Wall clock time and date at job start Sat Apr 11 2020 05:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46980 * 2 1 4 4 C 1.46499 * 120.00020 * 275.00068 * 3 2 1 5 5 C 1.50696 * 109.47038 * 274.63588 * 4 3 2 6 6 H 1.07999 * 120.00169 * 4.82553 * 5 4 3 7 7 C 1.37877 * 120.00142 * 184.82615 * 5 4 3 8 8 N 1.31513 * 119.99802 * 5.20249 * 7 5 4 9 9 Si 1.86795 * 120.00158 * 185.19917 * 7 5 4 10 10 H 1.48502 * 109.46851 * 94.98730 * 9 7 5 11 11 H 1.48502 * 109.47226 * 214.98633 * 9 7 5 12 12 H 1.48499 * 109.47178 * 334.98974 * 9 7 5 13 13 S 1.65604 * 119.99666 * 95.00136 * 3 2 1 14 14 O 1.42100 * 106.40187 * 147.77155 * 13 3 2 15 15 O 1.42096 * 106.40136 * 14.84837 * 13 3 2 16 16 N 1.65599 * 107.21624 * 261.30932 * 13 3 2 17 17 C 1.46501 * 120.00248 * 64.94009 * 16 13 3 18 18 C 1.52994 * 109.47528 * 161.01137 * 17 16 13 19 19 C 1.52999 * 109.47384 * 185.11216 * 18 17 16 20 20 H 1.08994 * 110.05973 * 51.95415 * 19 18 17 21 21 C 1.54268 * 110.03412 * 173.37134 * 19 18 17 22 22 C 1.54886 * 104.20069 * 142.89097 * 21 19 18 23 23 C 1.54892 * 102.74460 * 322.05721 * 22 21 19 24 24 C 1.53880 * 110.03003 * 290.53042 * 19 18 17 25 25 F 1.39899 * 110.03084 * 0.02562 * 24 19 18 26 26 F 1.39902 * 110.02762 * 121.43210 * 24 19 18 27 27 H 1.08991 * 109.47239 * 299.99849 * 1 2 3 28 28 H 1.08998 * 109.47173 * 59.99822 * 1 2 3 29 29 H 1.09008 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46961 * 240.00161 * 2 1 3 31 31 H 1.08998 * 109.47173 * 120.00178 * 2 1 3 32 32 H 1.08995 * 109.47423 * 34.63928 * 4 3 2 33 33 H 1.09003 * 109.46549 * 154.64027 * 4 3 2 34 34 H 0.97000 * 120.00209 * 180.02562 * 8 7 5 35 35 H 0.96994 * 120.00275 * 244.94175 * 16 13 3 36 36 H 1.09004 * 109.46856 * 41.00818 * 17 16 13 37 37 H 1.09001 * 109.47425 * 281.01335 * 17 16 13 38 38 H 1.09000 * 109.47615 * 65.10463 * 18 17 16 39 39 H 1.09006 * 109.47283 * 305.10764 * 18 17 16 40 40 H 1.09004 * 110.48735 * 261.57092 * 21 19 18 41 41 H 1.09004 * 110.48633 * 24.07809 * 21 19 18 42 42 H 1.09000 * 110.75563 * 80.36629 * 22 21 19 43 43 H 1.08999 * 110.76147 * 203.74176 * 22 21 19 44 44 H 1.09006 * 110.48435 * 156.62228 * 23 22 21 45 45 H 1.08996 * 110.48717 * 279.26225 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4984 1.7958 -1.8779 6 1 4.1454 1.0637 -1.4178 7 6 3.8986 2.4443 -3.0269 8 7 3.1582 3.4078 -3.5300 9 14 5.4923 1.9544 -3.8691 10 1 5.2019 0.9746 -4.9466 11 1 6.1332 3.1591 -4.4550 12 1 6.4088 1.3400 -2.8752 13 16 2.4122 2.1201 1.4288 14 8 3.4759 3.0161 1.1372 15 8 2.5095 1.0882 2.4007 16 7 1.1193 3.0567 1.8689 17 6 -0.1608 2.4276 2.2035 18 6 -1.0161 3.4082 3.0082 19 6 -2.2980 2.7099 3.4663 20 1 -2.0546 1.7747 3.9705 21 6 -3.0913 3.6312 4.4159 22 6 -4.5734 3.3644 4.0538 23 6 -4.5247 3.1993 2.5145 24 6 -3.2095 2.4353 2.2573 25 9 -2.6048 2.9023 1.0854 26 9 -3.4648 1.0638 2.1514 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.3655 1.8051 -1.9476 33 1 2.0857 3.1800 -1.0763 34 1 3.4395 3.8638 -4.3386 35 1 1.2095 4.0217 1.9052 36 1 0.0191 1.5309 2.7965 37 1 -0.6837 2.1575 1.2860 38 1 -1.2719 4.2644 2.3840 39 1 -0.4564 3.7482 3.8796 40 1 -2.8986 3.3648 5.4552 41 1 -2.8348 4.6754 4.2369 42 1 -4.9287 2.4502 4.5293 43 1 -5.1979 4.2135 4.3317 44 1 -5.3782 2.6176 2.1661 45 1 -4.5014 4.1737 2.0268 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882592590.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:38 Heat of formation + Delta-G solvation = -217.256471 kcal Electronic energy + Delta-G solvation = -29751.463698 eV Core-core repulsion = 25371.770738 eV Total energy + Delta-G solvation = -4379.692959 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.90922 -47.96387 -38.89882 -38.30714 -37.70962 -36.87781 -36.57683 -34.72186 -32.46912 -31.58031 -28.85553 -28.52290 -27.49944 -24.97556 -23.94965 -23.22632 -22.02287 -21.21567 -20.20738 -19.06650 -18.64692 -18.37084 -18.21509 -17.73070 -17.46439 -17.12291 -16.67825 -16.14322 -15.85579 -15.40344 -15.29528 -14.91126 -14.85737 -14.66915 -14.57219 -14.28032 -14.16737 -13.90360 -13.67985 -13.43980 -13.31494 -13.22267 -13.18066 -13.06657 -12.84018 -12.75628 -12.73493 -12.59843 -12.34253 -12.24306 -12.12593 -12.06437 -11.77695 -11.71911 -11.61514 -11.54887 -11.37010 -10.59167 -10.43443 -9.82288 -8.20339 -6.31197 -0.31336 1.38519 1.40317 1.51573 1.99870 2.40561 2.60519 2.83113 3.04341 3.09942 3.26049 3.36401 3.48362 3.84452 3.93146 4.02393 4.10045 4.23486 4.33144 4.36156 4.40763 4.43033 4.47296 4.51703 4.61356 4.69483 4.72559 4.86333 4.97381 5.01976 5.07318 5.11011 5.11927 5.15849 5.19877 5.23033 5.37022 5.38729 5.50818 5.70477 5.89219 6.09026 6.15917 6.76480 7.36975 8.87515 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018605 B = 0.003300 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.611077 B = 8483.346106 C = 8858.459454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.109 3.891 3 N -0.998 5.998 4 C 0.276 3.724 5 C -0.548 4.548 6 H 0.052 0.948 7 C 0.011 3.989 8 N -0.924 5.924 9 Si 0.958 3.042 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.274 1.274 13 S 2.794 3.206 14 O -1.010 7.010 15 O -1.008 7.008 16 N -1.118 6.118 17 C 0.099 3.901 18 C -0.115 4.115 19 C -0.129 4.129 20 H 0.106 0.894 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.161 4.161 24 C 0.262 3.738 25 F -0.208 7.208 26 F -0.211 7.211 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.024 0.976 33 H 0.016 0.984 34 H 0.267 0.733 35 H 0.422 0.578 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.292 0.123 16.740 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.016 4.016 3 N -0.839 5.839 4 C 0.153 3.847 5 C -0.587 4.587 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.564 5.564 9 Si 0.783 3.217 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.198 1.198 13 S 2.802 3.198 14 O -0.994 6.994 15 O -0.991 6.991 16 N -0.880 5.880 17 C -0.026 4.026 18 C -0.154 4.154 19 C -0.149 4.149 20 H 0.124 0.876 21 C -0.150 4.150 22 C -0.154 4.154 23 C -0.198 4.198 24 C 0.226 3.774 25 F -0.189 7.189 26 F -0.192 7.192 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.042 0.958 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.257 0.743 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.120 0.880 44 H 0.113 0.887 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.483 -0.096 17.025 25.130 hybrid contribution 0.808 0.153 -1.411 1.633 sum -17.675 0.057 15.614 23.585 Atomic orbital electron populations 1.22346 0.95005 1.03440 1.02108 1.21370 0.95075 0.81651 1.03545 1.57620 1.81585 1.22602 1.22065 1.18545 0.95596 0.90231 0.80369 1.21840 1.03895 1.23083 1.09873 0.92948 1.25763 1.00706 0.94473 0.97910 1.70023 1.40395 1.23468 1.22510 0.85541 0.79381 0.78112 0.78646 1.19094 1.20477 1.19832 1.01291 0.73179 0.72675 0.72621 1.93582 1.54024 1.66612 1.85205 1.93489 1.86939 1.58626 1.60074 1.55704 1.26909 1.20349 1.85074 1.21844 0.83423 0.97019 1.00359 1.21815 0.94316 0.98248 1.01008 1.22872 0.94550 1.02956 0.94526 0.87596 1.22451 0.93680 0.99568 0.99253 1.22504 0.96967 1.03960 0.91990 1.23412 0.94023 1.01927 1.00482 1.22467 0.95725 0.76051 0.83165 1.92976 1.85141 1.88277 1.52530 1.92993 1.95092 1.34498 1.96636 0.92217 0.93087 0.89336 0.90425 0.89646 0.95761 0.96610 0.92411 0.74296 0.90698 0.91195 0.89724 0.88209 0.88548 0.89412 0.90078 0.88036 0.88741 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.11 10.13 71.98 0.73 -4.38 16 2 C 0.11 3.96 6.36 86.38 0.55 4.51 16 3 N -1.00 -43.34 2.82 -519.85 -1.47 -44.81 16 4 C 0.28 14.46 5.11 85.63 0.44 14.90 16 5 C -0.55 -31.88 9.38 25.60 0.24 -31.64 16 6 H 0.05 3.06 7.82 -2.91 -0.02 3.04 16 7 C 0.01 0.63 5.45 84.65 0.46 1.09 16 8 N -0.92 -55.37 13.29 21.45 0.28 -55.09 16 9 Si 0.96 45.64 29.54 68.60 2.03 47.67 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 13 S 2.79 115.86 6.05 -56.49 -0.34 115.52 16 14 O -1.01 -51.13 17.44 -128.00 -2.23 -53.37 16 15 O -1.01 -42.30 15.98 -128.00 -2.05 -44.35 16 16 N -1.12 -34.67 6.04 -187.49 -1.13 -35.80 16 17 C 0.10 2.56 4.76 86.38 0.41 2.97 16 18 C -0.12 -2.04 4.28 30.59 0.13 -1.91 16 19 C -0.13 -1.88 2.76 -10.07 -0.03 -1.90 16 20 H 0.11 1.51 8.01 -2.39 -0.02 1.49 16 21 C -0.11 -0.91 6.36 31.67 0.20 -0.71 16 22 C -0.12 -0.84 6.91 31.89 0.22 -0.62 16 23 C -0.16 -1.90 6.40 31.67 0.20 -1.70 16 24 C 0.26 4.81 2.33 31.32 0.07 4.89 16 25 F -0.21 -5.08 13.48 44.97 0.61 -4.48 16 26 F -0.21 -4.70 17.04 44.97 0.77 -3.93 16 27 H 0.06 1.69 4.64 -2.39 -0.01 1.68 16 28 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.08 2.88 8.11 -2.38 -0.02 2.86 16 31 H 0.09 2.93 6.87 -2.39 -0.02 2.91 16 32 H 0.02 1.29 8.11 -2.39 -0.02 1.27 16 33 H 0.02 0.89 7.84 -2.39 -0.02 0.87 16 34 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.42 11.47 8.68 -96.75 -0.84 10.63 16 36 H 0.07 1.92 7.54 -2.38 -0.02 1.90 16 37 H 0.07 1.97 4.34 -2.39 -0.01 1.96 16 38 H 0.08 1.48 7.55 -2.39 -0.02 1.46 16 39 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.09 0.61 7.85 -2.38 -0.02 0.59 16 42 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.09 1.06 8.11 -2.38 -0.02 1.04 16 45 H 0.10 1.11 8.12 -2.39 -0.02 1.09 16 Total: -1.00 -75.52 374.00 0.26 -75.26 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.16 Total: 17.87 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 3.63 Total: -14.50 kcal Atomic # 7 Polarization: -133.38 SS G_CDS: -2.31 Total: -135.70 kcal Atomic # 8 Polarization: -93.44 SS G_CDS: -4.28 Total: -97.72 kcal Atomic # 9 Polarization: -9.78 SS G_CDS: 1.37 Total: -8.41 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 16 Polarization: 115.86 SS G_CDS: -0.34 Total: 115.52 kcal Total: -75.52 0.26 -75.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882592590.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.993 kcal (2) G-P(sol) polarization free energy of solvation -75.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds