Wall clock time and date at job start Sat Apr 11 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99896 * 2 1 4 4 C 1.53241 * 109.34184 * 187.25757 * 3 2 1 5 5 N 1.47077 * 108.51843 * 306.17010 * 4 3 2 6 6 S 1.65602 * 120.87884 * 231.18746 * 5 4 3 7 7 O 1.42095 * 106.40328 * 336.45895 * 6 5 4 8 8 O 1.42102 * 106.40133 * 203.53641 * 6 5 4 9 9 C 1.76194 * 107.21887 * 89.99870 * 6 5 4 10 10 C 1.38889 * 120.33739 * 270.02159 * 9 6 5 11 11 C 1.38299 * 118.50632 * 179.70720 * 10 9 6 12 12 C 1.39142 * 119.09605 * 0.51186 * 11 10 9 13 13 N 1.39004 * 119.70308 * 179.75098 * 12 11 10 14 14 C 1.46499 * 120.00058 * 359.73127 * 13 12 11 15 15 C 1.50701 * 109.46992 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47294 * 60.00559 * 19 17 15 21 21 H 1.48503 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47431 * 300.00157 * 19 17 15 23 23 N 1.32394 * 120.58848 * 359.47667 * 12 11 10 24 24 C 1.31976 * 121.62227 * 0.27767 * 23 12 11 25 25 C 1.47083 * 118.24015 * 51.45542 * 5 4 3 26 26 C 1.46897 * 111.00521 * 124.30158 * 2 1 3 27 27 H 1.08995 * 109.47377 * 59.99915 * 1 2 3 28 28 H 1.09004 * 109.47077 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46933 * 299.99916 * 1 2 3 30 30 H 1.08990 * 109.49660 * 67.29245 * 3 2 1 31 31 H 1.09003 * 109.51342 * 307.22416 * 3 2 1 32 32 H 1.08998 * 109.63074 * 186.45786 * 4 3 2 33 33 H 1.08998 * 109.62641 * 65.87441 * 4 3 2 34 34 H 1.07997 * 120.74471 * 359.97438 * 10 9 6 35 35 H 1.07994 * 120.44913 * 180.28437 * 11 10 9 36 36 H 0.97000 * 119.99521 * 179.72334 * 13 12 11 37 37 H 1.09002 * 109.47391 * 59.99649 * 14 13 12 38 38 H 1.09001 * 109.46813 * 299.99705 * 14 13 12 39 39 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 40 40 H 1.08002 * 119.56892 * 179.97438 * 24 23 12 41 41 H 1.08999 * 109.62814 * 68.25175 * 25 5 4 42 42 H 1.09000 * 109.62656 * 188.83343 * 25 5 4 43 43 H 1.09008 * 109.49062 * 292.70460 * 26 2 1 44 44 H 1.08998 * 109.49420 * 52.75516 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5163 1.3313 -0.1827 5 7 4.0869 0.4461 0.8440 6 16 5.3385 0.9528 1.8028 7 8 5.9981 1.9883 1.0876 8 8 5.9983 -0.2216 2.2552 9 6 4.6306 1.7065 3.2294 10 6 4.3482 3.0664 3.2373 11 6 3.7872 3.6174 4.3750 12 6 3.5361 2.7975 5.4708 13 7 2.9773 3.3392 6.6226 14 6 2.6610 4.7684 6.6810 15 6 2.0696 5.0974 8.0275 16 1 1.9424 4.3197 8.7660 17 6 1.6917 6.3914 8.3170 18 7 1.8470 7.3385 7.4179 19 14 0.9593 6.7992 9.9863 20 1 1.9384 6.4646 11.0516 21 1 0.6386 8.2479 10.0456 22 1 -0.2818 6.0093 10.1888 23 7 3.8195 1.5051 5.4242 24 6 4.3506 0.9514 4.3504 25 6 3.5204 -0.9031 0.9926 26 6 1.9955 -0.7728 1.1328 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.7555 1.8532 0.9478 31 1 1.5456 1.9341 -0.8181 32 1 3.9254 2.3352 -0.0691 33 1 3.7560 0.9451 -1.1733 34 1 4.5580 3.6788 2.3729 35 1 3.5507 4.6704 4.4136 36 1 2.7967 2.7708 7.3875 37 1 1.9423 5.0138 5.8991 38 1 3.5718 5.3485 6.5323 39 1 1.5809 8.2488 7.6215 40 1 4.5689 -0.1063 4.3487 41 1 3.7606 -1.4999 0.1127 42 1 3.9323 -1.3770 1.8835 43 1 1.7556 -0.2612 2.0650 44 1 1.5453 -1.7655 1.1365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912728251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:04 Heat of formation + Delta-G solvation = -46.378549 kcal Electronic energy + Delta-G solvation = -27748.613277 eV Core-core repulsion = 23827.019327 eV Total energy + Delta-G solvation = -3921.593950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.26097 -39.81439 -38.38408 -37.24746 -36.93945 -35.56076 -34.79474 -33.59357 -32.10582 -31.37980 -28.96455 -28.79442 -25.57101 -24.87056 -24.79882 -24.44273 -23.33656 -21.65325 -19.92670 -19.54505 -18.98919 -18.46499 -17.87776 -17.78994 -16.93315 -16.58897 -16.11762 -16.00863 -15.80250 -15.76145 -15.61147 -15.51960 -15.12421 -15.09018 -14.40985 -14.35562 -14.17103 -14.02450 -13.75050 -13.45957 -13.20603 -13.10225 -13.07997 -12.94481 -12.82195 -12.74678 -12.39765 -12.23269 -12.17533 -12.04202 -11.84616 -11.62538 -11.57881 -11.00877 -10.68275 -10.66067 -10.13573 -9.29288 -8.94757 -8.38248 -6.52611 -0.64197 -0.10963 0.24472 1.39598 1.41268 1.49662 1.92827 2.15177 2.39137 2.59045 2.79081 2.98082 2.98863 3.21574 3.49681 3.67639 3.77374 3.97981 4.04401 4.09437 4.24578 4.25404 4.36781 4.46733 4.65146 4.67122 4.67726 4.71747 4.72696 4.77846 4.81352 4.92996 4.97538 5.04333 5.07706 5.12246 5.14314 5.33104 5.53839 5.56432 5.73893 5.90795 6.05116 6.07265 6.51119 6.66420 6.99491 7.20737 8.72751 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.002803 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.459758 B = 9987.111296 C =10800.163949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.038 3.962 4 C 0.122 3.878 5 N -0.996 5.996 6 S 2.730 3.270 7 O -0.980 6.980 8 O -0.976 6.976 9 C -0.808 4.808 10 C 0.063 3.937 11 C -0.272 4.272 12 C 0.429 3.571 13 N -0.692 5.692 14 C 0.268 3.732 15 C -0.565 4.565 16 H 0.071 0.929 17 C 0.017 3.983 18 N -0.920 5.920 19 Si 0.976 3.024 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.266 1.266 23 N -0.577 5.577 24 C 0.246 3.754 25 C 0.122 3.878 26 C 0.038 3.962 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.014 0.986 30 H 0.025 0.975 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.165 0.835 35 H 0.133 0.867 36 H 0.404 0.596 37 H 0.010 0.990 38 H 0.008 0.992 39 H 0.272 0.728 40 H 0.190 0.810 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.025 0.975 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 -15.349 -17.032 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.092 4.092 4 C -0.003 4.003 5 N -0.836 5.836 6 S 2.821 3.179 7 O -0.970 6.970 8 O -0.966 6.966 9 C -0.901 4.901 10 C 0.037 3.963 11 C -0.299 4.299 12 C 0.191 3.809 13 N -0.316 5.316 14 C 0.146 3.854 15 C -0.603 4.603 16 H 0.089 0.911 17 C -0.185 4.185 18 N -0.558 5.558 19 Si 0.800 3.200 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.191 1.191 23 N -0.297 5.297 24 C 0.082 3.918 25 C -0.003 4.003 26 C -0.092 4.092 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.033 0.967 30 H 0.043 0.957 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.183 0.817 35 H 0.151 0.849 36 H 0.239 0.761 37 H 0.028 0.972 38 H 0.026 0.974 39 H 0.081 0.919 40 H 0.207 0.793 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.043 0.957 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.203 -15.657 -16.851 23.003 hybrid contribution -1.193 1.715 1.861 2.798 sum -0.989 -13.942 -14.990 20.495 Atomic orbital electron populations 1.22414 0.86305 1.02876 1.00740 1.61954 1.08444 1.13454 1.43008 1.22545 0.95450 0.89844 1.01345 1.21707 0.92427 0.94197 0.91925 1.57731 1.54626 1.23052 1.48193 1.00754 0.72728 0.72315 0.72153 1.93521 1.72250 1.59198 1.72073 1.93524 1.72125 1.48542 1.82446 1.31477 1.30512 1.05900 1.22212 1.21145 0.85704 0.92582 0.96892 1.21596 1.11413 1.01621 0.95242 1.19063 0.85702 0.89053 0.87121 1.45440 1.61972 1.10973 1.13189 1.18881 0.94463 0.74835 0.97211 1.21474 1.43580 0.95385 0.99822 0.91087 1.25826 0.95427 0.95600 1.01598 1.70030 1.47234 1.02239 1.36318 0.85331 0.78966 0.77316 0.78419 1.19262 1.20504 1.19122 1.67355 1.21520 1.10674 1.30106 1.22539 0.84140 1.00032 0.85066 1.21838 0.92374 0.81674 1.04424 1.22640 0.95470 0.99677 0.91391 0.90291 0.90170 0.96711 0.95683 0.87885 0.88511 0.88561 0.81739 0.84944 0.76097 0.97244 0.97444 0.91939 0.79292 0.88510 0.88092 0.95654 0.87712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.58 127.69 1.22 1.54 16 2 N -0.54 -8.23 4.88 -920.55 -4.49 -12.72 16 3 C 0.04 0.58 5.62 86.38 0.49 1.07 16 4 C 0.12 1.90 6.53 86.35 0.56 2.46 16 5 N -1.00 -18.03 3.32 -511.35 -1.70 -19.73 16 6 S 2.73 65.19 5.71 -56.49 -0.32 64.86 16 7 O -0.98 -27.58 16.13 -128.00 -2.07 -29.64 16 8 O -0.98 -26.37 16.07 -128.00 -2.06 -28.42 16 9 C -0.81 -22.34 5.99 22.37 0.13 -22.21 16 10 C 0.06 1.87 9.64 22.44 0.22 2.08 16 11 C -0.27 -9.89 9.33 22.50 0.21 -9.68 16 12 C 0.43 16.83 7.65 133.07 1.02 17.85 16 13 N -0.69 -29.46 5.72 -348.79 -2.00 -31.45 16 14 C 0.27 13.27 4.64 85.63 0.40 13.67 16 15 C -0.56 -29.61 9.28 25.60 0.24 -29.37 16 16 H 0.07 3.55 7.60 -2.91 -0.02 3.53 16 17 C 0.02 0.87 5.46 84.66 0.46 1.33 16 18 N -0.92 -51.28 13.29 21.45 0.28 -50.99 16 19 Si 0.98 41.10 29.54 68.60 2.03 43.12 16 20 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 21 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 23 N -0.58 -20.61 10.39 -193.26 -2.01 -22.62 16 24 C 0.25 7.23 10.68 84.62 0.90 8.13 16 25 C 0.12 1.79 6.56 86.50 0.57 2.36 16 26 C 0.04 0.55 5.64 86.54 0.49 1.04 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 28 H 0.08 0.86 8.08 -2.38 -0.02 0.84 16 29 H 0.01 0.22 8.14 -2.38 -0.02 0.20 16 30 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.10 1.24 8.11 -2.39 -0.02 1.22 16 32 H 0.10 1.46 7.22 -2.39 -0.02 1.44 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.23 16 34 H 0.17 3.98 7.70 -2.91 -0.02 3.96 16 35 H 0.13 5.04 6.71 -2.91 -0.02 5.02 16 36 H 0.40 16.37 8.44 -92.71 -0.78 15.59 16 37 H 0.01 0.51 7.92 -2.39 -0.02 0.49 16 38 H 0.01 0.41 7.94 -2.39 -0.02 0.39 16 39 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 40 H 0.19 4.32 7.62 -2.91 -0.02 4.30 16 41 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.10 1.36 7.21 -2.39 -0.02 1.34 16 43 H 0.03 0.46 8.14 -2.38 -0.02 0.44 16 44 H 0.10 1.14 8.06 -2.39 -0.02 1.12 16 Total: -1.00 -66.26 372.72 -5.19 -71.45 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.23 Total: 25.86 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 6.91 Total: -9.71 kcal Atomic # 7 Polarization: -127.61 SS G_CDS: -9.91 Total: -137.52 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -4.12 Total: -58.07 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 16 Polarization: 65.19 SS G_CDS: -0.32 Total: 64.86 kcal Total: -66.26 -5.19 -71.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912728251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.072 kcal (2) G-P(sol) polarization free energy of solvation -66.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds