Wall clock time and date at job start Sat Apr 11 2020 05:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47130 * 2 1 4 4 C 1.46505 * 119.99487 * 269.99874 * 3 2 1 5 5 C 1.50698 * 109.46902 * 269.99716 * 4 3 2 6 6 H 1.08001 * 119.99777 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99860 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00400 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99784 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47484 * 59.99928 * 9 7 5 11 11 H 1.48502 * 109.46753 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46960 * 299.99528 * 9 7 5 13 13 C 1.34776 * 120.00403 * 89.99130 * 3 2 1 14 14 O 1.21273 * 120.00201 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99840 * 0.02562 * 13 3 2 16 16 O 1.45193 * 109.47021 * 179.97438 * 15 13 3 17 17 C 1.34232 * 117.00295 * 179.97438 * 16 15 13 18 18 O 1.20827 * 119.99473 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00417 * 180.02562 * 17 16 15 20 20 H 1.09000 * 109.47020 * 300.00077 * 19 17 16 21 21 C 1.53002 * 109.47104 * 59.99728 * 19 17 16 22 22 N 1.46501 * 109.47335 * 179.97438 * 19 17 16 23 23 C 1.33878 * 122.76150 * 119.99812 * 22 19 17 24 24 O 1.21224 * 125.39650 * 359.97438 * 23 22 19 25 25 C 1.51313 * 109.20530 * 180.02562 * 23 22 19 26 26 C 1.54227 * 103.69342 * 359.92201 * 25 23 22 27 27 C 1.33871 * 122.75948 * 299.99895 * 22 19 17 28 28 O 1.21229 * 125.40167 * 0.02562 * 27 22 19 29 29 H 1.08997 * 109.47268 * 300.00505 * 1 2 3 30 30 H 1.09002 * 109.46989 * 60.00995 * 1 2 3 31 31 H 1.09004 * 109.46857 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47268 * 239.99495 * 2 1 3 33 33 H 1.09002 * 109.46989 * 119.99005 * 2 1 3 34 34 H 1.08994 * 109.47154 * 29.99522 * 4 3 2 35 35 H 1.09003 * 109.47039 * 149.99818 * 4 3 2 36 36 H 0.96998 * 120.00243 * 180.02562 * 8 7 5 37 37 H 1.09004 * 109.47120 * 59.99747 * 15 13 3 38 38 H 1.09000 * 109.46798 * 299.99638 * 15 13 3 39 39 H 1.08993 * 109.47489 * 300.00212 * 21 19 17 40 40 H 1.09000 * 109.46897 * 60.00274 * 21 19 17 41 41 H 1.09004 * 109.46952 * 179.97438 * 21 19 17 42 42 H 1.09002 * 110.60607 * 118.51938 * 25 23 22 43 43 H 1.09002 * 110.60509 * 241.32619 * 25 23 22 44 44 H 1.09007 * 110.60335 * 118.59605 * 26 25 23 45 45 H 1.09001 * 110.61059 * 241.55663 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3428 1.2309 -1.0956 7 6 4.1494 2.3903 -2.8775 8 7 3.3495 3.1263 -3.6177 9 14 5.9135 2.0961 -3.4170 10 1 6.1404 0.6395 -3.5952 11 1 6.1610 2.7962 -4.7030 12 1 6.8413 2.6186 -2.3819 13 6 2.2428 2.0167 1.1671 14 8 2.6475 3.1599 1.1671 15 6 1.9920 1.3062 2.4723 16 8 2.3069 2.1957 3.5758 17 6 2.1357 1.7122 4.8163 18 8 1.7365 0.5828 4.9746 19 6 2.4415 2.5778 6.0113 20 1 3.4902 2.8741 5.9866 21 6 1.5579 3.8264 5.9761 22 7 2.1748 1.8259 7.2400 23 6 3.1195 1.5739 8.1546 24 8 4.2776 1.9247 8.0829 25 6 2.5128 0.7806 9.2913 26 6 1.0370 0.6159 8.8747 27 6 0.9665 1.3342 7.5406 28 8 -0.0273 1.4455 6.8554 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.5818 1.6875 -2.0284 35 1 2.0955 3.1410 -1.1386 36 1 3.6755 3.5167 -4.4437 37 1 2.6226 0.4189 2.5300 38 1 0.9442 1.0117 2.5301 39 1 1.7558 4.3860 5.0620 40 1 0.5092 3.5301 6.0009 41 1 1.7787 4.4523 6.8408 42 1 2.9967 -0.1919 9.3816 43 1 2.5877 1.3334 10.2278 44 1 0.7868 -0.4386 8.7578 45 1 0.3778 1.0892 9.6025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919258841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:07 Heat of formation + Delta-G solvation = -172.869469 kcal Electronic energy + Delta-G solvation = -30181.087239 eV Core-core repulsion = 25778.962609 eV Total energy + Delta-G solvation = -4402.124630 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.50523 -40.51911 -39.03516 -38.86971 -36.60840 -36.18309 -35.33148 -34.82637 -32.85569 -30.99031 -30.19050 -29.12848 -26.66617 -26.60187 -25.21176 -23.11886 -22.96409 -22.70392 -21.74185 -19.68186 -18.72728 -18.12562 -17.75452 -17.22549 -17.01841 -16.62858 -16.36992 -16.32030 -15.81086 -15.38125 -15.03719 -14.67763 -14.58309 -14.35199 -14.30856 -14.10455 -13.71762 -13.48113 -13.42315 -13.04974 -12.95311 -12.70737 -12.46369 -12.26420 -12.09495 -12.06793 -11.84891 -11.64788 -11.24803 -10.97702 -10.92754 -10.91946 -10.89092 -10.64004 -10.54766 -10.36891 -10.17723 -10.16075 -9.69430 -9.03273 -8.45497 -7.77907 -6.06794 -4.11904 1.14609 1.69363 1.95570 2.22442 2.57927 3.21590 3.31422 3.35757 3.39635 3.59143 3.73564 3.79043 3.94716 4.33254 4.38940 4.44251 4.50438 4.59272 4.80926 4.82973 4.95004 5.09053 5.09259 5.12652 5.17354 5.27716 5.28176 5.33931 5.46569 5.57037 5.71693 5.78578 5.97940 6.17423 6.20785 6.36330 6.43588 6.90695 6.97152 7.31538 7.37676 7.44255 7.53699 7.88882 8.18874 8.26793 8.81862 8.96808 9.53156 11.01341 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018247 B = 0.002500 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.164546 B =11198.147025 C =11896.251580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.508 3.492 14 O -0.518 6.518 15 C 0.051 3.949 16 O -0.321 6.321 17 C 0.458 3.542 18 O -0.497 6.497 19 C 0.139 3.861 20 H 0.145 0.855 21 C -0.163 4.163 22 N -0.564 5.564 23 C 0.529 3.471 24 O -0.479 6.479 25 C -0.153 4.153 26 C -0.153 4.153 27 C 0.530 3.470 28 O -0.464 6.464 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.631 -6.543 26.430 28.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.130 3.870 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.292 3.708 14 O -0.394 6.394 15 C -0.027 4.027 16 O -0.235 6.235 17 C 0.298 3.702 18 O -0.384 6.384 19 C 0.036 3.964 20 H 0.163 0.837 21 C -0.220 4.220 22 N -0.309 5.309 23 C 0.319 3.681 24 O -0.350 6.350 25 C -0.193 4.193 26 C -0.193 4.193 27 C 0.319 3.681 28 O -0.334 6.334 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.462 -5.894 25.785 27.228 hybrid contribution 0.963 -0.495 -0.566 1.222 sum -5.499 -6.388 25.219 26.590 Atomic orbital electron populations 1.22234 0.96471 1.01728 1.02453 1.21514 0.93804 0.83928 1.03011 1.48213 1.63766 1.13409 1.07107 1.19336 0.96484 0.93715 0.77494 1.21383 0.96827 1.32214 1.06417 0.92457 1.24927 0.97921 0.94825 0.96328 1.69917 1.35767 1.33253 1.14351 0.86544 0.84695 0.78260 0.77849 1.20245 1.21138 1.20120 1.19653 0.79781 0.87154 0.84215 1.90716 1.44473 1.17460 1.86701 1.23033 1.02882 0.92564 0.84190 1.86518 1.78253 1.44886 1.13813 1.23488 0.74780 0.86829 0.85090 1.90671 1.41516 1.19688 1.86536 1.20764 1.05281 0.90813 0.79575 0.83716 1.22152 1.00383 0.94336 1.05167 1.46667 1.13142 1.51002 1.20109 1.20911 0.84884 0.78417 0.83921 1.90814 1.15752 1.50852 1.77601 1.22461 0.95269 1.03193 0.98384 1.22523 0.97594 1.04239 0.94906 1.20886 0.81722 0.77444 0.88083 1.90785 1.32927 1.54967 1.54700 0.93127 0.91729 0.91878 0.89354 0.91834 0.94588 0.93674 0.92589 0.88626 0.88546 0.88361 0.90223 0.90389 0.85885 0.85894 0.85947 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 37.16 0.38 -1.93 16 2 C 0.10 1.62 5.93 -4.04 -0.02 1.60 16 3 N -0.59 -12.50 2.46 -175.06 -0.43 -12.93 16 4 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 5 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 9 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.51 10.84 7.75 -10.98 -0.09 10.75 16 14 O -0.52 -13.34 16.08 -14.10 -0.23 -13.57 16 15 C 0.05 0.85 4.50 36.01 0.16 1.01 16 16 O -0.32 -5.42 9.66 -45.91 -0.44 -5.86 16 17 C 0.46 6.79 6.89 36.00 0.25 7.04 16 18 O -0.50 -8.06 14.55 -24.50 -0.36 -8.42 16 19 C 0.14 1.60 3.22 -69.08 -0.22 1.38 16 20 H 0.15 1.55 7.41 -51.93 -0.38 1.16 16 21 C -0.16 -1.61 9.10 37.16 0.34 -1.27 16 22 N -0.56 -5.58 2.28 -109.34 -0.25 -5.83 16 23 C 0.53 4.56 8.08 -11.09 -0.09 4.47 16 24 O -0.48 -5.70 17.23 5.61 0.10 -5.61 16 25 C -0.15 -0.54 7.02 -26.94 -0.19 -0.73 16 26 C -0.15 -0.61 7.05 -26.76 -0.19 -0.80 16 27 C 0.53 5.05 6.71 -10.91 -0.07 4.97 16 28 O -0.46 -6.14 15.12 -10.65 -0.16 -6.30 16 29 H 0.05 0.67 7.22 -51.93 -0.38 0.29 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.44 8.07 -51.93 -0.42 1.03 16 33 H 0.06 0.86 6.44 -51.93 -0.33 0.53 16 34 H 0.04 0.93 8.07 -51.93 -0.42 0.52 16 35 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.10 1.45 7.39 -51.93 -0.38 1.07 16 38 H 0.10 1.44 7.18 -51.93 -0.37 1.07 16 39 H 0.10 1.01 8.11 -51.93 -0.42 0.59 16 40 H 0.08 0.88 6.64 -51.93 -0.34 0.53 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.12 0.14 8.14 -51.93 -0.42 -0.28 16 44 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.12 0.20 8.14 -51.93 -0.42 -0.23 16 LS Contribution 385.10 15.07 5.80 5.80 Total: -1.00 -38.20 385.10 -6.79 -44.99 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -6.35 Total: -2.70 kcal Atomic # 6 Polarization: 19.48 SS G_CDS: -0.19 Total: 19.29 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.06 Total: -44.48 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -1.09 Total: -39.76 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.20 -6.79 -44.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919258841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.879 kcal (2) G-P(sol) polarization free energy of solvation -38.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds