Wall clock time and date at job start Sat Apr 11 2020 05:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47352 * 2 1 4 4 O 1.45204 * 109.47444 * 120.00117 * 2 1 3 5 5 C 1.34229 * 116.99857 * 270.00329 * 4 2 1 6 6 O 1.20830 * 120.00006 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99860 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.47124 * 299.99549 * 7 5 4 9 9 C 1.52997 * 109.47270 * 60.00108 * 7 5 4 10 10 N 1.46507 * 109.47060 * 179.97438 * 7 5 4 11 11 C 1.33875 * 122.76459 * 299.71070 * 10 7 5 12 12 O 1.21228 * 125.39404 * 359.97438 * 11 10 7 13 13 C 1.51316 * 109.20769 * 179.84104 * 11 10 7 14 14 C 1.54226 * 103.55193 * 0.38779 * 13 11 10 15 15 C 1.33878 * 122.76017 * 120.00263 * 10 7 5 16 16 O 1.21225 * 125.39746 * 0.02562 * 15 10 7 17 17 C 1.50698 * 109.47587 * 240.00073 * 2 1 3 18 18 O 1.21280 * 120.00203 * 256.03360 * 17 2 1 19 19 N 1.34779 * 120.00030 * 76.02141 * 17 2 1 20 20 C 1.46499 * 119.99988 * 5.37097 * 19 17 2 21 21 C 1.46498 * 120.00081 * 185.37169 * 19 17 2 22 22 C 1.50702 * 109.47304 * 90.00354 * 21 19 17 23 23 H 1.08001 * 119.99689 * 359.97438 * 22 21 19 24 24 C 1.37874 * 119.99989 * 180.02562 * 22 21 19 25 25 N 1.31519 * 120.00227 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99902 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46942 * 90.00289 * 26 24 22 28 28 H 1.48503 * 109.47034 * 209.99409 * 26 24 22 29 29 H 1.48495 * 109.47380 * 330.00313 * 26 24 22 30 30 H 1.09000 * 109.46932 * 66.13647 * 1 2 3 31 31 H 1.08999 * 109.47044 * 306.13700 * 1 2 3 32 32 H 1.08993 * 109.47250 * 186.13628 * 1 2 3 33 33 H 1.09001 * 109.47503 * 59.99673 * 9 7 5 34 34 H 1.09001 * 109.47142 * 180.02562 * 9 7 5 35 35 H 1.09000 * 109.46841 * 299.99679 * 9 7 5 36 36 H 1.08999 * 110.79435 * 241.77526 * 13 11 10 37 37 H 1.08997 * 110.41168 * 118.81195 * 13 11 10 38 38 H 1.09008 * 110.60331 * 241.25652 * 14 13 11 39 39 H 1.09002 * 110.74095 * 118.35968 * 14 13 11 40 40 H 1.09006 * 109.47084 * 84.81792 * 20 19 17 41 41 H 1.08994 * 109.47590 * 204.81862 * 20 19 17 42 42 H 1.09006 * 109.47202 * 324.82157 * 20 19 17 43 43 H 1.09001 * 109.47134 * 210.00388 * 21 19 17 44 44 H 1.09001 * 109.47100 * 330.00088 * 21 19 17 45 45 H 0.96998 * 120.00236 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 0.0640 2.2811 6 8 1.9981 1.2519 2.2504 7 6 2.7183 -0.5772 3.5494 8 1 2.0088 -1.3369 3.8774 9 6 4.0783 -1.2279 3.2891 10 7 2.8574 0.4438 4.5909 11 6 3.6701 1.5002 4.4658 12 8 4.3711 1.7370 3.5056 13 6 3.5724 2.3537 5.7115 14 6 2.5591 1.5939 6.5916 15 6 2.1865 0.3940 5.7484 16 8 1.4048 -0.4748 6.0701 17 6 2.0324 -0.7104 -1.2304 18 8 2.4736 -1.8367 -1.1428 19 7 1.9913 -0.0941 -2.4284 20 6 1.5690 1.3058 -2.5178 21 6 2.3688 -0.8242 -3.6410 22 6 1.1505 -1.4918 -4.2253 23 1 0.1911 -1.3834 -3.7414 24 6 1.2610 -2.2417 -5.3770 25 7 2.4295 -2.3742 -5.9659 26 14 -0.2489 -3.0698 -6.1008 27 1 -0.9068 -2.1474 -7.0609 28 1 0.1580 -4.3112 -6.8068 29 1 -1.1982 -3.4087 -5.0103 30 1 -0.3633 0.4158 -0.9398 31 1 -0.3633 0.6060 0.8299 32 1 -0.3633 -1.0217 0.1098 33 1 4.7878 -0.4682 2.9611 34 1 4.4405 -1.6921 4.2063 35 1 3.9752 -1.9875 2.5141 36 1 3.2003 3.3494 5.4703 37 1 4.5411 2.4148 6.2074 38 1 1.6828 2.2117 6.7883 39 1 3.0212 1.2770 7.5266 40 1 2.4229 1.9558 -2.3267 41 1 1.1775 1.5043 -3.5155 42 1 0.7924 1.4992 -1.7776 43 1 2.7861 -0.1284 -4.3690 44 1 3.1136 -1.5804 -3.3928 45 1 2.5072 -2.9015 -6.7763 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919261536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:09 Heat of formation + Delta-G solvation = -194.952847 kcal Electronic energy + Delta-G solvation = -30567.079552 eV Core-core repulsion = 26163.997315 eV Total energy + Delta-G solvation = -4403.082238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.26182 -41.89710 -40.58287 -39.69567 -37.89213 -37.02092 -36.74043 -35.55861 -34.87439 -33.14467 -31.40420 -29.74503 -27.65504 -27.13079 -26.71067 -25.87725 -24.45804 -23.45375 -22.61812 -20.63414 -20.36797 -19.23268 -18.72486 -18.68445 -18.10456 -17.97979 -17.58976 -17.27374 -17.16319 -16.65845 -16.30004 -16.12345 -15.73976 -15.32371 -15.14616 -14.90546 -14.84222 -14.66745 -14.35156 -14.14085 -14.02204 -13.83159 -13.67184 -13.58667 -13.43203 -13.36313 -13.14821 -13.08011 -12.89482 -12.73674 -12.54146 -12.23636 -12.10350 -12.07810 -11.94176 -11.74783 -11.62244 -11.09141 -11.07757 -10.70117 -10.66226 -9.57819 -8.25164 -6.40303 0.49229 0.71561 0.84309 1.36331 1.39597 1.45437 1.48303 1.53873 1.72972 2.24475 2.39368 3.05007 3.11265 3.23980 3.27898 3.32624 3.58650 3.62179 3.64689 3.72376 3.74925 3.99594 4.20147 4.21765 4.40994 4.47902 4.50707 4.57521 4.59778 4.77466 4.78750 4.88045 4.91560 4.94158 4.95339 4.99751 5.08668 5.17302 5.47567 5.70846 5.74510 6.00084 6.26912 6.28163 6.52605 6.67559 6.68156 7.13351 7.32325 8.82655 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024760 B = 0.002455 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.605367 B =11404.631675 C =11582.619344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.081 3.919 3 H 0.117 0.883 4 O -0.335 6.335 5 C 0.455 3.545 6 O -0.510 6.510 7 C 0.137 3.863 8 H 0.153 0.847 9 C -0.155 4.155 10 N -0.570 5.570 11 C 0.518 3.482 12 O -0.513 6.513 13 C -0.139 4.139 14 C -0.135 4.135 15 C 0.524 3.476 16 O -0.518 6.518 17 C 0.503 3.497 18 O -0.575 6.575 19 N -0.600 5.600 20 C 0.067 3.933 21 C 0.258 3.742 22 C -0.545 4.545 23 H 0.058 0.942 24 C 0.008 3.992 25 N -0.928 5.928 26 Si 0.970 3.030 27 H -0.262 1.262 28 H -0.282 1.282 29 H -0.271 1.271 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.141 0.859 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.157 0.843 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.031 0.969 44 H 0.000 1.000 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 13.171 28.198 31.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.023 3.977 3 H 0.134 0.866 4 O -0.250 6.250 5 C 0.297 3.703 6 O -0.398 6.398 7 C 0.032 3.968 8 H 0.171 0.829 9 C -0.213 4.213 10 N -0.314 5.314 11 C 0.310 3.690 12 O -0.385 6.385 13 C -0.178 4.178 14 C -0.174 4.174 15 C 0.317 3.683 16 O -0.391 6.391 17 C 0.289 3.711 18 O -0.454 6.454 19 N -0.332 5.332 20 C -0.075 4.075 21 C 0.138 3.862 22 C -0.583 4.583 23 H 0.077 0.923 24 C -0.191 4.191 25 N -0.568 5.568 26 Si 0.794 3.206 27 H -0.187 1.187 28 H -0.207 1.207 29 H -0.196 1.196 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.158 0.842 37 H 0.170 0.830 38 H 0.164 0.836 39 H 0.174 0.826 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.049 0.951 44 H 0.019 0.981 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.380 12.547 27.657 30.373 hybrid contribution -0.458 -0.811 -1.383 1.668 sum -0.838 11.736 26.274 28.788 Atomic orbital electron populations 1.22165 0.89631 1.04314 1.05375 1.22592 0.97563 0.96879 0.80698 0.86555 1.86602 1.76685 1.41913 1.19836 1.24186 0.73999 0.86047 0.86086 1.90623 1.48172 1.16682 1.84275 1.20828 1.02602 0.90627 0.82714 0.82942 1.22085 0.92532 1.01456 1.05220 1.46985 1.41901 1.24804 1.17737 1.21903 0.76424 0.80604 0.90097 1.90776 1.39756 1.71964 1.36049 1.22604 1.04561 1.00166 0.90457 1.22616 1.02808 0.92412 0.99572 1.21871 0.77253 0.88180 0.81030 1.90789 1.33675 1.40400 1.74260 1.20527 0.79149 0.86407 0.84998 1.90655 1.47530 1.20931 1.86310 1.48062 1.64880 1.13786 1.06448 1.22149 1.00902 0.79616 1.04815 1.18892 0.95327 0.91303 0.80723 1.21679 0.95076 1.32002 1.09543 0.92334 1.25883 0.99495 0.96614 0.97146 1.70056 1.25403 1.41163 1.20150 0.85375 0.78736 0.78061 0.78401 1.18716 1.20741 1.19576 0.88278 0.88976 0.91405 0.91862 0.87759 0.89547 0.84156 0.83014 0.83564 0.82564 0.91172 0.89812 0.89185 0.95148 0.98147 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 9.19 71.98 0.66 -3.76 16 2 C 0.08 2.79 2.14 29.85 0.06 2.85 16 3 H 0.12 3.68 6.31 -2.39 -0.02 3.67 16 4 O -0.34 -11.72 9.37 -45.20 -0.42 -12.14 16 5 C 0.45 13.72 6.87 71.23 0.49 14.21 16 6 O -0.51 -16.35 14.05 27.35 0.38 -15.96 16 7 C 0.14 3.17 3.22 44.24 0.14 3.31 16 8 H 0.15 3.19 7.41 -2.39 -0.02 3.17 16 9 C -0.16 -3.35 9.10 71.98 0.65 -2.70 16 10 N -0.57 -10.66 2.27 -738.13 -1.68 -12.34 16 11 C 0.52 9.39 6.70 87.99 0.59 9.98 16 12 O -0.51 -14.10 15.13 12.28 0.19 -13.91 16 13 C -0.14 -0.62 7.03 30.46 0.21 -0.40 16 14 C -0.14 -0.36 7.03 30.46 0.21 -0.14 16 15 C 0.52 7.76 8.08 87.99 0.71 8.47 16 16 O -0.52 -11.29 17.23 -2.86 -0.05 -11.34 16 17 C 0.50 22.62 6.95 87.66 0.61 23.23 16 18 O -0.57 -31.63 16.13 15.23 0.25 -31.38 16 19 N -0.60 -26.46 2.86 -851.13 -2.43 -28.89 16 20 C 0.07 2.09 9.79 127.77 1.25 3.34 16 21 C 0.26 14.16 5.18 85.63 0.44 14.60 16 22 C -0.54 -31.29 9.39 25.60 0.24 -31.05 16 23 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 24 C 0.01 0.45 5.46 84.65 0.46 0.91 16 25 N -0.93 -56.31 13.29 21.45 0.28 -56.03 16 26 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 27 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 28 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 29 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 30 H 0.10 2.55 6.33 -2.39 -0.02 2.54 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 1.59 6.62 -2.39 -0.02 1.58 16 34 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.09 2.05 8.11 -2.39 -0.02 2.03 16 36 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.15 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.15 -0.15 8.14 -2.38 -0.02 -0.17 16 39 H 0.16 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.08 2.60 8.03 -2.39 -0.02 2.58 16 42 H 0.09 2.25 4.92 -2.38 -0.01 2.23 16 43 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 44 H 0.00 0.03 7.36 -2.39 -0.02 0.01 16 45 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -88.78 381.73 6.31 -82.47 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.02 Total: 9.92 kcal Atomic # 6 Polarization: 36.10 SS G_CDS: 6.75 Total: 42.85 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -3.83 Total: -97.26 kcal Atomic # 8 Polarization: -85.08 SS G_CDS: 0.34 Total: -84.74 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -88.78 6.31 -82.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919261536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.484 kcal (2) G-P(sol) polarization free energy of solvation -88.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds