Wall clock time and date at job start Sat Apr 11 2020 05:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47352 * 2 1 4 4 O 1.45204 * 109.47444 * 120.00117 * 2 1 3 5 5 C 1.34229 * 116.99857 * 270.00329 * 4 2 1 6 6 O 1.20830 * 120.00006 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99860 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.47124 * 299.99549 * 7 5 4 9 9 C 1.52997 * 109.47270 * 60.00108 * 7 5 4 10 10 N 1.46507 * 109.47060 * 179.97438 * 7 5 4 11 11 C 1.33875 * 122.76459 * 299.71070 * 10 7 5 12 12 O 1.21228 * 125.39404 * 359.97438 * 11 10 7 13 13 C 1.51316 * 109.20769 * 179.84104 * 11 10 7 14 14 C 1.54226 * 103.55193 * 0.38779 * 13 11 10 15 15 C 1.33878 * 122.76017 * 120.00263 * 10 7 5 16 16 O 1.21225 * 125.39746 * 0.02562 * 15 10 7 17 17 C 1.50698 * 109.47587 * 240.00073 * 2 1 3 18 18 O 1.21280 * 120.00203 * 256.03360 * 17 2 1 19 19 N 1.34779 * 120.00030 * 76.02141 * 17 2 1 20 20 C 1.46499 * 119.99988 * 5.37097 * 19 17 2 21 21 C 1.46498 * 120.00081 * 185.37169 * 19 17 2 22 22 C 1.50702 * 109.47304 * 90.00354 * 21 19 17 23 23 H 1.08001 * 119.99689 * 359.97438 * 22 21 19 24 24 C 1.37874 * 119.99989 * 180.02562 * 22 21 19 25 25 N 1.31519 * 120.00227 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99902 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46942 * 90.00289 * 26 24 22 28 28 H 1.48503 * 109.47034 * 209.99409 * 26 24 22 29 29 H 1.48495 * 109.47380 * 330.00313 * 26 24 22 30 30 H 1.09000 * 109.46932 * 66.13647 * 1 2 3 31 31 H 1.08999 * 109.47044 * 306.13700 * 1 2 3 32 32 H 1.08993 * 109.47250 * 186.13628 * 1 2 3 33 33 H 1.09001 * 109.47503 * 59.99673 * 9 7 5 34 34 H 1.09001 * 109.47142 * 180.02562 * 9 7 5 35 35 H 1.09000 * 109.46841 * 299.99679 * 9 7 5 36 36 H 1.08999 * 110.79435 * 241.77526 * 13 11 10 37 37 H 1.08997 * 110.41168 * 118.81195 * 13 11 10 38 38 H 1.09008 * 110.60331 * 241.25652 * 14 13 11 39 39 H 1.09002 * 110.74095 * 118.35968 * 14 13 11 40 40 H 1.09006 * 109.47084 * 84.81792 * 20 19 17 41 41 H 1.08994 * 109.47590 * 204.81862 * 20 19 17 42 42 H 1.09006 * 109.47202 * 324.82157 * 20 19 17 43 43 H 1.09001 * 109.47134 * 210.00388 * 21 19 17 44 44 H 1.09001 * 109.47100 * 330.00088 * 21 19 17 45 45 H 0.96998 * 120.00236 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 0.0640 2.2811 6 8 1.9981 1.2519 2.2504 7 6 2.7183 -0.5772 3.5494 8 1 2.0088 -1.3369 3.8774 9 6 4.0783 -1.2279 3.2891 10 7 2.8574 0.4438 4.5909 11 6 3.6701 1.5002 4.4658 12 8 4.3711 1.7370 3.5056 13 6 3.5724 2.3537 5.7115 14 6 2.5591 1.5939 6.5916 15 6 2.1865 0.3940 5.7484 16 8 1.4048 -0.4748 6.0701 17 6 2.0324 -0.7104 -1.2304 18 8 2.4736 -1.8367 -1.1428 19 7 1.9913 -0.0941 -2.4284 20 6 1.5690 1.3058 -2.5178 21 6 2.3688 -0.8242 -3.6410 22 6 1.1505 -1.4918 -4.2253 23 1 0.1911 -1.3834 -3.7414 24 6 1.2610 -2.2417 -5.3770 25 7 2.4295 -2.3742 -5.9659 26 14 -0.2489 -3.0698 -6.1008 27 1 -0.9068 -2.1474 -7.0609 28 1 0.1580 -4.3112 -6.8068 29 1 -1.1982 -3.4087 -5.0103 30 1 -0.3633 0.4158 -0.9398 31 1 -0.3633 0.6060 0.8299 32 1 -0.3633 -1.0217 0.1098 33 1 4.7878 -0.4682 2.9611 34 1 4.4405 -1.6921 4.2063 35 1 3.9752 -1.9875 2.5141 36 1 3.2003 3.3494 5.4703 37 1 4.5411 2.4148 6.2074 38 1 1.6828 2.2117 6.7883 39 1 3.0212 1.2770 7.5266 40 1 2.4229 1.9558 -2.3267 41 1 1.1775 1.5043 -3.5155 42 1 0.7924 1.4992 -1.7776 43 1 2.7861 -0.1284 -4.3690 44 1 3.1136 -1.5804 -3.3928 45 1 2.5072 -2.9015 -6.7763 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919261536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:09 Heat of formation + Delta-G solvation = -169.279837 kcal Electronic energy + Delta-G solvation = -30565.966287 eV Core-core repulsion = 26163.997315 eV Total energy + Delta-G solvation = -4401.968972 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.50966 -40.64013 -39.03418 -38.84746 -36.61938 -36.17418 -34.90909 -34.83054 -32.84891 -31.74583 -30.65120 -27.80699 -26.61412 -26.12587 -25.60049 -24.32115 -23.01359 -22.70300 -21.41580 -19.66130 -18.86859 -18.16885 -17.71196 -17.22572 -16.95324 -16.58254 -16.40651 -16.03633 -15.75514 -15.28618 -14.95862 -14.66424 -14.57681 -14.39005 -14.31007 -14.20633 -13.74328 -13.45348 -13.26912 -12.97493 -12.80223 -12.63125 -12.39003 -12.26501 -12.12142 -12.09014 -11.84402 -11.75681 -11.46391 -11.24887 -10.95144 -10.92075 -10.88378 -10.76072 -10.58445 -10.35885 -10.19576 -10.14708 -9.67725 -8.94332 -8.46925 -7.74042 -6.07748 -4.13239 1.14969 1.70832 1.97548 2.23322 2.60172 3.20967 3.28278 3.35316 3.39816 3.60040 3.74658 3.81727 3.95350 4.33663 4.39067 4.42962 4.49976 4.58445 4.77142 4.84786 4.95227 5.00399 5.07948 5.09401 5.13433 5.26770 5.29801 5.48440 5.51202 5.63567 5.68418 5.83856 5.85607 6.05327 6.21392 6.29812 6.37311 6.91092 6.96621 7.32995 7.38355 7.44496 7.56029 7.88038 8.17663 8.26844 8.81297 8.96461 9.51928 11.00371 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024760 B = 0.002455 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.605367 B =11404.631675 C =11582.619344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.071 3.929 3 H 0.103 0.897 4 O -0.318 6.318 5 C 0.457 3.543 6 O -0.497 6.497 7 C 0.139 3.861 8 H 0.144 0.856 9 C -0.164 4.164 10 N -0.564 5.564 11 C 0.529 3.471 12 O -0.462 6.462 13 C -0.154 4.154 14 C -0.153 4.153 15 C 0.530 3.470 16 O -0.481 6.481 17 C 0.511 3.489 18 O -0.520 6.520 19 N -0.596 5.596 20 C 0.073 3.927 21 C 0.245 3.755 22 C -0.530 4.530 23 H 0.058 0.942 24 C 0.062 3.938 25 N -0.893 5.893 26 Si 0.899 3.101 27 H -0.280 1.280 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.048 0.952 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.036 0.964 44 H 0.047 0.953 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 11.269 25.811 28.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.013 3.987 3 H 0.121 0.879 4 O -0.233 6.233 5 C 0.298 3.702 6 O -0.384 6.384 7 C 0.036 3.964 8 H 0.162 0.838 9 C -0.221 4.221 10 N -0.309 5.309 11 C 0.318 3.682 12 O -0.332 6.332 13 C -0.194 4.194 14 C -0.193 4.193 15 C 0.319 3.681 16 O -0.352 6.352 17 C 0.295 3.705 18 O -0.395 6.395 19 N -0.329 5.329 20 C -0.071 4.071 21 C 0.127 3.873 22 C -0.568 4.568 23 H 0.076 0.924 24 C -0.141 4.141 25 N -0.532 5.532 26 Si 0.727 3.273 27 H -0.206 1.206 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.066 0.934 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.208 10.576 25.234 27.387 hybrid contribution -1.011 -0.244 -0.675 1.240 sum 0.198 10.331 24.559 26.644 Atomic orbital electron populations 1.22165 0.91970 1.04228 1.03835 1.22736 0.96083 0.97471 0.82422 0.87884 1.86590 1.76259 1.41066 1.19336 1.23493 0.74681 0.86100 0.85913 1.90653 1.47511 1.16163 1.84036 1.20768 1.02301 0.89797 0.83555 0.83841 1.22160 0.93300 1.02334 1.04340 1.46675 1.41460 1.24996 1.17790 1.20801 0.77824 0.80516 0.89040 1.90801 1.37789 1.70878 1.33686 1.22459 1.02624 1.00781 0.93489 1.22460 1.02018 0.95052 0.99731 1.20908 0.78462 0.87379 0.81339 1.90804 1.32113 1.38629 1.73696 1.19699 0.80232 0.86814 0.83722 1.90694 1.45161 1.18354 1.85305 1.48072 1.65247 1.11912 1.07681 1.21838 0.99013 0.82667 1.03536 1.19380 0.96720 0.92089 0.79130 1.21419 0.94759 1.31477 1.09193 0.92365 1.24940 0.96271 0.96114 0.96741 1.69932 1.23173 1.40457 1.19637 0.86479 0.82748 0.79008 0.79087 1.20607 1.21033 1.19857 0.89309 0.91381 0.90496 0.90154 0.90426 0.88316 0.85893 0.86038 0.85901 0.85890 0.93376 0.90005 0.92321 0.94590 0.93526 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.19 37.15 0.34 -2.08 16 2 C 0.07 1.23 2.14 -27.89 -0.06 1.17 16 3 H 0.10 1.68 6.31 -51.93 -0.33 1.35 16 4 O -0.32 -5.43 9.37 -45.75 -0.43 -5.86 16 5 C 0.46 6.85 6.87 36.00 0.25 7.10 16 6 O -0.50 -8.09 14.05 -24.40 -0.34 -8.43 16 7 C 0.14 1.61 3.22 -69.08 -0.22 1.39 16 8 H 0.14 1.49 7.41 -51.93 -0.38 1.10 16 9 C -0.16 -1.71 9.10 37.16 0.34 -1.37 16 10 N -0.56 -5.61 2.27 -109.48 -0.25 -5.86 16 11 C 0.53 5.18 6.70 -11.09 -0.07 5.11 16 12 O -0.46 -6.36 15.13 -10.24 -0.15 -6.52 16 13 C -0.15 -0.64 7.03 -26.94 -0.19 -0.83 16 14 C -0.15 -0.54 7.03 -26.94 -0.19 -0.72 16 15 C 0.53 4.49 8.08 -11.09 -0.09 4.40 16 16 O -0.48 -5.56 17.23 5.61 0.10 -5.47 16 17 C 0.51 11.15 6.95 -10.99 -0.08 11.08 16 18 O -0.52 -13.52 16.13 -13.54 -0.22 -13.73 16 19 N -0.60 -12.88 2.86 -182.95 -0.52 -13.40 16 20 C 0.07 1.19 9.79 59.85 0.59 1.77 16 21 C 0.25 6.44 5.18 -5.19 -0.03 6.42 16 22 C -0.53 -14.90 9.39 -34.44 -0.32 -15.23 16 23 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 24 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 25 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 26 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 30 H 0.09 1.24 6.33 -51.93 -0.33 0.91 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.08 0.96 6.62 -51.93 -0.34 0.62 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 1.09 8.11 -51.93 -0.42 0.67 16 36 H 0.12 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.12 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.12 0.25 8.14 -51.92 -0.42 -0.18 16 39 H 0.12 0.14 8.14 -51.93 -0.42 -0.28 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.32 8.03 -51.93 -0.42 0.90 16 42 H 0.06 0.80 4.92 -51.93 -0.26 0.54 16 43 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 44 H 0.05 1.38 7.36 -51.93 -0.38 1.00 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 381.73 15.07 5.75 5.75 Total: -1.00 -38.22 381.73 -6.39 -44.62 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -6.21 Total: -1.93 kcal Atomic # 6 Polarization: 19.70 SS G_CDS: 0.16 Total: 19.86 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -0.04 Total: -45.00 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -1.05 Total: -40.01 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.22 -6.39 -44.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919261536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.663 kcal (2) G-P(sol) polarization free energy of solvation -38.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds