Wall clock time and date at job start Sat Apr 11 2020 05:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46930 * 2 1 4 4 C 1.52993 * 109.47660 * 239.99619 * 2 1 3 5 5 N 1.46905 * 109.47039 * 65.00109 * 4 2 1 6 6 C 1.46901 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.46943 * 180.02562 * 6 5 4 8 8 O 1.21292 * 120.00024 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99767 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99759 * 179.97438 * 9 7 6 11 11 H 1.08000 * 120.00171 * 359.97438 * 10 9 7 12 12 C 1.38951 * 120.00074 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99768 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00310 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47191 * 60.00175 * 14 12 10 16 16 H 1.48495 * 109.47229 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47299 * 300.00478 * 14 12 10 18 18 C 1.53002 * 109.47018 * 119.99296 * 2 1 3 19 19 N 1.46497 * 109.47145 * 295.00697 * 18 2 1 20 20 C 1.34779 * 119.99900 * 179.97438 * 19 18 2 21 21 O 1.21279 * 120.00214 * 359.97438 * 20 19 18 22 22 C 1.50706 * 120.00162 * 179.97438 * 20 19 18 23 23 C 1.50700 * 109.47226 * 179.97438 * 22 20 19 24 24 C 1.33638 * 126.03579 * 89.71875 * 23 22 20 25 25 N 1.31785 * 114.49818 * 179.78990 * 24 23 22 26 26 C 1.29027 * 117.12231 * 0.51789 * 25 24 23 27 27 S 1.70980 * 110.16855 * 359.71525 * 26 25 24 28 28 H 1.08996 * 109.47633 * 300.00550 * 1 2 3 29 29 H 1.09008 * 109.46827 * 60.00928 * 1 2 3 30 30 H 1.08998 * 109.46936 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47393 * 305.00390 * 4 2 1 32 32 H 1.08998 * 109.47408 * 185.00036 * 4 2 1 33 33 H 1.00901 * 110.99869 * 56.04956 * 5 4 2 34 34 H 1.09004 * 109.47031 * 299.99620 * 6 5 4 35 35 H 1.08995 * 109.47111 * 59.99900 * 6 5 4 36 36 H 0.96997 * 120.00713 * 359.97438 * 9 7 6 37 37 H 0.96999 * 119.99907 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.46730 * 55.00366 * 18 2 1 39 39 H 1.08994 * 109.47589 * 175.00151 * 18 2 1 40 40 H 0.97000 * 120.00674 * 359.97438 * 19 18 2 41 41 H 1.09002 * 109.46964 * 300.00250 * 22 20 19 42 42 H 1.08996 * 109.46834 * 59.99779 * 22 20 19 43 43 H 1.07997 * 122.75338 * 359.96967 * 24 23 22 44 44 H 1.07997 * 124.91344 * 179.68537 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6515 0.0374 -2.4456 6 6 2.1250 -0.6273 -3.6671 7 6 1.7091 0.1784 -4.8708 8 8 1.0798 1.2051 -4.7254 9 7 2.0356 -0.2423 -6.1088 10 6 1.6568 0.4904 -7.2039 11 1 1.0965 1.4046 -7.0745 12 6 1.9939 0.0570 -8.4803 13 7 2.6753 -1.0556 -8.6378 14 14 1.4772 1.0550 -9.9725 15 1 2.0684 2.4146 -9.8876 16 1 1.9555 0.3829 -11.2073 17 1 -0.0036 1.1606 -10.0088 18 6 2.0399 -0.7211 1.2494 19 7 1.6522 0.0355 2.4424 20 6 1.9953 -0.4133 3.6660 21 8 2.6246 -1.4438 3.7795 22 6 1.5970 0.3653 4.8933 23 6 2.0981 -0.3457 6.1239 24 6 3.2857 -0.1626 6.7089 25 7 3.4874 -0.9038 7.7797 26 6 2.5403 -1.7093 8.1246 27 16 1.2248 -1.5706 7.0412 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.6055 -1.7198 -1.2951 32 1 3.1264 -0.7995 -1.2054 33 1 1.9883 0.9872 -2.3967 34 1 3.2119 -0.7051 -3.6404 35 1 1.6907 -1.6250 -3.7295 36 1 2.5386 -1.0635 -6.2252 37 1 2.9103 -1.3584 -9.5289 38 1 1.6053 -1.7197 1.2953 39 1 3.1262 -0.7994 1.2058 40 1 1.1486 0.8596 2.3517 41 1 2.0323 1.3636 4.8474 42 1 0.5108 0.4443 4.9368 43 1 4.0187 0.5375 6.3364 44 1 2.5738 -2.3750 8.9743 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753619941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:33 Heat of formation + Delta-G solvation = -62.920648 kcal Electronic energy + Delta-G solvation = -25259.971547 eV Core-core repulsion = 21337.660277 eV Total energy + Delta-G solvation = -3922.311270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.05992 -40.28701 -40.11981 -38.26460 -36.18202 -35.63427 -33.97677 -33.32781 -33.00928 -29.20600 -28.70082 -27.41452 -26.51968 -25.43675 -24.21779 -21.79378 -21.55390 -21.05228 -20.77882 -19.88833 -19.07211 -18.14870 -17.77370 -17.16495 -16.99058 -16.77791 -16.46493 -16.07692 -15.95966 -15.60348 -15.44568 -15.18036 -15.01668 -14.85786 -14.45645 -14.37258 -13.98771 -13.91867 -13.56509 -13.39692 -13.28504 -13.12822 -12.98418 -12.82489 -12.42781 -12.14465 -12.12539 -11.99335 -11.93452 -11.69841 -11.49212 -11.09133 -10.63375 -10.33861 -10.20602 -10.08589 -10.01158 -9.86215 -9.29411 -8.46035 -5.95027 -0.26054 0.44855 0.79769 1.40493 1.42474 1.53385 1.62528 1.82264 2.06088 2.24354 2.31515 2.96703 3.21388 3.43581 3.54030 3.69315 3.88219 3.90258 4.07208 4.10414 4.15767 4.33406 4.38399 4.48612 4.51508 4.57817 4.58846 4.64629 4.76534 4.78989 4.85790 4.98718 5.10921 5.18522 5.29163 5.41128 5.45712 5.56628 5.88981 6.10362 6.42968 6.55410 6.60490 6.74570 7.12884 7.25155 7.56899 8.11837 8.71062 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.047990 B = 0.001334 C = 0.001324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.313654 B =20976.917926 C =21142.940010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.086 0.914 4 C 0.065 3.935 5 N -0.676 5.676 6 C 0.065 3.935 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.336 4.336 11 H 0.080 0.920 12 C -0.012 4.012 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.271 1.271 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.132 3.868 19 N -0.713 5.713 20 C 0.510 3.490 21 O -0.581 6.581 22 C -0.059 4.059 23 C -0.210 4.210 24 C 0.024 3.976 25 N -0.507 5.507 26 C 0.011 3.989 27 S 0.149 5.851 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.345 0.655 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.396 0.604 37 H 0.277 0.723 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.418 0.582 41 H 0.147 0.853 42 H 0.136 0.864 43 H 0.181 0.819 44 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 0.083 31.522 31.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 H 0.104 0.896 4 C -0.064 4.064 5 N -0.308 5.308 6 C -0.068 4.068 7 C 0.225 3.775 8 O -0.508 6.508 9 N -0.211 5.211 10 C -0.465 4.465 11 H 0.098 0.902 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.817 3.183 15 H -0.196 1.196 16 H -0.196 1.196 17 H -0.197 1.197 18 C 0.008 3.992 19 N -0.366 5.366 20 C 0.297 3.703 21 O -0.460 6.460 22 C -0.101 4.101 23 C -0.332 4.332 24 C -0.126 4.126 25 N -0.221 5.221 26 C -0.286 4.286 27 S 0.402 5.598 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.164 0.836 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.255 0.745 41 H 0.165 0.835 42 H 0.154 0.846 43 H 0.198 0.802 44 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.647 -0.852 31.773 31.993 hybrid contribution 1.648 0.817 -1.387 2.303 sum -2.000 -0.035 30.386 30.452 Atomic orbital electron populations 1.21709 0.93773 1.01857 1.02029 1.21199 0.97330 1.00106 0.91917 0.89599 1.21981 0.98104 0.97837 0.88493 1.60034 1.64635 1.05940 1.00215 1.21521 0.99035 0.98033 0.88198 1.20876 0.83889 0.87637 0.85059 1.90483 1.45537 1.28319 1.86502 1.41940 1.50056 1.24322 1.04786 1.19652 1.34524 1.07045 0.85325 0.90213 1.26041 0.96402 0.97553 1.01218 1.69671 1.38938 1.22447 1.25093 0.84987 0.78630 0.78042 0.76675 1.19622 1.19571 1.19715 1.21205 0.99464 0.95167 0.83390 1.45859 1.57583 1.28279 1.04898 1.20974 0.78697 0.85327 0.85341 1.90740 1.41553 1.26474 1.87249 1.20172 1.05101 0.99665 0.85147 1.25601 0.99274 1.04426 1.03856 1.21940 0.96642 1.01329 0.92738 1.66325 1.31266 1.08083 1.16440 1.28862 0.92661 1.02056 1.04993 1.83905 1.20791 1.34629 1.20459 0.91268 0.92938 0.93256 0.90537 0.94276 0.83643 0.91743 0.88018 0.77021 0.91322 0.92119 0.92245 0.74481 0.83502 0.84649 0.80177 0.75930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.95 71.98 0.64 -1.62 16 2 C -0.09 -1.36 2.57 -10.80 -0.03 -1.39 16 3 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 4 C 0.07 1.34 5.07 86.30 0.44 1.78 16 5 N -0.68 -19.54 5.58 -517.93 -2.89 -22.43 16 6 C 0.06 2.14 6.17 85.56 0.53 2.67 16 7 C 0.44 20.48 7.82 87.66 0.69 21.16 16 8 O -0.62 -33.76 15.78 -3.07 -0.05 -33.81 16 9 N -0.57 -29.25 5.29 -306.99 -1.62 -30.87 16 10 C -0.34 -18.99 9.68 84.04 0.81 -18.17 16 11 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 12 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 13 N -0.92 -49.54 13.05 21.66 0.28 -49.26 16 14 Si 0.99 42.61 29.55 68.60 2.03 44.64 16 15 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 16 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 18 C 0.13 2.04 5.06 86.38 0.44 2.48 16 19 N -0.71 -8.18 5.28 -463.06 -2.45 -10.63 16 20 C 0.51 7.79 7.82 87.66 0.69 8.48 16 21 O -0.58 -14.89 16.03 -3.03 -0.05 -14.93 16 22 C -0.06 -0.47 6.24 29.10 0.18 -0.28 16 23 C -0.21 -2.94 5.09 24.64 0.13 -2.82 16 24 C 0.02 0.41 11.25 83.66 0.94 1.36 16 25 N -0.51 -9.88 10.54 -203.75 -2.15 -12.03 16 26 C 0.01 0.15 12.23 130.65 1.60 1.75 16 27 S 0.15 1.89 23.22 -56.49 -1.31 0.58 16 28 H 0.07 0.79 7.18 -2.39 -0.02 0.77 16 29 H 0.05 1.18 7.75 -2.38 -0.02 1.16 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.34 10.38 8.43 -89.69 -0.76 9.62 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 37 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.42 2.26 7.66 -92.71 -0.71 1.55 16 41 H 0.15 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 44 H 0.22 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -78.00 391.02 -1.83 -79.83 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: -1.15 Total: 33.72 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 7.52 Total: 15.20 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -8.82 Total: -125.22 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: -0.10 Total: -48.74 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.31 Total: 0.58 kcal Total: -78.00 -1.83 -79.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753619941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.911 kcal (2) G-P(sol) polarization free energy of solvation -77.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds