Wall clock time and date at job start Sat Apr 11 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46980 * 2 1 4 4 C 1.46499 * 120.00020 * 275.00068 * 3 2 1 5 5 C 1.50696 * 109.47038 * 274.63588 * 4 3 2 6 6 H 1.07999 * 120.00169 * 4.82553 * 5 4 3 7 7 C 1.37877 * 120.00142 * 184.82615 * 5 4 3 8 8 N 1.31513 * 119.99802 * 5.20249 * 7 5 4 9 9 Si 1.86795 * 120.00158 * 185.19917 * 7 5 4 10 10 H 1.48502 * 109.46851 * 94.98730 * 9 7 5 11 11 H 1.48502 * 109.47226 * 214.98633 * 9 7 5 12 12 H 1.48499 * 109.47178 * 334.98974 * 9 7 5 13 13 S 1.65604 * 119.99666 * 95.00136 * 3 2 1 14 14 O 1.42100 * 106.40187 * 147.77155 * 13 3 2 15 15 O 1.42096 * 106.40136 * 14.84837 * 13 3 2 16 16 N 1.65599 * 107.21624 * 261.30932 * 13 3 2 17 17 C 1.46501 * 120.00248 * 64.94009 * 16 13 3 18 18 C 1.52994 * 109.47528 * 161.01137 * 17 16 13 19 19 C 1.52999 * 109.47384 * 185.11216 * 18 17 16 20 20 H 1.08994 * 110.05973 * 51.95415 * 19 18 17 21 21 C 1.54268 * 110.03412 * 173.37134 * 19 18 17 22 22 C 1.54886 * 104.20069 * 142.89097 * 21 19 18 23 23 C 1.54892 * 102.74460 * 322.05721 * 22 21 19 24 24 C 1.53880 * 110.03003 * 290.53042 * 19 18 17 25 25 F 1.39899 * 110.03084 * 0.02562 * 24 19 18 26 26 F 1.39902 * 110.02762 * 121.43210 * 24 19 18 27 27 H 1.08991 * 109.47239 * 299.99849 * 1 2 3 28 28 H 1.08998 * 109.47173 * 59.99822 * 1 2 3 29 29 H 1.09008 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46961 * 240.00161 * 2 1 3 31 31 H 1.08998 * 109.47173 * 120.00178 * 2 1 3 32 32 H 1.08995 * 109.47423 * 34.63928 * 4 3 2 33 33 H 1.09003 * 109.46549 * 154.64027 * 4 3 2 34 34 H 0.97000 * 120.00209 * 180.02562 * 8 7 5 35 35 H 0.96994 * 120.00275 * 244.94175 * 16 13 3 36 36 H 1.09004 * 109.46856 * 41.00818 * 17 16 13 37 37 H 1.09001 * 109.47425 * 281.01335 * 17 16 13 38 38 H 1.09000 * 109.47615 * 65.10463 * 18 17 16 39 39 H 1.09006 * 109.47283 * 305.10764 * 18 17 16 40 40 H 1.09004 * 110.48735 * 261.57092 * 21 19 18 41 41 H 1.09004 * 110.48633 * 24.07809 * 21 19 18 42 42 H 1.09000 * 110.75563 * 80.36629 * 22 21 19 43 43 H 1.08999 * 110.76147 * 203.74176 * 22 21 19 44 44 H 1.09006 * 110.48435 * 156.62228 * 23 22 21 45 45 H 1.08996 * 110.48717 * 279.26225 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4984 1.7958 -1.8779 6 1 4.1454 1.0637 -1.4178 7 6 3.8986 2.4443 -3.0269 8 7 3.1582 3.4078 -3.5300 9 14 5.4923 1.9544 -3.8691 10 1 5.2019 0.9746 -4.9466 11 1 6.1332 3.1591 -4.4550 12 1 6.4088 1.3400 -2.8752 13 16 2.4122 2.1201 1.4288 14 8 3.4759 3.0161 1.1372 15 8 2.5095 1.0882 2.4007 16 7 1.1193 3.0567 1.8689 17 6 -0.1608 2.4276 2.2035 18 6 -1.0161 3.4082 3.0082 19 6 -2.2980 2.7099 3.4663 20 1 -2.0546 1.7747 3.9705 21 6 -3.0913 3.6312 4.4159 22 6 -4.5734 3.3644 4.0538 23 6 -4.5247 3.1993 2.5145 24 6 -3.2095 2.4353 2.2573 25 9 -2.6048 2.9023 1.0854 26 9 -3.4648 1.0638 2.1514 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.3655 1.8051 -1.9476 33 1 2.0857 3.1800 -1.0763 34 1 3.4395 3.8638 -4.3386 35 1 1.2095 4.0217 1.9052 36 1 0.0191 1.5309 2.7965 37 1 -0.6837 2.1575 1.2860 38 1 -1.2719 4.2644 2.3840 39 1 -0.4564 3.7482 3.8796 40 1 -2.8986 3.3648 5.4552 41 1 -2.8348 4.6754 4.2369 42 1 -4.9287 2.4502 4.5293 43 1 -5.1979 4.2135 4.3317 44 1 -5.3782 2.6176 2.1661 45 1 -4.5014 4.1737 2.0268 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882592590.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:39 Heat of formation + Delta-G solvation = -193.099327 kcal Electronic energy + Delta-G solvation = -29750.416165 eV Core-core repulsion = 25371.770738 eV Total energy + Delta-G solvation = -4378.645427 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.09745 -47.12658 -38.23915 -36.61790 -35.99939 -35.47242 -35.09933 -32.61944 -31.61533 -29.93347 -28.29191 -26.70118 -26.51972 -23.14993 -22.87901 -21.67652 -21.52100 -20.46159 -18.68386 -17.89185 -17.41118 -16.93422 -16.60478 -16.50578 -16.20735 -15.74472 -15.20341 -14.99021 -14.72941 -14.31095 -14.22244 -13.87896 -13.65975 -13.44272 -13.34334 -13.21729 -12.89943 -12.57817 -12.29929 -12.12382 -12.05194 -11.93416 -11.82190 -11.63278 -11.55447 -11.47937 -11.39550 -11.28305 -11.11636 -10.94524 -10.86899 -10.79171 -10.68901 -10.41891 -10.27874 -9.93781 -9.70182 -9.17125 -8.39220 -8.01316 -6.01682 -4.04286 1.32441 3.34531 3.41026 3.46548 3.48556 3.53988 3.64041 3.87066 4.03957 4.20494 4.49159 4.57589 4.61656 4.77204 4.87729 4.92835 4.95493 5.08327 5.18263 5.25575 5.32703 5.33785 5.43699 5.46112 5.50528 5.56704 5.62605 5.71940 5.77739 5.82387 5.90026 5.95830 6.08283 6.18957 6.37260 6.65796 6.70423 7.19981 7.32554 7.48705 7.70095 7.97338 8.26622 8.97909 9.60084 11.07030 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018605 B = 0.003300 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.611077 B = 8483.346106 C = 8858.459454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.117 3.883 3 N -0.991 5.991 4 C 0.259 3.741 5 C -0.526 4.526 6 H 0.061 0.939 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 S 2.780 3.220 14 O -0.964 6.964 15 O -1.001 7.001 16 N -1.132 6.132 17 C 0.108 3.892 18 C -0.120 4.120 19 C -0.131 4.131 20 H 0.104 0.896 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.163 4.163 24 C 0.280 3.720 25 F -0.188 7.188 26 F -0.197 7.197 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.031 0.969 33 H 0.038 0.962 34 H 0.263 0.737 35 H 0.412 0.588 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.151 0.199 15.462 23.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.009 4.009 3 N -0.833 5.833 4 C 0.137 3.863 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.197 1.197 13 S 2.788 3.212 14 O -0.948 6.948 15 O -0.985 6.985 16 N -0.890 5.890 17 C -0.019 4.019 18 C -0.159 4.159 19 C -0.151 4.151 20 H 0.123 0.877 21 C -0.155 4.155 22 C -0.161 4.161 23 C -0.201 4.201 24 C 0.243 3.757 25 F -0.169 7.169 26 F -0.178 7.178 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.244 0.756 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.110 0.890 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.332 -0.001 15.739 23.411 hybrid contribution 0.517 0.157 -1.060 1.190 sum -16.814 0.157 14.679 22.321 Atomic orbital electron populations 1.22415 0.97322 1.01635 1.02311 1.21147 0.93111 0.83294 1.03397 1.57710 1.81032 1.21334 1.23212 1.19003 0.97074 0.91120 0.79072 1.21514 1.02721 1.23059 1.09246 0.92102 1.24932 0.97313 0.94544 0.97280 1.69930 1.38783 1.22746 1.22028 0.86501 0.83479 0.78031 0.79540 1.20721 1.21143 1.19723 1.01946 0.73153 0.73094 0.72988 1.93650 1.51030 1.65472 1.84602 1.93505 1.86543 1.58196 1.60261 1.56132 1.27002 1.20100 1.85798 1.21596 0.84418 0.95870 1.00004 1.21824 0.94055 0.99080 1.00930 1.22837 0.95325 1.02295 0.94662 0.87743 1.22425 0.93956 0.99843 0.99267 1.22482 0.97010 1.02906 0.93685 1.23368 0.95668 1.02184 0.98844 1.21857 0.93868 0.76470 0.83472 1.93019 1.84604 1.88101 1.51194 1.93027 1.94928 1.33262 1.96589 0.92948 0.91928 0.92177 0.89822 0.90570 0.95052 0.94446 0.92787 0.75552 0.90821 0.90305 0.89984 0.89903 0.90086 0.90206 0.90467 0.89981 0.88988 0.88316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 10.13 37.16 0.38 -2.36 16 2 C 0.12 2.13 6.36 -4.04 -0.03 2.11 16 3 N -0.99 -21.17 2.82 -115.66 -0.33 -21.49 16 4 C 0.26 6.60 5.11 -5.20 -0.03 6.57 16 5 C -0.53 -15.01 9.38 -34.44 -0.32 -15.33 16 6 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 7 C 0.06 1.77 5.45 -17.82 -0.10 1.67 16 8 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 9 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 S 2.78 57.09 6.05 -107.50 -0.65 56.44 16 14 O -0.96 -23.81 17.44 -57.17 -1.00 -24.80 16 15 O -1.00 -21.20 15.98 -57.17 -0.91 -22.12 16 16 N -1.13 -17.71 6.04 -10.61 -0.06 -17.77 16 17 C 0.11 1.44 4.76 -4.04 -0.02 1.42 16 18 C -0.12 -1.17 4.28 -26.73 -0.11 -1.28 16 19 C -0.13 -1.08 2.76 -89.50 -0.25 -1.33 16 20 H 0.10 0.84 8.01 -51.93 -0.42 0.43 16 21 C -0.12 -0.66 6.36 -25.07 -0.16 -0.82 16 22 C -0.12 -0.62 6.91 -24.74 -0.17 -0.80 16 23 C -0.16 -1.11 6.40 -25.07 -0.16 -1.27 16 24 C 0.28 2.73 2.33 -25.61 -0.06 2.67 16 25 F -0.19 -2.33 13.48 2.25 0.03 -2.30 16 26 F -0.20 -2.26 17.04 2.25 0.04 -2.22 16 27 H 0.05 0.76 4.64 -51.93 -0.24 0.52 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 30 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 31 H 0.08 1.33 6.87 -51.93 -0.36 0.97 16 32 H 0.03 0.81 8.11 -51.93 -0.42 0.38 16 33 H 0.04 1.01 7.84 -51.93 -0.41 0.61 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.41 5.67 8.68 -34.47 -0.30 5.37 16 36 H 0.07 0.99 7.54 -51.93 -0.39 0.59 16 37 H 0.08 1.12 4.34 -51.93 -0.23 0.89 16 38 H 0.08 0.78 7.55 -51.93 -0.39 0.39 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.41 7.85 -51.93 -0.41 0.00 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 45 H 0.10 0.62 8.12 -51.93 -0.42 0.20 16 LS Contribution 374.00 15.07 5.64 5.64 Total: -1.00 -34.84 374.00 -9.46 -44.30 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.90 Total: 1.71 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -1.03 Total: -8.76 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: 0.35 Total: -65.05 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -1.91 Total: -46.92 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.07 Total: -4.52 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 57.09 SS G_CDS: -0.65 Total: 56.44 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.84 -9.46 -44.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882592590.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.799 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds