Wall clock time and date at job start Sat Apr 11 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47277 * 2 1 4 4 C 1.46497 * 119.99528 * 275.54696 * 3 2 1 5 5 C 1.50695 * 109.47065 * 274.99628 * 4 3 2 6 6 H 1.08001 * 120.00497 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99928 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99961 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00281 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47346 * 89.99692 * 9 7 5 11 11 H 1.48498 * 109.47344 * 209.99867 * 9 7 5 12 12 H 1.48503 * 109.46797 * 329.99928 * 9 7 5 13 13 S 1.65598 * 120.00297 * 95.54514 * 3 2 1 14 14 O 1.42100 * 106.40270 * 161.46563 * 13 3 2 15 15 O 1.42098 * 106.40182 * 28.53698 * 13 3 2 16 16 N 1.65606 * 107.21832 * 274.99988 * 13 3 2 17 17 C 1.47430 * 125.64729 * 95.27352 * 16 13 3 18 18 C 1.54686 * 104.94162 * 204.07380 * 17 16 13 19 19 C 1.55157 * 101.68057 * 323.28400 * 18 17 16 20 20 C 1.47019 * 125.65215 * 275.59133 * 16 13 3 21 21 H 1.08997 * 109.88541 * 59.32327 * 20 16 13 22 22 C 1.50706 * 109.87583 * 298.31728 * 20 16 13 23 23 N 1.31788 * 119.12336 * 313.24576 * 22 20 16 24 24 C 1.32340 * 120.81615 * 179.76272 * 23 22 20 25 25 C 1.38590 * 119.10423 * 0.50208 * 24 23 22 26 26 C 1.38596 * 118.40251 * 359.75556 * 25 24 23 27 27 N 1.31797 * 119.11795 * 133.51809 * 22 20 16 28 28 H 1.08997 * 109.46907 * 184.97988 * 1 2 3 29 29 H 1.09005 * 109.46842 * 304.98036 * 1 2 3 30 30 H 1.09000 * 109.47037 * 64.98174 * 1 2 3 31 31 H 1.08997 * 109.47293 * 239.99410 * 2 1 3 32 32 H 1.09003 * 109.46894 * 119.99307 * 2 1 3 33 33 H 1.09000 * 109.47164 * 34.99905 * 4 3 2 34 34 H 1.09002 * 109.47281 * 154.99884 * 4 3 2 35 35 H 0.96998 * 120.00037 * 179.97438 * 8 7 5 36 36 H 1.08999 * 110.36747 * 323.01038 * 17 16 13 37 37 H 1.08996 * 110.36019 * 85.32701 * 17 16 13 38 38 H 1.08999 * 111.10343 * 205.10517 * 18 17 16 39 39 H 1.09002 * 110.81343 * 81.32740 * 18 17 16 40 40 H 1.08997 * 110.71535 * 276.97150 * 19 18 17 41 41 H 1.08993 * 110.87509 * 153.76944 * 19 18 17 42 42 H 1.08001 * 120.44802 * 180.23112 * 24 23 22 43 43 H 1.08004 * 120.80258 * 179.73048 * 25 24 23 44 44 H 1.07999 * 120.45405 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1469 2.1126 -1.2628 5 6 3.4778 1.7947 -1.8942 6 1 4.1596 1.1155 -1.4041 7 6 3.8251 2.3711 -3.0976 8 7 4.9868 2.0940 -3.6484 9 14 2.6463 3.5465 -3.9451 10 1 2.9152 4.9332 -3.4870 11 1 2.8378 3.4651 -5.4155 12 1 1.2488 3.1755 -3.6066 13 16 2.4251 2.1157 1.4274 14 8 3.2445 3.2260 1.0881 15 8 2.8436 1.0806 2.3063 16 7 1.0332 2.7413 2.0708 17 6 0.1767 2.0801 3.0722 18 6 -1.2210 2.7154 2.8834 19 6 -0.8553 4.1870 2.5545 20 6 0.4435 4.0450 1.7332 21 1 0.2174 4.0849 0.6677 22 6 1.4021 5.1501 2.0952 23 7 1.9879 5.1301 3.2756 24 6 2.8389 6.0810 3.6263 25 6 3.1022 7.1113 2.7377 26 6 2.4630 7.1008 1.5079 27 7 1.6282 6.1137 1.2249 28 1 -0.3633 -1.0238 0.0892 29 1 -0.3633 0.5892 0.8421 30 1 -0.3633 0.4346 -0.9312 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.3443 1.8158 -1.9379 34 1 2.0826 3.1836 -1.0706 35 1 5.2310 2.4992 -4.4952 36 1 0.1345 1.0069 2.8860 37 1 0.5477 2.2771 4.0779 38 1 -1.8071 2.6540 3.8003 39 1 -1.7493 2.2489 2.0519 40 1 -0.6738 4.7527 3.4683 41 1 -1.6379 4.6581 1.9599 42 1 3.3184 6.0567 4.5938 43 1 3.7886 7.9037 2.9973 44 1 2.6435 7.8875 0.7904 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907336230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:00 Heat of formation + Delta-G solvation = -12.353227 kcal Electronic energy + Delta-G solvation = -29721.005238 eV Core-core repulsion = 25800.886736 eV Total energy + Delta-G solvation = -3920.118502 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.99295 -38.36443 -36.68339 -36.14981 -35.17403 -33.56321 -32.58229 -32.43526 -30.88625 -30.25994 -28.82970 -27.11555 -24.49099 -24.10795 -22.91522 -22.06890 -21.40161 -21.23109 -18.68849 -17.63580 -17.58350 -16.93579 -16.63080 -16.49705 -16.04076 -15.43507 -15.07286 -14.71346 -14.27097 -14.13652 -13.77613 -13.65136 -13.47319 -13.37411 -13.27724 -12.76722 -12.56335 -12.45993 -11.99197 -11.94666 -11.82071 -11.52030 -11.39852 -11.32042 -11.22656 -11.09501 -10.93991 -10.91407 -10.74358 -10.65421 -10.44989 -10.36802 -10.17830 -9.53413 -9.48731 -9.12218 -8.94174 -8.56448 -8.11411 -6.06150 -4.05250 0.91648 1.13566 1.23005 3.29585 3.35015 3.37347 3.41269 3.74746 3.91743 4.10721 4.23694 4.41289 4.47247 4.62354 4.67323 4.86193 5.02564 5.05583 5.17913 5.22122 5.25029 5.34433 5.39221 5.48540 5.57357 5.63598 5.66703 5.70939 5.75218 5.77762 5.84392 5.98412 6.10451 6.21887 6.26458 6.39712 6.47029 6.52883 6.59122 6.80241 7.10638 7.13683 7.44834 7.61274 8.21536 8.51171 8.97922 9.53308 11.07358 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010324 B = 0.006139 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.570926 B = 4560.271328 C = 5898.957186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.115 3.885 3 N -0.984 5.984 4 C 0.228 3.772 5 C -0.531 4.531 6 H 0.076 0.924 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.872 3.128 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.264 1.264 13 S 2.792 3.208 14 O -0.956 6.956 15 O -0.986 6.986 16 N -1.007 6.007 17 C 0.125 3.875 18 C -0.127 4.127 19 C -0.112 4.112 20 C 0.222 3.778 21 H 0.102 0.898 22 C 0.316 3.684 23 N -0.505 5.505 24 C 0.147 3.853 25 C -0.232 4.232 26 C 0.154 3.846 27 N -0.502 5.502 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.033 0.967 34 H 0.030 0.970 35 H 0.264 0.736 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.165 0.835 43 H 0.145 0.855 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.032 6.238 14.322 20.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.011 4.011 3 N -0.825 5.825 4 C 0.105 3.895 5 C -0.570 4.570 6 H 0.094 0.906 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.698 3.302 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.189 1.189 13 S 2.802 3.198 14 O -0.939 6.939 15 O -0.971 6.971 16 N -0.844 5.844 17 C -0.001 4.001 18 C -0.166 4.166 19 C -0.152 4.152 20 C 0.112 3.888 21 H 0.120 0.880 22 C 0.046 3.954 23 N -0.219 5.219 24 C -0.019 4.019 25 C -0.254 4.254 26 C -0.012 4.012 27 N -0.216 5.216 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.182 0.818 43 H 0.163 0.837 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -13.574 5.551 14.258 20.453 hybrid contribution 0.148 1.433 -0.625 1.571 sum -13.426 6.984 13.632 20.368 Atomic orbital electron populations 1.22298 0.97094 1.01468 1.02259 1.21188 0.93093 0.82939 1.03889 1.57601 1.81038 1.21405 1.22474 1.19417 0.98174 0.91050 0.80876 1.21365 1.01144 1.28668 1.05796 0.90584 1.24854 0.95089 0.96037 0.96895 1.69902 1.20957 1.44029 1.18564 0.86922 0.81964 0.82367 0.78933 1.19720 1.21029 1.18865 1.01724 0.72476 0.73183 0.72460 1.93613 1.63594 1.53080 1.83662 1.93525 1.79686 1.58143 1.65702 1.59438 1.44750 1.25388 1.54851 1.21888 0.89298 0.96654 0.92238 1.22754 0.96588 0.94744 1.02474 1.22606 0.94590 0.97895 1.00095 1.19865 0.89736 0.78827 1.00335 0.88039 1.23313 0.93323 0.93171 0.85543 1.68095 1.08948 1.25711 1.19152 1.23164 0.91374 0.88203 0.99197 1.22853 1.03368 1.02072 0.97064 1.23174 0.89125 0.94554 0.94387 1.68137 1.17062 1.02824 1.33576 0.92050 0.92956 0.92105 0.89383 0.90564 0.94925 0.95183 0.92578 0.90595 0.91149 0.89854 0.90317 0.90313 0.89722 0.81767 0.83719 0.81584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.23 37.16 0.38 -1.92 16 2 C 0.12 2.02 6.41 -4.04 -0.03 1.99 16 3 N -0.98 -20.79 2.83 -115.66 -0.33 -21.12 16 4 C 0.23 5.54 4.19 -5.20 -0.02 5.52 16 5 C -0.53 -15.50 9.94 -34.44 -0.34 -15.84 16 6 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 7 C 0.07 2.19 5.47 -17.82 -0.10 2.09 16 8 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 9 Si 0.87 21.65 27.47 -169.99 -4.67 16.99 16 10 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 13 S 2.79 59.23 6.29 -107.50 -0.68 58.55 16 14 O -0.96 -23.93 15.25 -57.17 -0.87 -24.80 16 15 O -0.99 -22.13 16.32 -57.17 -0.93 -23.06 16 16 N -1.01 -16.20 3.30 -105.77 -0.35 -16.55 16 17 C 0.12 1.51 6.49 -2.65 -0.02 1.49 16 18 C -0.13 -1.12 7.07 -24.70 -0.17 -1.29 16 19 C -0.11 -1.16 6.47 -24.90 -0.16 -1.32 16 20 C 0.22 3.30 3.50 -68.11 -0.24 3.06 16 21 H 0.10 1.54 8.12 -51.93 -0.42 1.12 16 22 C 0.32 5.27 4.90 -157.19 -0.77 4.50 16 23 N -0.51 -8.04 10.09 -10.72 -0.11 -8.15 16 24 C 0.15 1.92 11.30 -17.20 -0.19 1.72 16 25 C -0.23 -2.73 10.17 -39.32 -0.40 -3.13 16 26 C 0.15 2.12 11.31 -17.20 -0.19 1.92 16 27 N -0.50 -8.51 10.32 -10.72 -0.11 -8.62 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.63 6.84 -51.93 -0.36 0.27 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.09 1.60 8.11 -51.93 -0.42 1.18 16 32 H 0.08 1.29 6.98 -51.93 -0.36 0.93 16 33 H 0.03 0.75 7.17 -51.93 -0.37 0.38 16 34 H 0.03 0.75 6.89 -51.93 -0.36 0.40 16 35 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 36 H 0.08 0.86 7.33 -51.93 -0.38 0.48 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.82 7.79 -51.93 -0.40 0.42 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 44 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 372.67 15.07 5.62 5.62 Total: -1.00 -38.40 372.67 -10.38 -48.78 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.47 Total: 0.83 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -2.26 Total: -1.21 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -0.12 Total: -81.69 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -1.81 Total: -47.86 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.99 kcal Atomic # 16 Polarization: 59.23 SS G_CDS: -0.68 Total: 58.55 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -38.40 -10.38 -48.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907336230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.431 kcal (2) G-P(sol) polarization free energy of solvation -38.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds