Wall clock time and date at job start Sat Apr 11 2020 05:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 120.00209 * 2 1 4 4 C 1.50698 * 109.47066 * 274.99988 * 3 2 1 5 5 H 1.08007 * 119.99908 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00448 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99467 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00408 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46641 * 90.00222 * 8 6 4 10 10 H 1.48502 * 109.47174 * 209.99988 * 8 6 4 11 11 H 1.48496 * 109.47119 * 330.00435 * 8 6 4 12 12 S 1.65596 * 119.99829 * 179.97438 * 2 1 3 13 13 O 1.42102 * 106.40362 * 156.46024 * 12 2 1 14 14 O 1.42103 * 106.40474 * 23.53976 * 12 2 1 15 15 N 1.65600 * 107.21867 * 269.99796 * 12 2 1 16 16 C 1.47087 * 121.01087 * 90.00139 * 15 12 2 17 17 C 1.53252 * 109.22382 * 116.41090 * 16 15 12 18 18 N 1.46555 * 109.23803 * 45.99037 * 17 16 15 19 19 N 1.39745 * 127.32088 * 161.46796 * 18 17 16 20 20 C 1.31013 * 108.17965 * 179.48908 * 19 18 17 21 21 C 1.50695 * 125.87958 * 180.09928 * 20 19 18 22 22 C 1.52998 * 117.50247 * 163.77491 * 21 20 19 23 23 C 1.53000 * 117.49926 * 95.11097 * 21 20 19 24 24 C 1.40073 * 108.25102 * 0.13941 * 20 19 18 25 25 C 1.34641 * 107.75211 * 0.05800 * 24 20 19 26 26 C 1.47496 * 121.01286 * 269.97471 * 15 12 2 27 27 H 1.09004 * 109.46957 * 270.00446 * 1 2 3 28 28 H 1.09003 * 109.46806 * 29.99872 * 1 2 3 29 29 H 1.08998 * 109.47440 * 149.99829 * 1 2 3 30 30 H 1.09001 * 109.47284 * 35.00008 * 3 2 1 31 31 H 1.09003 * 109.47088 * 155.00290 * 3 2 1 32 32 H 0.97002 * 119.99537 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.51132 * 356.49045 * 16 15 12 34 34 H 1.09001 * 109.55385 * 236.36740 * 16 15 12 35 35 H 1.08997 * 109.51488 * 286.06231 * 17 16 15 36 36 H 1.09003 * 109.51091 * 165.91632 * 17 16 15 37 37 H 1.09004 * 115.54806 * 309.44702 * 21 20 19 38 38 H 1.08997 * 117.49921 * 359.97438 * 22 21 20 39 39 H 1.09000 * 117.49944 * 145.02201 * 22 21 20 40 40 H 1.08998 * 117.49777 * 214.98506 * 23 21 20 41 41 H 1.08997 * 117.49493 * 359.97438 * 23 21 20 42 42 H 1.08004 * 126.12498 * 180.02562 * 24 20 19 43 43 H 1.09002 * 109.94913 * 342.33835 * 26 15 12 44 44 H 1.09006 * 109.94852 * 103.58483 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7657 -1.4154 5 1 1.9289 1.1934 -2.2332 6 6 2.9998 2.9508 -1.6664 7 7 3.5026 3.6474 -0.6706 8 14 3.1788 3.5664 -3.4210 9 1 2.0180 4.4264 -3.7646 10 1 4.4318 4.3539 -3.5438 11 1 3.2289 2.4084 -4.3492 12 16 2.2929 -1.4341 0.0006 13 8 3.5759 -1.1571 -0.5439 14 8 1.4113 -2.4068 -0.5434 15 7 2.5381 -1.8579 1.5826 16 6 1.5585 -2.6822 2.3068 17 6 2.2103 -4.0126 2.6991 18 7 3.5356 -3.7519 3.2676 19 7 4.3009 -4.6106 4.0613 20 6 5.4253 -4.0046 4.3526 21 6 6.5438 -4.5720 5.1880 22 6 7.9080 -3.8846 5.1029 23 6 7.6988 -5.2544 4.4524 24 6 5.4086 -2.7379 3.7548 25 6 4.2393 -2.6085 3.0999 26 6 3.7456 -1.4209 2.3081 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 1.6502 2.0043 0.5894 31 1 3.1859 1.1176 0.4343 32 1 3.9661 4.4810 -0.8472 33 1 0.6983 -2.8734 1.6652 34 1 1.2331 -2.1573 3.2050 35 1 2.3108 -4.6432 1.8157 36 1 1.5896 -4.5178 3.4391 37 1 6.2475 -4.9847 6.1524 38 1 7.9966 -3.0221 4.4423 39 1 8.5093 -3.8454 6.0111 40 1 8.1626 -6.1158 4.9330 41 1 7.6494 -5.2932 3.3643 42 1 6.1929 -1.9975 3.8098 43 1 4.5103 -1.1025 1.5996 44 1 3.4979 -0.6011 2.9826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921703768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:18 Heat of formation + Delta-G solvation = 19.587592 kcal Electronic energy + Delta-G solvation = -28169.803349 eV Core-core repulsion = 24251.069906 eV Total energy + Delta-G solvation = -3918.733444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.56739 -38.68719 -38.45808 -37.35923 -37.24127 -36.94120 -34.50651 -33.94844 -32.04557 -29.72179 -29.63925 -26.87341 -26.74453 -25.00715 -24.20031 -23.91046 -23.15510 -20.78649 -20.62390 -19.56885 -18.97469 -18.38112 -18.36307 -18.03931 -17.18743 -17.04787 -16.52429 -16.33029 -15.83805 -15.45544 -15.18638 -15.12697 -14.99205 -14.72917 -14.31231 -14.10254 -13.92314 -13.84364 -13.55117 -13.38243 -13.29301 -13.05859 -13.02980 -12.95653 -12.69542 -12.56067 -12.47677 -12.37737 -12.30667 -11.98311 -11.90412 -11.75662 -11.48986 -11.15158 -10.61409 -10.50042 -10.01790 -9.81200 -9.52481 -8.20628 -6.31850 -0.54562 0.75930 1.34334 1.39084 1.41672 1.51608 1.65698 1.91442 2.37037 2.46766 2.93945 3.10461 3.14045 3.32395 3.33518 3.67160 3.75518 3.99344 4.02216 4.07442 4.12123 4.15934 4.29866 4.39483 4.41713 4.54135 4.62235 4.63856 4.70475 4.74598 4.81905 4.83295 4.99881 5.05920 5.09145 5.16821 5.22822 5.29279 5.32063 5.47522 5.63972 5.69571 5.90501 5.94681 6.10244 6.69281 6.75801 7.37026 8.86664 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015438 B = 0.003263 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.274261 B = 8578.845189 C = 9742.169353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.000 6.000 3 C 0.271 3.729 4 C -0.551 4.551 5 H 0.049 0.951 6 C 0.016 3.984 7 N -0.920 5.920 8 Si 0.952 3.048 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.276 1.276 12 S 2.796 3.204 13 O -1.002 7.002 14 O -0.998 6.998 15 N -1.014 6.014 16 C 0.106 3.894 17 C 0.113 3.887 18 N -0.372 5.372 19 N -0.316 5.316 20 C 0.096 3.904 21 C -0.095 4.095 22 C -0.151 4.151 23 C -0.166 4.166 24 C -0.267 4.267 25 C 0.072 3.928 26 C 0.183 3.817 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.021 0.979 32 H 0.268 0.732 33 H 0.129 0.871 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.079 0.921 42 H 0.165 0.835 43 H 0.105 0.895 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.257 -13.460 13.863 19.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.842 5.842 3 C 0.148 3.852 4 C -0.590 4.590 5 H 0.068 0.932 6 C -0.184 4.184 7 N -0.560 5.560 8 Si 0.777 3.223 9 H -0.191 1.191 10 H -0.203 1.203 11 H -0.201 1.201 12 S 2.806 3.194 13 O -0.985 6.985 14 O -0.982 6.982 15 N -0.853 5.853 16 C -0.020 4.020 17 C -0.009 4.009 18 N -0.155 5.155 19 N -0.138 5.138 20 C -0.069 4.069 21 C -0.115 4.115 22 C -0.188 4.188 23 C -0.204 4.204 24 C -0.297 4.297 25 C -0.057 4.057 26 C 0.056 3.944 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.147 0.853 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.115 0.885 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.098 0.902 42 H 0.183 0.817 43 H 0.123 0.877 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.800 -14.873 13.187 19.894 hybrid contribution 0.488 1.451 -0.966 1.810 sum -0.313 -13.422 12.222 18.155 Atomic orbital electron populations 1.21629 0.77774 1.03705 1.02807 1.57539 1.15927 1.21844 1.88857 1.18655 0.90604 0.80128 0.95845 1.21815 1.36362 1.06624 0.94227 0.93241 1.25674 0.94820 0.96776 1.01166 1.69989 1.37725 1.15688 1.32576 0.85650 0.78156 0.78301 0.80191 1.19115 1.20345 1.20123 1.01370 0.72467 0.72537 0.73039 1.93568 1.42754 1.85455 1.76772 1.93503 1.67342 1.60353 1.76971 1.58427 1.29840 1.65431 1.31624 1.22035 0.91027 0.89106 0.99828 1.22383 0.79445 0.99194 0.99873 1.48669 1.16061 1.10932 1.39834 1.77140 1.05831 1.16991 1.13818 1.21883 0.93910 0.93041 0.98086 1.20250 0.85925 1.06164 0.99126 1.23133 0.95836 0.96000 1.03863 1.23048 1.00127 0.97625 0.99553 1.21138 0.99760 1.00139 1.08636 1.21302 0.93800 0.90500 1.00091 1.20390 0.86116 0.92687 0.95190 0.90438 0.91101 0.90530 0.95061 0.96079 0.92327 0.85263 0.87161 0.90050 0.85107 0.85398 0.88466 0.85802 0.86306 0.90208 0.81733 0.87704 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.59 10.68 127.77 1.36 3.96 16 2 N -1.00 -38.62 3.23 -543.21 -1.75 -40.37 16 3 C 0.27 13.05 5.08 85.63 0.43 13.48 16 4 C -0.55 -30.36 9.38 25.60 0.24 -30.12 16 5 H 0.05 2.76 7.81 -2.91 -0.02 2.73 16 6 C 0.02 0.86 5.46 84.65 0.46 1.33 16 7 N -0.92 -52.33 13.29 21.45 0.28 -52.04 16 8 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 9 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 S 2.80 104.92 6.11 -56.49 -0.34 104.58 16 13 O -1.00 -47.14 15.75 -128.00 -2.02 -49.16 16 14 O -1.00 -37.79 15.45 -128.00 -1.98 -39.77 16 15 N -1.01 -28.46 3.35 -514.98 -1.73 -30.19 16 16 C 0.11 2.09 6.39 86.35 0.55 2.64 16 17 C 0.11 2.36 7.44 86.45 0.64 3.00 16 18 N -0.37 -10.18 4.03 -334.05 -1.35 -11.53 16 19 N -0.32 -9.23 12.61 -47.18 -0.59 -9.83 16 20 C 0.10 2.52 6.86 43.12 0.30 2.82 16 21 C -0.09 -1.82 6.33 -11.54 -0.07 -1.89 16 22 C -0.15 -2.21 10.02 30.62 0.31 -1.90 16 23 C -0.17 -2.73 10.24 30.62 0.31 -2.41 16 24 C -0.27 -7.02 10.06 21.89 0.22 -6.80 16 25 C 0.07 2.01 6.71 41.30 0.28 2.28 16 26 C 0.18 5.05 6.88 85.55 0.59 5.64 16 27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 29 H 0.08 2.14 7.02 -2.39 -0.02 2.12 16 30 H 0.03 1.52 8.11 -2.39 -0.02 1.50 16 31 H 0.02 1.08 7.61 -2.39 -0.02 1.06 16 32 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.13 2.20 7.10 -2.38 -0.02 2.18 16 34 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.10 1.52 7.16 -2.39 -0.02 1.50 16 39 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.12 1.44 8.14 -2.39 -0.02 1.43 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.17 3.64 7.40 -2.91 -0.02 3.62 16 43 H 0.10 3.30 6.99 -2.39 -0.02 3.28 16 44 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 Total: -1.00 -74.44 375.06 -0.82 -75.26 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 1.01 Total: 15.18 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 5.63 Total: -7.97 kcal Atomic # 7 Polarization: -138.82 SS G_CDS: -5.13 Total: -143.95 kcal Atomic # 8 Polarization: -84.93 SS G_CDS: -3.99 Total: -88.92 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 104.92 SS G_CDS: -0.34 Total: 104.58 kcal Total: -74.44 -0.82 -75.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921703768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.844 kcal (2) G-P(sol) polarization free energy of solvation -74.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds