Wall clock time and date at job start Sat Apr 11 2020 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47130 * 2 1 4 4 C 1.46505 * 119.99487 * 269.99874 * 3 2 1 5 5 C 1.50698 * 109.46902 * 269.99716 * 4 3 2 6 6 H 1.08001 * 119.99777 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99860 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00400 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99784 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47484 * 59.99928 * 9 7 5 11 11 H 1.48502 * 109.46753 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46960 * 299.99528 * 9 7 5 13 13 C 1.34776 * 120.00403 * 89.99130 * 3 2 1 14 14 O 1.21273 * 120.00201 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99840 * 0.02562 * 13 3 2 16 16 O 1.45193 * 109.47021 * 179.97438 * 15 13 3 17 17 C 1.34232 * 117.00295 * 179.97438 * 16 15 13 18 18 O 1.20827 * 119.99473 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00417 * 180.02562 * 17 16 15 20 20 H 1.09000 * 109.47020 * 300.00077 * 19 17 16 21 21 C 1.53002 * 109.47104 * 59.99728 * 19 17 16 22 22 N 1.46501 * 109.47335 * 179.97438 * 19 17 16 23 23 C 1.33878 * 122.76150 * 119.99812 * 22 19 17 24 24 O 1.21224 * 125.39650 * 359.97438 * 23 22 19 25 25 C 1.51313 * 109.20530 * 180.02562 * 23 22 19 26 26 C 1.54227 * 103.69342 * 359.92201 * 25 23 22 27 27 C 1.33871 * 122.75948 * 299.99895 * 22 19 17 28 28 O 1.21229 * 125.40167 * 0.02562 * 27 22 19 29 29 H 1.08997 * 109.47268 * 300.00505 * 1 2 3 30 30 H 1.09002 * 109.46989 * 60.00995 * 1 2 3 31 31 H 1.09004 * 109.46857 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47268 * 239.99495 * 2 1 3 33 33 H 1.09002 * 109.46989 * 119.99005 * 2 1 3 34 34 H 1.08994 * 109.47154 * 29.99522 * 4 3 2 35 35 H 1.09003 * 109.47039 * 149.99818 * 4 3 2 36 36 H 0.96998 * 120.00243 * 180.02562 * 8 7 5 37 37 H 1.09004 * 109.47120 * 59.99747 * 15 13 3 38 38 H 1.09000 * 109.46798 * 299.99638 * 15 13 3 39 39 H 1.08993 * 109.47489 * 300.00212 * 21 19 17 40 40 H 1.09000 * 109.46897 * 60.00274 * 21 19 17 41 41 H 1.09004 * 109.46952 * 179.97438 * 21 19 17 42 42 H 1.09002 * 110.60607 * 118.51938 * 25 23 22 43 43 H 1.09002 * 110.60509 * 241.32619 * 25 23 22 44 44 H 1.09007 * 110.60335 * 118.59605 * 26 25 23 45 45 H 1.09001 * 110.61059 * 241.55663 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3428 1.2309 -1.0956 7 6 4.1494 2.3903 -2.8775 8 7 3.3495 3.1263 -3.6177 9 14 5.9135 2.0961 -3.4170 10 1 6.1404 0.6395 -3.5952 11 1 6.1610 2.7962 -4.7030 12 1 6.8413 2.6186 -2.3819 13 6 2.2428 2.0167 1.1671 14 8 2.6475 3.1599 1.1671 15 6 1.9920 1.3062 2.4723 16 8 2.3069 2.1957 3.5758 17 6 2.1357 1.7122 4.8163 18 8 1.7365 0.5828 4.9746 19 6 2.4415 2.5778 6.0113 20 1 3.4902 2.8741 5.9866 21 6 1.5579 3.8264 5.9761 22 7 2.1748 1.8259 7.2400 23 6 3.1195 1.5739 8.1546 24 8 4.2776 1.9247 8.0829 25 6 2.5128 0.7806 9.2913 26 6 1.0370 0.6159 8.8747 27 6 0.9665 1.3342 7.5406 28 8 -0.0273 1.4455 6.8554 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.5818 1.6875 -2.0284 35 1 2.0955 3.1410 -1.1386 36 1 3.6755 3.5167 -4.4437 37 1 2.6226 0.4189 2.5300 38 1 0.9442 1.0117 2.5301 39 1 1.7558 4.3860 5.0620 40 1 0.5092 3.5301 6.0009 41 1 1.7787 4.4523 6.8408 42 1 2.9967 -0.1919 9.3816 43 1 2.5877 1.3334 10.2278 44 1 0.7868 -0.4386 8.7578 45 1 0.3778 1.0892 9.6025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919258841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:06 Heat of formation + Delta-G solvation = -198.074074 kcal Electronic energy + Delta-G solvation = -30182.180193 eV Core-core repulsion = 25778.962609 eV Total energy + Delta-G solvation = -4403.217584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.24294 -41.74468 -40.60828 -39.68945 -37.85668 -37.06618 -36.99238 -35.51205 -34.96101 -31.87587 -31.60264 -30.59490 -28.49460 -27.11144 -26.23032 -24.91066 -24.23525 -23.48977 -22.80116 -20.63536 -20.20456 -19.20717 -18.74354 -18.63343 -18.16403 -17.95913 -17.67675 -17.51218 -17.23483 -16.69629 -16.33369 -16.01532 -15.70711 -15.31571 -15.08578 -14.91065 -14.86499 -14.71850 -14.52458 -14.19968 -14.03950 -13.93304 -13.66235 -13.52926 -13.38420 -13.31732 -13.11860 -13.05791 -12.69027 -12.55347 -12.27985 -12.12417 -12.08729 -11.97060 -11.88288 -11.76839 -11.62306 -11.08710 -11.08338 -10.79320 -10.66218 -9.59586 -8.25166 -6.39884 0.49437 0.74217 0.80130 1.35641 1.40010 1.45111 1.47522 1.55028 1.72417 2.25098 2.39928 3.04818 3.11812 3.23940 3.30908 3.35802 3.60173 3.62834 3.73434 3.79274 3.86766 4.01827 4.08618 4.20452 4.32942 4.49889 4.53612 4.61650 4.77846 4.81729 4.89793 4.91845 4.94183 4.95388 4.98710 5.03070 5.16890 5.31485 5.50407 5.70934 5.75946 6.01430 6.26248 6.27918 6.55331 6.67679 6.68478 7.15690 7.33048 8.82235 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018247 B = 0.002500 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.164546 B =11198.147025 C =11896.251580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.547 4.547 6 H 0.054 0.946 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.277 1.277 12 H -0.278 1.278 13 C 0.501 3.499 14 O -0.574 6.574 15 C 0.063 3.937 16 O -0.340 6.340 17 C 0.456 3.544 18 O -0.511 6.511 19 C 0.135 3.865 20 H 0.149 0.851 21 C -0.154 4.154 22 N -0.570 5.570 23 C 0.523 3.477 24 O -0.519 6.519 25 C -0.137 4.137 26 C -0.137 4.137 27 C 0.518 3.482 28 O -0.510 6.510 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.031 0.969 35 H 0.000 1.000 36 H 0.268 0.732 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.145 0.855 43 H 0.157 0.843 44 H 0.140 0.860 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.448 -8.874 29.151 31.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.326 5.326 4 C 0.142 3.858 5 C -0.585 4.585 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.791 3.209 10 H -0.184 1.184 11 H -0.202 1.202 12 H -0.204 1.204 13 C 0.288 3.712 14 O -0.454 6.454 15 C -0.014 4.014 16 O -0.254 6.254 17 C 0.298 3.702 18 O -0.399 6.399 19 C 0.031 3.969 20 H 0.166 0.834 21 C -0.211 4.211 22 N -0.314 5.314 23 C 0.315 3.685 24 O -0.393 6.393 25 C -0.175 4.175 26 C -0.176 4.176 27 C 0.310 3.690 28 O -0.383 6.383 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.049 0.951 35 H 0.018 0.982 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.163 0.837 43 H 0.174 0.826 44 H 0.158 0.842 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.307 -8.290 28.541 30.383 hybrid contribution 0.865 0.231 -1.394 1.657 sum -5.442 -8.059 27.147 28.837 Atomic orbital electron populations 1.22175 0.94327 1.03819 1.01801 1.21867 0.95553 0.80987 1.04391 1.48209 1.63509 1.15248 1.05667 1.18808 0.95663 0.91683 0.79613 1.21662 0.97769 1.32393 1.06724 0.92777 1.25842 1.02409 0.94367 0.96352 1.70035 1.37820 1.33962 1.14788 0.85473 0.78948 0.79054 0.77377 1.18431 1.20244 1.20394 1.20424 0.78466 0.86661 0.85690 1.90679 1.47023 1.20019 1.87686 1.22864 1.04592 0.92030 0.81900 1.86527 1.78687 1.45517 1.14687 1.24153 0.74026 0.87092 0.84903 1.90642 1.42270 1.20394 1.86569 1.20838 1.05698 0.91019 0.79369 0.83399 1.22085 0.99284 0.93912 1.05833 1.46982 1.14102 1.50901 1.19461 1.21900 0.84161 0.77828 0.84570 1.90796 1.17419 1.52562 1.78530 1.22616 0.94178 1.03590 0.97143 1.22670 0.98540 1.04596 0.91817 1.21969 0.80656 0.76799 0.89572 1.90760 1.34246 1.56723 1.56560 0.92714 0.93483 0.88331 0.89757 0.88639 0.95121 0.98164 0.92291 0.86474 0.86315 0.89316 0.91392 0.87939 0.83709 0.82569 0.84216 0.82847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.17 10.24 71.98 0.74 -3.44 16 2 C 0.09 2.91 5.93 86.38 0.51 3.42 16 3 N -0.59 -25.67 2.46 -826.15 -2.03 -27.70 16 4 C 0.26 14.28 5.16 85.63 0.44 14.72 16 5 C -0.55 -31.72 9.39 25.60 0.24 -31.48 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 7 C 0.01 0.56 5.46 84.65 0.46 1.02 16 8 N -0.93 -56.21 13.29 21.45 0.28 -55.92 16 9 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 10 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 C 0.50 21.98 7.75 87.66 0.68 22.66 16 14 O -0.57 -31.20 16.08 15.79 0.25 -30.95 16 15 C 0.06 2.08 4.50 71.24 0.32 2.40 16 16 O -0.34 -11.68 9.66 -45.08 -0.44 -12.11 16 17 C 0.46 13.58 6.89 71.23 0.49 14.07 16 18 O -0.51 -16.23 14.55 27.46 0.40 -15.83 16 19 C 0.14 3.11 3.22 44.24 0.14 3.25 16 20 H 0.15 3.25 7.41 -2.39 -0.02 3.23 16 21 C -0.15 -3.07 9.10 71.98 0.66 -2.42 16 22 N -0.57 -10.61 2.28 -737.68 -1.68 -12.29 16 23 C 0.52 8.01 8.08 87.99 0.71 8.72 16 24 O -0.52 -11.91 17.23 -2.86 -0.05 -11.96 16 25 C -0.14 -0.39 7.02 30.46 0.21 -0.18 16 26 C -0.14 -0.55 7.05 30.58 0.22 -0.33 16 27 C 0.52 9.00 6.71 88.11 0.59 9.59 16 28 O -0.51 -13.20 15.12 12.67 0.19 -13.01 16 29 H 0.05 1.36 7.22 -2.39 -0.02 1.34 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.08 2.69 8.07 -2.39 -0.02 2.67 16 33 H 0.10 2.36 6.44 -2.39 -0.02 2.34 16 34 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 35 H 0.00 0.01 7.42 -2.39 -0.02 0.00 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.12 3.37 7.39 -2.39 -0.02 3.35 16 38 H 0.12 3.39 7.18 -2.39 -0.02 3.38 16 39 H 0.09 1.93 8.11 -2.39 -0.02 1.91 16 40 H 0.07 1.53 6.64 -2.39 -0.02 1.52 16 41 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.15 -0.08 8.14 -2.39 -0.02 -0.10 16 43 H 0.16 -0.48 8.14 -2.39 -0.02 -0.50 16 44 H 0.14 0.19 8.14 -2.38 -0.02 0.17 16 45 H 0.15 -0.28 8.14 -2.39 -0.02 -0.29 16 Total: -1.00 -88.84 385.10 6.39 -82.45 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 1.01 Total: 8.11 kcal Atomic # 6 Polarization: 35.60 SS G_CDS: 6.41 Total: 42.02 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -3.42 Total: -95.91 kcal Atomic # 8 Polarization: -84.22 SS G_CDS: 0.36 Total: -83.86 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -88.84 6.39 -82.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919258841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.626 kcal (2) G-P(sol) polarization free energy of solvation -88.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds