Wall clock time and date at job start Sat Apr 11 2020 05:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00410 * 2 1 4 4 H 1.08993 * 109.52389 * 29.87367 * 3 2 1 5 5 C 1.53096 * 109.52111 * 269.68738 * 3 2 1 6 6 O 1.42899 * 109.41652 * 182.48134 * 5 3 2 7 7 C 1.42913 * 114.09245 * 61.16063 * 6 5 3 8 8 C 1.53098 * 109.48621 * 298.88600 * 7 6 5 9 9 C 1.53170 * 109.52347 * 150.00179 * 3 2 1 10 10 H 1.09002 * 109.54849 * 56.93011 * 9 3 2 11 11 N 1.46500 * 109.54576 * 296.75538 * 9 3 2 12 12 C 1.46506 * 119.99600 * 300.17430 * 11 9 3 13 13 C 1.34773 * 120.00431 * 120.17889 * 11 9 3 14 14 O 1.21593 * 119.99894 * 359.97438 * 13 11 9 15 15 N 1.34777 * 120.00097 * 179.72742 * 13 11 9 16 16 C 1.46504 * 119.99854 * 180.27545 * 15 13 11 17 17 H 1.09001 * 109.47451 * 34.99522 * 16 15 13 18 18 C 1.50700 * 109.47198 * 154.99672 * 16 15 13 19 19 H 1.08005 * 119.99818 * 359.97438 * 18 16 15 20 20 C 1.37872 * 120.00334 * 179.97438 * 18 16 15 21 21 N 1.31521 * 119.99908 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 120.00358 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47327 * 59.99945 * 22 20 18 24 24 H 1.48496 * 109.47294 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47301 * 300.00294 * 22 20 18 26 26 C 1.52997 * 109.46930 * 274.99613 * 16 15 13 27 27 F 1.39898 * 109.47297 * 60.00052 * 26 16 15 28 28 F 1.39899 * 109.47209 * 180.02562 * 26 16 15 29 29 F 1.39909 * 109.47143 * 300.00304 * 26 16 15 30 30 H 1.08997 * 109.47088 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46186 * 299.99812 * 1 2 3 32 32 H 1.08995 * 109.47109 * 59.99505 * 1 2 3 33 33 H 1.08996 * 109.47841 * 302.47018 * 5 3 2 34 34 H 1.09001 * 109.48009 * 62.49912 * 5 3 2 35 35 H 1.08994 * 109.48152 * 58.82351 * 7 6 5 36 36 H 1.09002 * 109.47858 * 178.84745 * 7 6 5 37 37 H 1.09006 * 109.45856 * 297.61963 * 8 7 6 38 38 H 1.08998 * 109.60311 * 177.42412 * 8 7 6 39 39 H 1.08994 * 109.47014 * 270.00064 * 12 11 9 40 40 H 1.09003 * 109.47017 * 30.00282 * 12 11 9 41 41 H 1.09002 * 109.46900 * 149.99874 * 12 11 9 42 42 H 0.97000 * 119.99736 * 0.26819 * 15 13 11 43 43 H 0.96993 * 120.00125 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3448 2.0005 0.5117 5 6 2.2256 1.7695 -1.4429 6 8 2.8598 3.0501 -1.4404 7 6 4.1473 3.0623 -0.8204 8 6 4.0113 2.6492 0.6475 9 6 3.3607 1.2644 0.7218 10 1 4.0087 0.5310 0.2418 11 7 3.1558 0.8937 2.1242 12 6 2.3161 1.7283 2.9872 13 6 3.7397 -0.2149 2.6205 14 8 4.4364 -0.9077 1.9042 15 7 3.5556 -0.5529 3.9122 16 6 4.1954 -1.7547 4.4532 17 1 5.1710 -1.8886 3.9861 18 6 4.3679 -1.6046 5.9428 19 1 4.0348 -0.7039 6.4370 20 6 4.9511 -2.6171 6.6747 21 7 5.3572 -3.7138 6.0729 22 14 5.1643 -2.4314 8.5211 23 1 3.8349 -2.2488 9.1571 24 1 5.8129 -3.6495 9.0695 25 1 6.0153 -1.2478 8.8046 26 6 3.3187 -2.9742 4.1617 27 9 3.1584 -3.1135 2.7789 28 9 3.9292 -4.1218 4.6788 29 9 2.0663 -2.8023 4.7613 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 2.8581 1.0516 -1.9651 34 1 1.2630 1.8416 -1.9491 35 1 4.8050 2.3614 -1.3345 36 1 4.5691 4.0657 -0.8783 37 1 3.3877 3.3731 1.1721 38 1 4.9975 2.6136 1.1103 39 1 2.9317 2.4885 3.4678 40 1 1.5451 2.2112 2.3868 41 1 1.8466 1.1059 3.7490 42 1 2.9997 -0.0003 4.4836 43 1 5.7670 -4.4262 6.5878 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932888472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:25 Heat of formation + Delta-G solvation = -240.461426 kcal Electronic energy + Delta-G solvation = -32724.868967 eV Core-core repulsion = 27777.956589 eV Total energy + Delta-G solvation = -4946.912378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.25758 -45.90566 -45.53519 -40.44284 -38.96030 -37.36281 -35.56272 -34.55016 -32.77816 -31.70630 -30.50981 -28.15734 -26.91093 -26.66297 -24.70481 -24.37101 -23.30995 -21.58788 -20.39850 -19.35357 -18.25555 -17.14196 -16.89563 -16.67929 -16.64575 -16.56336 -16.25885 -15.62176 -15.49669 -15.31607 -14.85292 -14.59064 -14.51959 -14.06631 -13.60631 -13.35542 -13.18543 -12.98331 -12.90516 -12.79388 -12.50744 -12.33812 -12.30398 -12.13347 -12.07238 -11.87718 -11.72984 -11.51756 -11.41967 -11.31901 -11.13505 -10.85372 -10.74202 -10.56047 -10.36026 -10.24055 -9.64244 -9.56088 -9.31818 -8.69228 -8.44782 -8.07518 -6.20436 -4.44406 2.98349 3.20813 3.25837 3.27715 3.37770 3.79135 3.84608 4.19447 4.46799 4.54100 4.65878 4.70619 4.78554 4.86268 4.91958 4.96877 5.08544 5.16254 5.19525 5.28133 5.42872 5.45423 5.47575 5.58786 5.61898 5.69711 5.72213 5.83973 5.90773 5.95692 6.03029 6.28781 6.67020 6.80294 6.92764 7.17543 7.25796 7.38694 7.62901 7.67996 8.51580 8.64542 9.17771 9.29133 10.71082 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018986 B = 0.003647 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.388145 B = 7674.957086 C = 8294.547064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.046 3.954 4 H 0.070 0.930 5 C 0.043 3.957 6 O -0.379 6.379 7 C 0.061 3.939 8 C -0.162 4.162 9 C 0.161 3.839 10 H 0.112 0.888 11 N -0.627 5.627 12 C 0.080 3.920 13 C 0.706 3.294 14 O -0.579 6.579 15 N -0.725 5.725 16 C 0.262 3.738 17 H 0.084 0.916 18 C -0.552 4.552 19 H 0.075 0.925 20 C 0.065 3.935 21 N -0.839 5.839 22 Si 0.915 3.085 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.273 1.273 26 C 0.416 3.584 27 F -0.214 7.214 28 F -0.138 7.138 29 F -0.211 7.211 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.393 0.607 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.131 13.028 -9.640 17.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C -0.014 4.014 4 H 0.088 0.912 5 C -0.034 4.034 6 O -0.297 6.297 7 C -0.017 4.017 8 C -0.201 4.201 9 C 0.056 3.944 10 H 0.130 0.870 11 N -0.365 5.365 12 C -0.064 4.064 13 C 0.407 3.593 14 O -0.456 6.456 15 N -0.379 5.379 16 C 0.156 3.844 17 H 0.102 0.898 18 C -0.589 4.589 19 H 0.093 0.907 20 C -0.144 4.144 21 N -0.472 5.472 22 Si 0.741 3.259 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.198 1.198 26 C 0.359 3.641 27 F -0.196 7.196 28 F -0.120 7.120 29 F -0.193 7.193 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.228 0.772 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.484 12.233 -10.186 17.188 hybrid contribution -0.659 0.023 1.398 1.546 sum -7.143 12.256 -8.788 16.687 Atomic orbital electron populations 1.22808 0.81295 1.02991 0.99479 1.88092 1.19328 1.25833 1.94769 1.23199 0.96142 0.85954 0.96125 0.91248 1.23054 0.98775 0.85577 0.96027 1.87932 1.32442 1.30144 1.79195 1.22643 0.84926 1.02576 0.91512 1.22626 1.02802 0.96603 0.98036 1.20931 0.95052 0.96895 0.81545 0.86993 1.46842 1.53073 1.26382 1.10204 1.21642 0.94637 0.95352 0.94733 1.15918 0.80244 0.80431 0.82666 1.90895 1.43332 1.52888 1.58456 1.45388 1.54191 1.29302 1.09015 1.19583 0.91474 0.76914 0.96418 0.89819 1.20821 1.43793 1.04891 0.89376 0.90674 1.25070 0.94768 0.94447 1.00075 1.70402 1.35195 1.05586 1.36050 0.86280 0.78622 0.77772 0.83182 1.19881 1.20883 1.19835 1.23150 0.79366 0.89508 0.72036 1.93087 1.96039 1.96754 1.33732 1.93396 1.81057 1.52321 1.85184 1.92977 1.46171 1.95969 1.84220 0.89457 0.94134 0.94324 0.91792 0.88670 0.92434 0.88211 0.90643 0.89470 0.92724 0.91748 0.91201 0.77174 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.82 101.05 1.09 1.43 16 2 O -0.36 -5.32 10.28 -35.23 -0.36 -5.68 16 3 C 0.05 0.56 2.16 -26.59 -0.06 0.50 16 4 H 0.07 0.76 6.19 -51.93 -0.32 0.44 16 5 C 0.04 0.46 6.47 37.21 0.24 0.70 16 6 O -0.38 -4.07 10.77 -35.23 -0.38 -4.45 16 7 C 0.06 0.56 6.84 37.21 0.25 0.82 16 8 C -0.16 -1.71 5.47 -26.59 -0.15 -1.85 16 9 C 0.16 2.24 2.29 -67.75 -0.15 2.09 16 10 H 0.11 1.89 6.90 -51.93 -0.36 1.53 16 11 N -0.63 -9.88 2.69 -179.45 -0.48 -10.36 16 12 C 0.08 0.94 9.20 59.85 0.55 1.49 16 13 C 0.71 14.76 7.81 -86.92 -0.68 14.08 16 14 O -0.58 -14.39 14.24 5.28 0.08 -14.32 16 15 N -0.73 -15.41 4.85 -59.81 -0.29 -15.70 16 16 C 0.26 6.68 2.21 -69.08 -0.15 6.52 16 17 H 0.08 2.39 7.58 -51.93 -0.39 2.00 16 18 C -0.55 -14.18 8.46 -34.44 -0.29 -14.47 16 19 H 0.08 1.81 7.74 -52.48 -0.41 1.41 16 20 C 0.07 1.71 5.20 -17.82 -0.09 1.61 16 21 N -0.84 -23.21 9.50 55.43 0.53 -22.69 16 22 Si 0.91 20.12 29.54 -169.99 -5.02 15.10 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 C 0.42 10.99 2.81 37.16 0.10 11.09 16 27 F -0.21 -5.73 15.67 2.25 0.04 -5.69 16 28 F -0.14 -3.92 12.91 2.25 0.03 -3.89 16 29 F -0.21 -5.36 16.94 2.25 0.04 -5.32 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.04 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.04 0.33 7.96 -51.93 -0.41 -0.08 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.85 7.96 -51.93 -0.41 0.44 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.72 7.58 -51.93 -0.39 0.33 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.62 6.37 -51.93 -0.33 0.29 16 41 H 0.07 0.84 6.37 -51.93 -0.33 0.51 16 42 H 0.39 7.26 6.27 -40.82 -0.26 7.01 16 43 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 354.63 15.07 5.34 5.34 Total: -1.00 -32.55 354.63 -5.53 -38.07 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -5.71 Total: 5.57 kcal Atomic # 6 Polarization: 23.34 SS G_CDS: 0.67 Total: 24.01 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.25 Total: -48.75 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.67 Total: -24.45 kcal Atomic # 9 Polarization: -15.00 SS G_CDS: 0.10 Total: -14.89 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.55 -5.53 -38.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932888472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.390 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds