 9 N -0.200 5.200 10 C -0.431 4.431 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.000 4.000 19 N -0.378 5.378 20 C 0.296 3.704 21 O -0.405 6.405 22 C -0.107 4.107 23 C -0.324 4.324 24 C -0.106 4.106 25 N -0.184 5.184 26 C -0.281 4.281 27 S 0.388 5.612 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.168 0.832 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.226 0.774 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.237 0.763 41 H 0.135 0.865 42 H 0.126 0.874 43 H 0.191 0.809 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -3.154 -1.212 31.031 31.214 hybrid contribution 1.522 0.951 -1.224 2.172 sum -1.632 -0.260 29.807 29.852 Atomic orbital electron populations 1.21761 0.93693 1.02192 1.02105 1.21342 0.97636 0.99960 0.92930 0.90474 1.21896 0.97356 0.97985 0.89230 1.60037 1.64160 1.05825 0.99780 1.21665 0.97762 0.98655 0.90105 1.19802 0.85587 0.87940 0.84085 1.90516 1.44164 1.26444 1.85747 1.41859 1.49470 1.24200 1.04439 1.19657 1.33013 1.06756 0.83640 0.87972 1.25263 0.96871 0.96634 0.99108 1.69606 1.38809 1.21676 1.24185 0.85914 0.79064 0.79374 0.79839 1.19923 1.20969 1.19880 1.21416 1.00089 0.95451 0.83005 1.45979 1.58068 1.28045 1.05710 1.20431 0.79763 0.85902 0.84348 1.90756 1.39124 1.24103 1.86534 1.20044 1.03330 0.99307 0.88009 1.25282 0.99452 1.04403 1.03220 1.21697 0.95796 1.00705 0.92410 1.66312 1.29915 1.06839 1.15366 1.28375 0.92962 1.02398 1.04357 1.84006 1.21268 1.35020 1.20917 0.93718 0.90367 0.92785 0.90733 0.95275 0.83244 0.93881 0.89586 0.77446 0.91807 0.91147 0.91416 0.76296 0.86503 0.87367 0.80916 0.78440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.95 37.16 0.33 -0.95 16 2 C -0.10 -0.88 2.57 -90.62 -0.23 -1.11 16 3 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 4 C 0.07 0.73 5.07 -3.82 -0.02 0.71 16 5 N -0.67 -9.99 5.58 -115.06 -0.64 -10.63 16 6 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 7 C 0.44 10.24 7.82 -10.99 -0.09 10.15 16 8 O -0.58 -15.58 15.78 5.55 0.09 -15.50 16 9 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 10 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 11 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 13 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 14 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 C 0.12 1.06 5.06 -4.04 -0.02 1.04 16 19 N -0.73 -5.02 5.28 -60.29 -0.32 -5.33 16 20 C 0.51 4.37 7.82 -10.98 -0.09 4.28 16 21 O -0.53 -6.95 16.03 5.56 0.09 -6.86 16 22 C -0.06 -0.34 6.24 -29.03 -0.18 -0.52 16 23 C -0.20 -1.55 5.09 -35.92 -0.18 -1.74 16 24 C 0.05 0.40 11.25 -19.18 -0.22 0.18 16 25 N -0.47 -4.64 10.54 -15.75 -0.17 -4.81 16 26 C 0.02 0.12 12.23 51.58 0.63 0.75 16 27 S 0.14 0.93 23.22 -107.50 -2.50 -1.56 16 28 H 0.04 0.32 7.18 -51.93 -0.37 -0.06 16 29 H 0.08 0.91 7.75 -51.92 -0.40 0.51 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.35 5.38 8.43 -39.29 -0.33 5.05 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.40 1.75 7.66 -40.82 -0.31 1.44 16 41 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.20 0.80 8.06 -52.49 -0.42 0.37 16 LS Contribution 391.02 15.07 5.89 5.89 Total: -1.00 -35.28 391.02 -8.57 -43.85 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -6.33 Total: 11.32 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -0.33 Total: 5.65 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.46 Total: -58.69 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.18 Total: -22.36 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.50 Total: -1.56 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.28 -8.57 -43.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753619941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.853 kcal (2) G-P(sol) polarization free energy of solvation -35.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds