Wall clock time and date at job start Sat Apr 11 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 120.00209 * 2 1 4 4 C 1.50698 * 109.47066 * 274.99988 * 3 2 1 5 5 H 1.08007 * 119.99908 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00448 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99467 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00408 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46641 * 90.00222 * 8 6 4 10 10 H 1.48502 * 109.47174 * 209.99988 * 8 6 4 11 11 H 1.48496 * 109.47119 * 330.00435 * 8 6 4 12 12 S 1.65596 * 119.99829 * 179.97438 * 2 1 3 13 13 O 1.42102 * 106.40362 * 156.46024 * 12 2 1 14 14 O 1.42103 * 106.40474 * 23.53976 * 12 2 1 15 15 N 1.65600 * 107.21867 * 269.99796 * 12 2 1 16 16 C 1.47087 * 121.01087 * 90.00139 * 15 12 2 17 17 C 1.53252 * 109.22382 * 116.41090 * 16 15 12 18 18 N 1.46555 * 109.23803 * 45.99037 * 17 16 15 19 19 N 1.39745 * 127.32088 * 161.46796 * 18 17 16 20 20 C 1.31013 * 108.17965 * 179.48908 * 19 18 17 21 21 C 1.50695 * 125.87958 * 180.09928 * 20 19 18 22 22 C 1.52998 * 117.50247 * 163.77491 * 21 20 19 23 23 C 1.53000 * 117.49926 * 95.11097 * 21 20 19 24 24 C 1.40073 * 108.25102 * 0.13941 * 20 19 18 25 25 C 1.34641 * 107.75211 * 0.05800 * 24 20 19 26 26 C 1.47496 * 121.01286 * 269.97471 * 15 12 2 27 27 H 1.09004 * 109.46957 * 270.00446 * 1 2 3 28 28 H 1.09003 * 109.46806 * 29.99872 * 1 2 3 29 29 H 1.08998 * 109.47440 * 149.99829 * 1 2 3 30 30 H 1.09001 * 109.47284 * 35.00008 * 3 2 1 31 31 H 1.09003 * 109.47088 * 155.00290 * 3 2 1 32 32 H 0.97002 * 119.99537 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.51132 * 356.49045 * 16 15 12 34 34 H 1.09001 * 109.55385 * 236.36740 * 16 15 12 35 35 H 1.08997 * 109.51488 * 286.06231 * 17 16 15 36 36 H 1.09003 * 109.51091 * 165.91632 * 17 16 15 37 37 H 1.09004 * 115.54806 * 309.44702 * 21 20 19 38 38 H 1.08997 * 117.49921 * 359.97438 * 22 21 20 39 39 H 1.09000 * 117.49944 * 145.02201 * 22 21 20 40 40 H 1.08998 * 117.49777 * 214.98506 * 23 21 20 41 41 H 1.08997 * 117.49493 * 359.97438 * 23 21 20 42 42 H 1.08004 * 126.12498 * 180.02562 * 24 20 19 43 43 H 1.09002 * 109.94913 * 342.33835 * 26 15 12 44 44 H 1.09006 * 109.94852 * 103.58483 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7657 -1.4154 5 1 1.9289 1.1934 -2.2332 6 6 2.9998 2.9508 -1.6664 7 7 3.5026 3.6474 -0.6706 8 14 3.1788 3.5664 -3.4210 9 1 2.0180 4.4264 -3.7646 10 1 4.4318 4.3539 -3.5438 11 1 3.2289 2.4084 -4.3492 12 16 2.2929 -1.4341 0.0006 13 8 3.5759 -1.1571 -0.5439 14 8 1.4113 -2.4068 -0.5434 15 7 2.5381 -1.8579 1.5826 16 6 1.5585 -2.6822 2.3068 17 6 2.2103 -4.0126 2.6991 18 7 3.5356 -3.7519 3.2676 19 7 4.3009 -4.6106 4.0613 20 6 5.4253 -4.0046 4.3526 21 6 6.5438 -4.5720 5.1880 22 6 7.9080 -3.8846 5.1029 23 6 7.6988 -5.2544 4.4524 24 6 5.4086 -2.7379 3.7548 25 6 4.2393 -2.6085 3.0999 26 6 3.7456 -1.4209 2.3081 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 1.6502 2.0043 0.5894 31 1 3.1859 1.1176 0.4343 32 1 3.9661 4.4810 -0.8472 33 1 0.6983 -2.8734 1.6652 34 1 1.2331 -2.1573 3.2050 35 1 2.3108 -4.6432 1.8157 36 1 1.5896 -4.5178 3.4391 37 1 6.2475 -4.9847 6.1524 38 1 7.9966 -3.0221 4.4423 39 1 8.5093 -3.8454 6.0111 40 1 8.1626 -6.1158 4.9330 41 1 7.6494 -5.2932 3.3643 42 1 6.1929 -1.9975 3.8098 43 1 4.5103 -1.1025 1.5996 44 1 3.4979 -0.6011 2.9826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921703768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:19 Heat of formation + Delta-G solvation = 43.181224 kcal Electronic energy + Delta-G solvation = -28168.780253 eV Core-core repulsion = 24251.069906 eV Total energy + Delta-G solvation = -3917.710347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.55386 -37.78440 -36.89004 -36.43791 -35.60721 -35.33240 -32.94132 -32.50288 -30.99253 -28.69927 -27.86335 -25.76490 -25.16525 -24.04736 -23.01646 -22.46948 -22.34319 -19.69415 -19.62709 -18.25215 -17.56010 -17.08139 -16.76092 -16.44734 -16.13036 -15.69326 -15.48008 -14.92233 -14.60078 -14.33569 -14.21401 -13.76853 -13.58796 -13.44700 -13.18542 -12.72186 -12.53884 -12.42659 -12.23548 -12.17194 -11.96965 -11.76890 -11.66131 -11.51140 -11.31430 -11.24106 -11.15852 -10.95943 -10.77743 -10.75245 -10.60599 -10.32362 -10.10422 -9.83941 -9.38649 -9.00482 -8.50853 -8.49943 -8.17930 -6.12778 -4.17132 0.91908 1.80873 2.32135 2.65387 3.21679 3.27919 3.34724 3.40476 3.67943 3.86891 4.16507 4.33708 4.39779 4.49819 4.59126 4.72019 4.75375 4.81791 4.98270 5.09707 5.17438 5.22192 5.29511 5.40945 5.44941 5.47172 5.51860 5.56730 5.62918 5.67471 5.76488 5.89647 5.94634 5.96335 6.10734 6.17172 6.33447 6.49504 6.61280 6.93947 7.11419 7.28518 7.48553 7.72217 7.84381 8.12247 8.85068 9.48663 10.95755 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015438 B = 0.003263 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.274261 B = 8578.845189 C = 9742.169353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.993 5.993 3 C 0.256 3.744 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.272 1.272 12 S 2.779 3.221 13 O -0.954 6.954 14 O -0.991 6.991 15 N -1.020 6.020 16 C 0.110 3.890 17 C 0.120 3.880 18 N -0.364 5.364 19 N -0.290 5.290 20 C 0.101 3.899 21 C -0.077 4.077 22 C -0.165 4.165 23 C -0.167 4.167 24 C -0.259 4.259 25 C 0.085 3.915 26 C 0.182 3.818 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.038 0.962 32 H 0.264 0.736 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.151 0.849 43 H 0.123 0.877 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.206 -12.977 12.737 18.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.836 5.836 3 C 0.135 3.865 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 S 2.789 3.211 13 O -0.937 6.937 14 O -0.975 6.975 15 N -0.857 5.857 16 C -0.017 4.017 17 C -0.003 4.003 18 N -0.147 5.147 19 N -0.112 5.112 20 C -0.065 4.065 21 C -0.097 4.097 22 C -0.202 4.202 23 C -0.205 4.205 24 C -0.288 4.288 25 C -0.044 4.044 26 C 0.055 3.945 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.135 0.865 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.169 0.831 43 H 0.141 0.859 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.297 -14.377 12.070 18.775 hybrid contribution 0.357 1.391 -0.671 1.585 sum 0.060 -12.986 11.400 17.280 Atomic orbital electron populations 1.21379 0.79964 1.03641 1.00288 1.57665 1.14455 1.23278 1.88203 1.19091 0.90940 0.78642 0.97864 1.21464 1.36382 1.06399 0.92815 0.92186 1.24924 0.94996 0.96450 0.97548 1.69913 1.37171 1.15291 1.30961 0.86509 0.77597 0.78870 0.84583 1.20584 1.20973 1.19684 1.02144 0.73661 0.72926 0.72413 1.93634 1.40394 1.84841 1.74844 1.93523 1.67388 1.60465 1.76087 1.58847 1.28895 1.65212 1.32715 1.21681 0.91668 0.89504 0.98880 1.22147 0.79933 0.98952 0.99274 1.48417 1.15324 1.11144 1.39814 1.77191 1.04929 1.16196 1.12858 1.21370 0.93618 0.93167 0.98345 1.20088 0.86072 1.04665 0.98910 1.23031 0.97306 0.96669 1.03238 1.22998 1.00818 0.96271 1.00369 1.20830 0.99573 0.99608 1.08822 1.21212 0.93203 0.90303 0.99694 1.20358 0.86752 0.91963 0.95445 0.94197 0.90165 0.91578 0.94577 0.94459 0.92603 0.86723 0.89910 0.89436 0.87982 0.86467 0.88008 0.88166 0.88341 0.88582 0.83143 0.85868 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.49 10.68 59.85 0.64 2.13 16 2 N -0.99 -19.38 3.23 -123.05 -0.40 -19.77 16 3 C 0.26 6.10 5.08 -5.19 -0.03 6.07 16 4 C -0.53 -14.45 9.38 -34.44 -0.32 -14.77 16 5 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -25.27 13.29 55.43 0.74 -24.54 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 S 2.78 52.31 6.11 -107.50 -0.66 51.65 16 13 O -0.95 -21.81 15.75 -57.17 -0.90 -22.71 16 14 O -0.99 -19.16 15.45 -57.17 -0.88 -20.05 16 15 N -1.02 -14.78 3.35 -114.13 -0.38 -15.16 16 16 C 0.11 1.21 6.39 -3.59 -0.02 1.19 16 17 C 0.12 1.35 7.44 -3.88 -0.03 1.32 16 18 N -0.36 -5.15 4.03 -56.94 -0.23 -5.38 16 19 N -0.29 -4.34 12.61 33.74 0.43 -3.91 16 20 C 0.10 1.35 6.86 -82.26 -0.56 0.79 16 21 C -0.08 -0.79 6.33 -91.78 -0.58 -1.37 16 22 C -0.16 -1.36 10.02 -26.69 -0.27 -1.63 16 23 C -0.17 -1.48 10.24 -26.69 -0.27 -1.76 16 24 C -0.26 -3.46 10.06 -40.17 -0.40 -3.86 16 25 C 0.08 1.20 6.71 -82.17 -0.55 0.65 16 26 C 0.18 2.53 6.88 -4.49 -0.03 2.50 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 29 H 0.07 0.98 7.02 -51.93 -0.36 0.62 16 30 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 31 H 0.04 0.93 7.61 -51.93 -0.40 0.53 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.11 1.13 7.10 -51.92 -0.37 0.76 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.10 0.86 7.16 -51.93 -0.37 0.49 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.15 1.70 7.40 -52.48 -0.39 1.31 16 43 H 0.12 1.86 6.99 -51.93 -0.36 1.50 16 44 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 375.06 15.07 5.65 5.65 Total: -1.00 -34.38 375.06 -10.63 -45.01 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.44 Total: -0.04 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -2.53 Total: -7.10 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: 0.15 Total: -68.77 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -1.78 Total: -42.76 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 52.31 SS G_CDS: -0.66 Total: 51.65 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.38 -10.63 -45.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921703768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.192 kcal (2) G-P(sol) polarization free energy of solvation -34.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds