Wall clock time and date at job start Sat Apr 11 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.47228 * 2 1 4 4 C 1.46498 * 120.00041 * 275.00304 * 3 2 1 5 5 C 1.50699 * 109.47268 * 274.99664 * 4 3 2 6 6 H 1.08003 * 119.99842 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00383 * 179.97438 * 5 4 3 8 8 N 1.31507 * 120.00249 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99720 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47127 * 89.99836 * 9 7 5 11 11 H 1.48498 * 109.46883 * 209.99946 * 9 7 5 12 12 H 1.48502 * 109.46921 * 329.99567 * 9 7 5 13 13 S 1.65597 * 119.99748 * 94.99719 * 3 2 1 14 14 O 1.42097 * 106.40719 * 336.46506 * 13 3 2 15 15 O 1.42103 * 106.40095 * 203.54112 * 13 3 2 16 16 N 1.65604 * 107.21653 * 90.00435 * 13 3 2 17 17 C 1.47423 * 125.64846 * 89.96998 * 16 13 3 18 18 C 1.54909 * 104.83351 * 155.90823 * 17 16 13 19 19 C 1.55158 * 101.61642 * 36.99324 * 18 17 16 20 20 C 1.47016 * 125.64713 * 270.01869 * 16 13 3 21 21 H 1.09000 * 109.88531 * 300.43089 * 20 16 13 22 22 C 1.50699 * 109.88830 * 61.45020 * 20 16 13 23 23 N 1.31796 * 119.12165 * 44.72379 * 22 20 16 24 24 C 1.32329 * 120.81748 * 179.76333 * 23 22 20 25 25 C 1.38600 * 119.10654 * 0.50474 * 24 23 22 26 26 C 1.38596 * 118.39646 * 359.75446 * 25 24 23 27 27 N 1.31795 * 119.12071 * 225.00289 * 22 20 16 28 28 H 1.09003 * 109.47011 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47170 * 299.99605 * 1 2 3 30 30 H 1.09001 * 109.47014 * 60.00103 * 1 2 3 31 31 H 1.08997 * 109.47170 * 240.00395 * 2 1 3 32 32 H 1.09000 * 109.47534 * 119.99935 * 2 1 3 33 33 H 1.09008 * 109.47063 * 35.00013 * 4 3 2 34 34 H 1.08999 * 109.47097 * 154.99554 * 4 3 2 35 35 H 0.97003 * 120.00169 * 180.02562 * 8 7 5 36 36 H 1.09000 * 110.36544 * 37.07244 * 17 16 13 37 37 H 1.09002 * 110.37016 * 274.75170 * 17 16 13 38 38 H 1.09002 * 111.00594 * 155.08642 * 18 17 16 39 39 H 1.09002 * 111.00655 * 278.89906 * 18 17 16 40 40 H 1.08999 * 110.72042 * 82.87870 * 19 18 17 41 41 H 1.08993 * 110.72296 * 206.15536 * 19 18 17 42 42 H 1.08003 * 120.44930 * 180.28477 * 24 23 22 43 43 H 1.07996 * 120.80492 * 179.76817 * 25 24 23 44 44 H 1.08002 * 120.44716 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4948 1.7889 -1.8823 6 1 4.1721 1.1112 -1.3840 7 6 3.8525 2.3607 -3.0849 8 7 5.0186 2.0812 -3.6248 9 14 2.6807 3.5324 -3.9472 10 1 2.9451 4.9209 -3.4920 11 1 2.8851 3.4453 -5.4155 12 1 1.2804 3.1622 -3.6196 13 16 2.4122 2.1202 1.4287 14 8 1.6869 1.4415 2.4448 15 8 2.3057 3.5186 1.1998 16 7 4.0144 1.8137 1.7137 17 6 5.1424 2.6499 1.2644 18 6 6.2923 2.3283 2.2513 19 6 6.0841 0.8092 2.4892 20 6 4.5477 0.6621 2.4559 21 1 4.1540 0.6615 3.4723 22 6 4.1668 -0.6183 1.7583 23 7 4.2964 -0.6985 0.4492 24 6 3.9764 -1.8081 -0.1970 25 6 3.4902 -2.8897 0.5204 26 6 3.3631 -2.7655 1.8949 27 7 3.7079 -1.6261 2.4730 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3617 1.8098 -1.9453 34 1 2.0921 3.1803 -1.0755 35 1 5.2704 2.4838 -4.4707 36 1 4.8779 3.7058 1.3213 37 1 5.4300 2.3843 0.2472 38 1 7.2635 2.5230 1.7964 39 1 6.1787 2.8883 3.1795 40 1 6.5444 0.2272 1.6907 41 1 6.4795 0.5133 3.4608 42 1 4.0893 -1.8688 -1.2694 43 1 3.2171 -3.8072 0.0205 44 1 2.9881 -3.5877 2.4864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907336229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:58 Heat of formation + Delta-G solvation = -30.249408 kcal Electronic energy + Delta-G solvation = -30596.170740 eV Core-core repulsion = 26675.276202 eV Total energy + Delta-G solvation = -3920.894538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.07755 -39.28432 -38.43592 -37.77660 -37.00680 -34.58449 -34.51298 -33.36189 -31.92014 -31.80800 -29.73172 -28.89076 -25.40480 -25.04564 -24.60045 -23.35882 -22.84167 -22.06914 -20.01686 -19.11956 -18.90979 -18.47917 -18.35440 -17.50371 -17.35754 -16.66177 -16.25178 -16.07471 -15.74488 -15.59402 -14.98757 -14.85733 -14.62703 -14.49881 -14.32466 -14.10712 -14.06492 -13.76543 -13.59020 -13.49205 -13.32157 -13.17910 -12.83393 -12.78838 -12.66930 -12.57570 -12.25777 -12.13724 -12.03670 -11.85034 -11.72709 -11.62032 -11.61691 -11.33549 -10.66260 -10.47531 -10.00184 -9.99079 -9.73909 -8.14962 -6.14869 -0.43551 -0.00446 0.31356 1.35859 1.41240 1.46001 1.83035 2.40856 2.46541 2.88385 2.91297 3.10714 3.18556 3.41062 3.66123 3.79264 3.85491 3.88047 4.07956 4.25219 4.25772 4.31109 4.31429 4.39443 4.52970 4.54482 4.68809 4.76767 4.80275 4.89991 4.92048 4.94906 4.96611 5.06385 5.11223 5.19457 5.23134 5.36138 5.43399 5.44600 5.55237 5.58980 5.84791 6.20721 6.48674 7.05086 7.27391 7.47454 8.98629 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010891 B = 0.006388 C = 0.006015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.319939 B = 4381.877144 C = 4654.270784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.136 3.864 3 N -0.981 5.981 4 C 0.223 3.777 5 C -0.521 4.521 6 H 0.093 0.907 7 C 0.030 3.970 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.252 1.252 13 S 2.801 3.199 14 O -0.999 6.999 15 O -1.010 7.010 16 N -0.996 5.996 17 C 0.116 3.884 18 C -0.112 4.112 19 C -0.102 4.102 20 C 0.214 3.786 21 H 0.103 0.897 22 C 0.270 3.730 23 N -0.498 5.498 24 C 0.133 3.867 25 C -0.208 4.208 26 C 0.135 3.865 27 N -0.526 5.526 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.040 0.960 34 H 0.024 0.976 35 H 0.261 0.739 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.167 0.833 43 H 0.185 0.815 44 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 -10.488 10.836 15.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.010 3.990 3 N -0.820 5.820 4 C 0.099 3.901 5 C -0.561 4.561 6 H 0.111 0.889 7 C -0.169 4.169 8 N -0.572 5.572 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.176 1.176 13 S 2.812 3.188 14 O -0.983 6.983 15 O -0.994 6.994 16 N -0.835 5.835 17 C -0.009 4.009 18 C -0.151 4.151 19 C -0.141 4.141 20 C 0.106 3.894 21 H 0.121 0.879 22 C 0.000 4.000 23 N -0.211 5.211 24 C -0.032 4.032 25 C -0.230 4.230 26 C -0.030 4.030 27 N -0.240 5.240 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.131 0.869 42 H 0.184 0.816 43 H 0.202 0.798 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.821 -9.058 11.655 14.784 hybrid contribution -0.460 -0.201 -1.856 1.923 sum -1.281 -9.259 9.799 13.542 Atomic orbital electron populations 1.22232 0.95288 1.03426 1.01802 1.21173 0.94655 0.81769 1.01423 1.57404 1.78869 1.23458 1.22299 1.19326 0.97505 0.91288 0.82027 1.21892 1.01394 1.27484 1.05284 0.88950 1.25400 0.95944 0.97557 0.97957 1.69991 1.22049 1.45734 1.19405 0.86361 0.81617 0.80595 0.78306 1.20545 1.20932 1.17633 1.01024 0.72518 0.72520 0.72757 1.93530 1.70947 1.76310 1.57510 1.93508 1.86569 1.32813 1.86533 1.58785 1.23072 1.33662 1.67977 1.22103 0.85947 0.93738 0.99077 1.22757 0.97847 0.95031 0.99429 1.22603 0.90054 0.97529 1.03935 1.20150 0.97353 0.78659 0.93262 0.87911 1.23585 0.93251 0.95562 0.87574 1.68366 1.15908 1.27256 1.09616 1.23551 0.90362 0.87737 1.01590 1.23274 1.01125 1.02115 0.96451 1.23852 0.91271 0.94574 0.93349 1.68190 1.12035 1.01670 1.42124 0.89107 0.93624 0.92108 0.90318 0.92806 0.94234 0.95835 0.92961 0.91246 0.92464 0.88182 0.88624 0.91411 0.86917 0.81618 0.79794 0.77969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.17 10.24 71.98 0.74 -4.44 16 2 C 0.14 4.83 4.07 86.38 0.35 5.18 16 3 N -0.98 -41.27 2.83 -519.83 -1.47 -42.74 16 4 C 0.22 10.54 4.50 85.63 0.39 10.93 16 5 C -0.52 -27.21 9.94 25.60 0.25 -26.95 16 6 H 0.09 5.06 7.33 -2.91 -0.02 5.04 16 7 C 0.03 1.64 5.47 84.66 0.46 2.11 16 8 N -0.93 -54.00 13.96 21.45 0.30 -53.70 16 9 Si 0.91 42.81 27.47 68.60 1.88 44.70 16 10 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 13 S 2.80 119.88 6.02 -56.49 -0.34 119.54 16 14 O -1.00 -43.27 16.69 -128.00 -2.14 -45.41 16 15 O -1.01 -48.93 16.01 -128.00 -2.05 -50.98 16 16 N -1.00 -36.84 3.27 -488.03 -1.60 -38.44 16 17 C 0.12 4.08 7.11 86.86 0.62 4.69 16 18 C -0.11 -2.70 7.08 31.99 0.23 -2.48 16 19 C -0.10 -2.50 6.48 31.80 0.21 -2.29 16 20 C 0.21 6.70 3.23 44.62 0.14 6.85 16 21 H 0.10 3.08 8.12 -2.39 -0.02 3.06 16 22 C 0.27 8.62 4.55 138.75 0.63 9.25 16 23 N -0.50 -16.90 8.12 -187.84 -1.53 -18.43 16 24 C 0.13 3.68 9.01 84.70 0.76 4.44 16 25 C -0.21 -4.01 10.13 22.44 0.23 -3.78 16 26 C 0.14 2.78 11.17 84.70 0.95 3.72 16 27 N -0.53 -14.90 10.23 -187.84 -1.92 -16.82 16 28 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 2.78 7.01 -2.39 -0.02 2.76 16 32 H 0.05 1.89 4.97 -2.39 -0.01 1.88 16 33 H 0.04 1.81 7.17 -2.38 -0.02 1.79 16 34 H 0.02 1.19 6.34 -2.39 -0.02 1.18 16 35 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 36 H 0.07 2.49 7.78 -2.39 -0.02 2.47 16 37 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 1.85 7.85 -2.39 -0.02 1.83 16 41 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.17 4.52 8.06 -2.91 -0.02 4.50 16 43 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 44 H 0.20 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -72.47 364.38 -1.95 -74.42 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.95 Total: 20.63 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 5.95 Total: 7.23 kcal Atomic # 7 Polarization: -163.91 SS G_CDS: -6.21 Total: -170.12 kcal Atomic # 8 Polarization: -92.21 SS G_CDS: -4.19 Total: -96.39 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.70 kcal Atomic # 16 Polarization: 119.88 SS G_CDS: -0.34 Total: 119.54 kcal Total: -72.47 -1.95 -74.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907336229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.172 kcal (2) G-P(sol) polarization free energy of solvation -72.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds