Wall clock time and date at job start Sat Apr 11 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.47228 * 2 1 4 4 C 1.46498 * 120.00041 * 275.00304 * 3 2 1 5 5 C 1.50699 * 109.47268 * 274.99664 * 4 3 2 6 6 H 1.08003 * 119.99842 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00383 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00249 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99720 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47127 * 89.99836 * 9 7 5 11 11 H 1.48498 * 109.46883 * 209.99946 * 9 7 5 12 12 H 1.48502 * 109.46921 * 329.99567 * 9 7 5 13 13 S 1.65597 * 119.99748 * 94.99719 * 3 2 1 14 14 O 1.42097 * 106.40719 * 336.46506 * 13 3 2 15 15 O 1.42103 * 106.40095 * 203.54112 * 13 3 2 16 16 N 1.65604 * 107.21653 * 90.00435 * 13 3 2 17 17 C 1.47423 * 125.64846 * 89.96998 * 16 13 3 18 18 C 1.54909 * 104.83351 * 155.90823 * 17 16 13 19 19 C 1.55158 * 101.61642 * 36.99324 * 18 17 16 20 20 C 1.47016 * 125.64713 * 270.01869 * 16 13 3 21 21 H 1.09000 * 109.88531 * 300.43089 * 20 16 13 22 22 C 1.50699 * 109.88830 * 61.45020 * 20 16 13 23 23 N 1.31796 * 119.12165 * 44.72379 * 22 20 16 24 24 C 1.32329 * 120.81748 * 179.76333 * 23 22 20 25 25 C 1.38600 * 119.10654 * 0.50474 * 24 23 22 26 26 C 1.38596 * 118.39646 * 359.75446 * 25 24 23 27 27 N 1.31795 * 119.12071 * 225.00289 * 22 20 16 28 28 H 1.09003 * 109.47011 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47170 * 299.99605 * 1 2 3 30 30 H 1.09001 * 109.47014 * 60.00103 * 1 2 3 31 31 H 1.08997 * 109.47170 * 240.00395 * 2 1 3 32 32 H 1.09000 * 109.47534 * 119.99935 * 2 1 3 33 33 H 1.09008 * 109.47063 * 35.00013 * 4 3 2 34 34 H 1.08999 * 109.47097 * 154.99554 * 4 3 2 35 35 H 0.97003 * 120.00169 * 180.02562 * 8 7 5 36 36 H 1.09000 * 110.36544 * 37.07244 * 17 16 13 37 37 H 1.09002 * 110.37016 * 274.75170 * 17 16 13 38 38 H 1.09002 * 111.00594 * 155.08642 * 18 17 16 39 39 H 1.09002 * 111.00655 * 278.89906 * 18 17 16 40 40 H 1.08999 * 110.72042 * 82.87870 * 19 18 17 41 41 H 1.08993 * 110.72296 * 206.15536 * 19 18 17 42 42 H 1.08003 * 120.44930 * 180.28477 * 24 23 22 43 43 H 1.07996 * 120.80492 * 179.76817 * 25 24 23 44 44 H 1.08002 * 120.44716 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4948 1.7889 -1.8823 6 1 4.1721 1.1112 -1.3840 7 6 3.8525 2.3607 -3.0849 8 7 5.0186 2.0812 -3.6248 9 14 2.6807 3.5324 -3.9472 10 1 2.9451 4.9209 -3.4920 11 1 2.8851 3.4453 -5.4155 12 1 1.2804 3.1622 -3.6196 13 16 2.4122 2.1202 1.4287 14 8 1.6869 1.4415 2.4448 15 8 2.3057 3.5186 1.1998 16 7 4.0144 1.8137 1.7137 17 6 5.1424 2.6499 1.2644 18 6 6.2923 2.3283 2.2513 19 6 6.0841 0.8092 2.4892 20 6 4.5477 0.6621 2.4559 21 1 4.1540 0.6615 3.4723 22 6 4.1668 -0.6183 1.7583 23 7 4.2964 -0.6985 0.4492 24 6 3.9764 -1.8081 -0.1970 25 6 3.4902 -2.8897 0.5204 26 6 3.3631 -2.7655 1.8949 27 7 3.7079 -1.6261 2.4730 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3617 1.8098 -1.9453 34 1 2.0921 3.1803 -1.0755 35 1 5.2704 2.4838 -4.4707 36 1 4.8779 3.7058 1.3213 37 1 5.4300 2.3843 0.2472 38 1 7.2635 2.5230 1.7964 39 1 6.1787 2.8883 3.1795 40 1 6.5444 0.2272 1.6907 41 1 6.4795 0.5133 3.4608 42 1 4.0893 -1.8688 -1.2694 43 1 3.2171 -3.8072 0.0205 44 1 2.9881 -3.5877 2.4864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907336229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:58 Heat of formation + Delta-G solvation = -6.455688 kcal Electronic energy + Delta-G solvation = -30595.138967 eV Core-core repulsion = 26675.276202 eV Total energy + Delta-G solvation = -3919.862765 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.00499 -38.06121 -36.71095 -36.12020 -35.26121 -33.46125 -32.55561 -32.30158 -30.62182 -30.20914 -28.56397 -27.06762 -24.37177 -23.90530 -22.91344 -21.86443 -21.37618 -20.91548 -18.55128 -17.55816 -17.40883 -16.95153 -16.66890 -16.32147 -15.77866 -15.42505 -14.99446 -14.64606 -14.24659 -14.08770 -13.60136 -13.46175 -13.36013 -13.28233 -12.84091 -12.64906 -12.42405 -12.29719 -11.99949 -11.93234 -11.63485 -11.51105 -11.43772 -11.23455 -11.12691 -10.98348 -10.88196 -10.66127 -10.53513 -10.50392 -10.46653 -10.37962 -10.11234 -9.45531 -9.40707 -8.89382 -8.60668 -8.56109 -8.03225 -6.05873 -4.03735 0.97053 1.23779 1.33203 3.29382 3.34657 3.39009 3.41502 3.91266 3.99757 4.11735 4.36651 4.42884 4.66147 4.77677 4.85221 5.08370 5.15615 5.18214 5.24325 5.27914 5.30559 5.48943 5.58385 5.64583 5.69546 5.78234 5.91644 5.96080 5.97652 6.05794 6.08782 6.16325 6.30576 6.44074 6.52715 6.53350 6.56152 6.72270 6.76410 6.92132 7.18668 7.21678 7.47459 7.64697 8.33975 8.54601 9.13899 9.56794 11.05820 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010891 B = 0.006388 C = 0.006015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.319939 B = 4381.877144 C = 4654.270784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.137 3.863 3 N -0.977 5.977 4 C 0.215 3.785 5 C -0.535 4.535 6 H 0.107 0.893 7 C 0.077 3.923 8 N -0.894 5.894 9 Si 0.859 3.141 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.267 1.267 13 S 2.796 3.204 14 O -0.991 6.991 15 O -0.977 6.977 16 N -0.996 5.996 17 C 0.120 3.880 18 C -0.125 4.125 19 C -0.112 4.112 20 C 0.225 3.775 21 H 0.100 0.900 22 C 0.287 3.713 23 N -0.464 5.464 24 C 0.157 3.843 25 C -0.234 4.234 26 C 0.139 3.861 27 N -0.510 5.510 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.171 0.829 43 H 0.144 0.856 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.182 -8.677 9.788 13.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.010 3.990 3 N -0.817 5.817 4 C 0.091 3.909 5 C -0.574 4.574 6 H 0.124 0.876 7 C -0.125 4.125 8 N -0.533 5.533 9 Si 0.687 3.313 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.192 1.192 13 S 2.806 3.194 14 O -0.975 6.975 15 O -0.962 6.962 16 N -0.834 5.834 17 C -0.004 4.004 18 C -0.165 4.165 19 C -0.151 4.151 20 C 0.116 3.884 21 H 0.118 0.882 22 C 0.018 3.982 23 N -0.176 5.176 24 C -0.010 4.010 25 C -0.256 4.256 26 C -0.027 4.027 27 N -0.224 5.224 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.188 0.812 43 H 0.162 0.838 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.153 -7.222 10.602 12.829 hybrid contribution -0.685 -0.629 -1.582 1.835 sum -0.838 -7.850 9.020 11.987 Atomic orbital electron populations 1.22237 0.96982 1.01431 1.02379 1.21028 0.93356 0.83301 1.01310 1.57465 1.78269 1.22443 1.23512 1.19586 0.98572 0.91797 0.80940 1.21747 1.00881 1.28861 1.05881 0.87561 1.24809 0.94758 0.95997 0.96980 1.69885 1.20438 1.44154 1.18836 0.87114 0.82436 0.82645 0.79121 1.19977 1.21334 1.19172 1.01410 0.71899 0.73261 0.72830 1.93555 1.70127 1.76424 1.57401 1.93558 1.85737 1.30761 1.86128 1.59011 1.23926 1.32400 1.68026 1.22096 0.84536 0.94382 0.99429 1.22759 0.99150 0.94849 0.99695 1.22606 0.92093 0.97794 1.02640 1.19851 0.95608 0.79357 0.93611 0.88244 1.23706 0.91873 0.95025 0.87633 1.68470 1.14645 1.25546 1.08973 1.23409 0.89136 0.87025 1.01388 1.22949 1.03889 1.01999 0.96773 1.23117 0.92370 0.94686 0.92575 1.68178 1.11678 1.00836 1.41713 0.92354 0.92574 0.92054 0.90291 0.93095 0.95001 0.94351 0.92853 0.90430 0.88961 0.89829 0.90984 0.90124 0.90196 0.81212 0.83818 0.81932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 10.24 37.16 0.38 -2.40 16 2 C 0.14 2.50 4.07 -4.04 -0.02 2.48 16 3 N -0.98 -20.48 2.83 -115.66 -0.33 -20.81 16 4 C 0.21 5.03 4.50 -5.20 -0.02 5.01 16 5 C -0.53 -13.68 9.94 -34.44 -0.34 -14.02 16 6 H 0.11 2.81 7.33 -52.48 -0.38 2.43 16 7 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.89 -25.37 13.96 55.43 0.77 -24.60 16 9 Si 0.86 20.74 27.47 -169.99 -4.67 16.07 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 13 S 2.80 59.10 6.02 -107.50 -0.65 58.46 16 14 O -0.99 -21.53 16.69 -57.17 -0.95 -22.48 16 15 O -0.98 -23.12 16.01 -57.17 -0.92 -24.03 16 16 N -1.00 -18.21 3.27 -105.61 -0.35 -18.55 16 17 C 0.12 2.05 7.11 -2.53 -0.02 2.04 16 18 C -0.13 -1.59 7.08 -24.58 -0.17 -1.77 16 19 C -0.11 -1.44 6.48 -24.86 -0.16 -1.60 16 20 C 0.23 3.58 3.23 -68.08 -0.22 3.36 16 21 H 0.10 1.53 8.12 -51.93 -0.42 1.11 16 22 C 0.29 4.68 4.55 -157.19 -0.72 3.97 16 23 N -0.46 -7.86 8.12 -10.72 -0.09 -7.95 16 24 C 0.16 2.23 9.01 -17.20 -0.16 2.08 16 25 C -0.23 -2.59 10.13 -39.32 -0.40 -2.99 16 26 C 0.14 1.64 11.17 -17.20 -0.19 1.45 16 27 N -0.51 -7.69 10.23 -10.72 -0.11 -7.80 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.42 7.01 -51.93 -0.36 1.06 16 32 H 0.05 0.92 4.97 -51.93 -0.26 0.66 16 33 H 0.03 0.74 7.17 -51.92 -0.37 0.37 16 34 H 0.04 0.96 6.34 -51.93 -0.33 0.63 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.08 1.33 7.78 -51.93 -0.40 0.93 16 37 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.12 7.85 -51.93 -0.41 0.71 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.17 2.30 8.06 -52.48 -0.42 1.88 16 43 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -32.74 364.38 -10.26 -43.00 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.34 Total: 3.64 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -2.13 Total: -0.43 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -0.10 Total: -79.71 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -1.87 Total: -46.51 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Atomic # 16 Polarization: 59.10 SS G_CDS: -0.65 Total: 58.46 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.74 -10.26 -43.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907336229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.541 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds