Wall clock time and date at job start Sat Apr 11 2020 05:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99896 * 2 1 4 4 C 1.53241 * 109.34184 * 187.25757 * 3 2 1 5 5 N 1.47077 * 108.51843 * 306.17010 * 4 3 2 6 6 S 1.65602 * 120.87884 * 231.18746 * 5 4 3 7 7 O 1.42095 * 106.40328 * 336.45895 * 6 5 4 8 8 O 1.42102 * 106.40133 * 203.53641 * 6 5 4 9 9 C 1.76194 * 107.21887 * 89.99870 * 6 5 4 10 10 C 1.38889 * 120.33739 * 270.02159 * 9 6 5 11 11 C 1.38299 * 118.50632 * 179.70720 * 10 9 6 12 12 C 1.39142 * 119.09605 * 0.51186 * 11 10 9 13 13 N 1.39004 * 119.70308 * 179.75098 * 12 11 10 14 14 C 1.46499 * 120.00058 * 359.73127 * 13 12 11 15 15 C 1.50701 * 109.46992 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47294 * 60.00559 * 19 17 15 21 21 H 1.48503 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47431 * 300.00157 * 19 17 15 23 23 N 1.32394 * 120.58848 * 359.47667 * 12 11 10 24 24 C 1.31976 * 121.62227 * 0.27767 * 23 12 11 25 25 C 1.47083 * 118.24015 * 51.45542 * 5 4 3 26 26 C 1.46897 * 111.00521 * 124.30158 * 2 1 3 27 27 H 1.08995 * 109.47377 * 59.99915 * 1 2 3 28 28 H 1.09004 * 109.47077 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46933 * 299.99916 * 1 2 3 30 30 H 1.08990 * 109.49660 * 67.29245 * 3 2 1 31 31 H 1.09003 * 109.51342 * 307.22416 * 3 2 1 32 32 H 1.08998 * 109.63074 * 186.45786 * 4 3 2 33 33 H 1.08998 * 109.62641 * 65.87441 * 4 3 2 34 34 H 1.07997 * 120.74471 * 359.97438 * 10 9 6 35 35 H 1.07994 * 120.44913 * 180.28437 * 11 10 9 36 36 H 0.97000 * 119.99521 * 179.72334 * 13 12 11 37 37 H 1.09002 * 109.47391 * 59.99649 * 14 13 12 38 38 H 1.09001 * 109.46813 * 299.99705 * 14 13 12 39 39 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 40 40 H 1.08002 * 119.56892 * 179.97438 * 24 23 12 41 41 H 1.08999 * 109.62814 * 68.25175 * 25 5 4 42 42 H 1.09000 * 109.62656 * 188.83343 * 25 5 4 43 43 H 1.09008 * 109.49062 * 292.70460 * 26 2 1 44 44 H 1.08998 * 109.49420 * 52.75516 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5163 1.3313 -0.1827 5 7 4.0869 0.4461 0.8440 6 16 5.3385 0.9528 1.8028 7 8 5.9981 1.9883 1.0876 8 8 5.9983 -0.2216 2.2552 9 6 4.6306 1.7065 3.2294 10 6 4.3482 3.0664 3.2373 11 6 3.7872 3.6174 4.3750 12 6 3.5361 2.7975 5.4708 13 7 2.9773 3.3392 6.6226 14 6 2.6610 4.7684 6.6810 15 6 2.0696 5.0974 8.0275 16 1 1.9424 4.3197 8.7660 17 6 1.6917 6.3914 8.3170 18 7 1.8470 7.3385 7.4179 19 14 0.9593 6.7992 9.9863 20 1 1.9384 6.4646 11.0516 21 1 0.6386 8.2479 10.0456 22 1 -0.2818 6.0093 10.1888 23 7 3.8195 1.5051 5.4242 24 6 4.3506 0.9514 4.3504 25 6 3.5204 -0.9031 0.9926 26 6 1.9955 -0.7728 1.1328 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.7555 1.8532 0.9478 31 1 1.5456 1.9341 -0.8181 32 1 3.9254 2.3352 -0.0691 33 1 3.7560 0.9451 -1.1733 34 1 4.5580 3.6788 2.3729 35 1 3.5507 4.6704 4.4136 36 1 2.7967 2.7708 7.3875 37 1 1.9423 5.0138 5.8991 38 1 3.5718 5.3485 6.5323 39 1 1.5809 8.2488 7.6215 40 1 4.5689 -0.1063 4.3487 41 1 3.7606 -1.4999 0.1127 42 1 3.9323 -1.3770 1.8835 43 1 1.7556 -0.2612 2.0650 44 1 1.5453 -1.7655 1.1365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912728251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:05 Heat of formation + Delta-G solvation = -23.178196 kcal Electronic energy + Delta-G solvation = -27747.607234 eV Core-core repulsion = 23827.019327 eV Total energy + Delta-G solvation = -3920.587908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.88499 -39.11584 -37.24385 -35.81430 -35.61834 -34.82019 -32.93806 -32.21124 -31.41708 -29.87463 -28.27046 -27.02562 -24.20412 -24.12452 -23.92757 -23.01218 -21.78833 -20.85326 -18.94264 -18.12402 -17.79675 -17.27147 -16.48843 -16.18916 -15.84586 -15.43193 -15.26372 -15.11905 -14.86781 -14.52984 -14.39289 -14.29047 -14.16497 -13.52826 -13.12276 -13.05713 -12.81567 -12.67731 -12.53693 -12.38354 -12.22847 -12.20264 -12.00811 -11.99994 -11.55333 -11.37130 -11.19702 -11.11920 -11.07850 -10.89479 -10.39443 -10.25951 -9.68487 -9.57183 -9.45809 -9.17410 -8.76891 -8.59769 -7.41486 -6.39960 -4.47234 0.43513 1.20875 1.57333 2.91651 3.13793 3.18983 3.20294 3.60423 3.68897 3.80530 4.04277 4.19437 4.27569 4.43535 4.69738 4.78921 4.82673 4.92947 4.97983 4.99766 5.03671 5.13474 5.24092 5.28957 5.35470 5.37495 5.42864 5.52005 5.59411 5.64092 5.80354 5.81286 5.94309 6.07894 6.18250 6.36123 6.63227 6.70954 6.71160 6.88830 7.07338 7.34190 7.51043 7.67875 8.20870 8.35605 8.64076 9.20320 10.70304 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.002803 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.459758 B = 9987.111296 C =10800.163949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.038 3.962 4 C 0.128 3.872 5 N -1.003 6.003 6 S 2.707 3.293 7 O -0.963 6.963 8 O -0.964 6.964 9 C -0.816 4.816 10 C 0.055 3.945 11 C -0.254 4.254 12 C 0.447 3.553 13 N -0.682 5.682 14 C 0.247 3.753 15 C -0.547 4.547 16 H 0.065 0.935 17 C 0.067 3.933 18 N -0.887 5.887 19 Si 0.908 3.092 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.274 1.274 23 N -0.567 5.567 24 C 0.254 3.746 25 C 0.128 3.872 26 C 0.038 3.962 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.402 0.598 37 H 0.030 0.970 38 H 0.031 0.969 39 H 0.269 0.731 40 H 0.161 0.839 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.042 0.958 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.377 -13.780 -15.931 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.092 4.092 4 C 0.003 3.997 5 N -0.841 5.841 6 S 2.799 3.201 7 O -0.953 6.953 8 O -0.954 6.954 9 C -0.913 4.913 10 C 0.028 3.972 11 C -0.280 4.280 12 C 0.206 3.794 13 N -0.302 5.302 14 C 0.126 3.874 15 C -0.586 4.586 16 H 0.084 0.916 17 C -0.137 4.137 18 N -0.523 5.523 19 Si 0.735 3.265 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.199 1.199 23 N -0.286 5.286 24 C 0.088 3.912 25 C 0.002 3.998 26 C -0.092 4.092 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.237 0.763 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.178 0.822 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.061 0.939 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.351 -14.051 -15.739 21.101 hybrid contribution -1.292 1.370 1.743 2.566 sum -0.942 -12.681 -13.996 18.910 Atomic orbital electron populations 1.22371 0.86973 1.02148 1.00885 1.61893 1.07804 1.13644 1.43164 1.22523 0.95483 0.89583 1.01596 1.21496 0.92355 0.94130 0.91744 1.57917 1.54970 1.22233 1.48934 1.01391 0.72708 0.73110 0.72855 1.93543 1.71365 1.58354 1.72066 1.93543 1.71382 1.48344 1.82151 1.31038 1.32589 1.06199 1.21426 1.20826 0.87312 0.91912 0.97109 1.21563 1.10046 1.01999 0.94425 1.18936 0.84999 0.88242 0.87239 1.45824 1.59867 1.12306 1.12209 1.19406 0.96316 0.73160 0.98531 1.21084 1.43601 0.94906 0.98963 0.91643 1.24920 0.95144 0.95746 0.97920 1.69915 1.46223 1.01851 1.34355 0.86388 0.79613 0.77505 0.82990 1.19884 1.20884 1.19925 1.67359 1.21074 1.11303 1.28859 1.21995 0.84921 0.98659 0.85615 1.21595 0.92321 0.82554 1.03281 1.22603 0.95476 0.98896 0.92194 0.91228 0.91291 0.95475 0.93888 0.89523 0.88777 0.90167 0.84237 0.83854 0.76289 0.95180 0.95090 0.92098 0.82194 0.90120 0.88755 0.93941 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.58 60.06 0.58 0.76 16 2 N -0.54 -4.67 4.88 -242.31 -1.18 -5.85 16 3 C 0.04 0.32 5.62 -3.70 -0.02 0.30 16 4 C 0.13 1.14 6.53 -3.60 -0.02 1.12 16 5 N -1.00 -10.23 3.32 -112.98 -0.38 -10.61 16 6 S 2.71 35.05 5.71 -107.50 -0.61 34.43 16 7 O -0.96 -14.51 16.13 -57.17 -0.92 -15.43 16 8 O -0.96 -14.13 16.07 -57.17 -0.92 -15.05 16 9 C -0.82 -11.80 5.99 -39.42 -0.24 -12.03 16 10 C 0.05 0.83 9.64 -39.32 -0.38 0.45 16 11 C -0.25 -4.48 9.33 -39.22 -0.37 -4.84 16 12 C 0.45 8.53 7.65 -155.02 -1.19 7.34 16 13 N -0.68 -13.92 5.72 -61.60 -0.35 -14.27 16 14 C 0.25 5.81 4.64 -5.19 -0.02 5.79 16 15 C -0.55 -14.01 9.28 -34.44 -0.32 -14.33 16 16 H 0.07 1.62 7.60 -52.49 -0.40 1.22 16 17 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -24.14 13.29 55.43 0.74 -23.40 16 19 Si 0.91 20.00 29.54 -169.99 -5.02 14.98 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 N -0.57 -10.13 10.39 -12.44 -0.13 -10.26 16 24 C 0.25 3.87 10.68 -17.57 -0.19 3.68 16 25 C 0.13 1.11 6.56 -3.36 -0.02 1.09 16 26 C 0.04 0.32 5.64 -3.47 -0.02 0.30 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.44 8.08 -51.93 -0.42 0.03 16 29 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.61 8.11 -51.93 -0.42 0.19 16 32 H 0.09 0.81 7.22 -51.93 -0.37 0.43 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.14 1.78 7.70 -52.49 -0.40 1.37 16 35 H 0.14 2.56 6.71 -52.49 -0.35 2.21 16 36 H 0.40 7.86 8.44 -40.82 -0.34 7.52 16 37 H 0.03 0.75 7.92 -51.93 -0.41 0.34 16 38 H 0.03 0.78 7.94 -51.93 -0.41 0.37 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.16 2.00 7.62 -52.49 -0.40 1.60 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.76 7.21 -51.93 -0.37 0.39 16 43 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 44 H 0.09 0.58 8.06 -51.93 -0.42 0.16 16 LS Contribution 372.72 15.07 5.62 5.62 Total: -1.00 -30.95 372.72 -11.87 -42.82 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.40 Total: 5.75 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -2.31 Total: -8.74 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: -1.30 Total: -64.39 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -1.84 Total: -30.48 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 35.05 SS G_CDS: -0.61 Total: 34.43 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.95 -11.87 -42.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912728251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.644 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds