Wall clock time and date at job start Sat Apr 11 2020 05:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00410 * 2 1 4 4 H 1.08993 * 109.52389 * 29.87367 * 3 2 1 5 5 C 1.53096 * 109.52111 * 269.68738 * 3 2 1 6 6 O 1.42899 * 109.41652 * 182.48134 * 5 3 2 7 7 C 1.42913 * 114.09245 * 61.16063 * 6 5 3 8 8 C 1.53098 * 109.48621 * 298.88600 * 7 6 5 9 9 C 1.53170 * 109.52347 * 150.00179 * 3 2 1 10 10 H 1.09002 * 109.54849 * 56.93011 * 9 3 2 11 11 N 1.46500 * 109.54576 * 296.75538 * 9 3 2 12 12 C 1.46506 * 119.99600 * 300.17430 * 11 9 3 13 13 C 1.34773 * 120.00431 * 120.17889 * 11 9 3 14 14 O 1.21593 * 119.99894 * 359.97438 * 13 11 9 15 15 N 1.34777 * 120.00097 * 179.72742 * 13 11 9 16 16 C 1.46504 * 119.99854 * 180.27545 * 15 13 11 17 17 H 1.09001 * 109.47451 * 34.99522 * 16 15 13 18 18 C 1.50700 * 109.47198 * 154.99672 * 16 15 13 19 19 H 1.08005 * 119.99818 * 359.97438 * 18 16 15 20 20 C 1.37872 * 120.00334 * 179.97438 * 18 16 15 21 21 N 1.31521 * 119.99908 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 120.00358 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47327 * 59.99945 * 22 20 18 24 24 H 1.48496 * 109.47294 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47301 * 300.00294 * 22 20 18 26 26 C 1.52997 * 109.46930 * 274.99613 * 16 15 13 27 27 F 1.39898 * 109.47297 * 60.00052 * 26 16 15 28 28 F 1.39899 * 109.47209 * 180.02562 * 26 16 15 29 29 F 1.39909 * 109.47143 * 300.00304 * 26 16 15 30 30 H 1.08997 * 109.47088 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46186 * 299.99812 * 1 2 3 32 32 H 1.08995 * 109.47109 * 59.99505 * 1 2 3 33 33 H 1.08996 * 109.47841 * 302.47018 * 5 3 2 34 34 H 1.09001 * 109.48009 * 62.49912 * 5 3 2 35 35 H 1.08994 * 109.48152 * 58.82351 * 7 6 5 36 36 H 1.09002 * 109.47858 * 178.84745 * 7 6 5 37 37 H 1.09006 * 109.45856 * 297.61963 * 8 7 6 38 38 H 1.08998 * 109.60311 * 177.42412 * 8 7 6 39 39 H 1.08994 * 109.47014 * 270.00064 * 12 11 9 40 40 H 1.09003 * 109.47017 * 30.00282 * 12 11 9 41 41 H 1.09002 * 109.46900 * 149.99874 * 12 11 9 42 42 H 0.97000 * 119.99736 * 0.26819 * 15 13 11 43 43 H 0.96993 * 120.00125 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3448 2.0005 0.5117 5 6 2.2256 1.7695 -1.4429 6 8 2.8598 3.0501 -1.4404 7 6 4.1473 3.0623 -0.8204 8 6 4.0113 2.6492 0.6475 9 6 3.3607 1.2644 0.7218 10 1 4.0087 0.5310 0.2418 11 7 3.1558 0.8937 2.1242 12 6 2.3161 1.7283 2.9872 13 6 3.7397 -0.2149 2.6205 14 8 4.4364 -0.9077 1.9042 15 7 3.5556 -0.5529 3.9122 16 6 4.1954 -1.7547 4.4532 17 1 5.1710 -1.8886 3.9861 18 6 4.3679 -1.6046 5.9428 19 1 4.0348 -0.7039 6.4370 20 6 4.9511 -2.6171 6.6747 21 7 5.3572 -3.7138 6.0729 22 14 5.1643 -2.4314 8.5211 23 1 3.8349 -2.2488 9.1571 24 1 5.8129 -3.6495 9.0695 25 1 6.0153 -1.2478 8.8046 26 6 3.3187 -2.9742 4.1617 27 9 3.1584 -3.1135 2.7789 28 9 3.9292 -4.1218 4.6788 29 9 2.0663 -2.8023 4.7613 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 2.8581 1.0516 -1.9651 34 1 1.2630 1.8416 -1.9491 35 1 4.8050 2.3614 -1.3345 36 1 4.5691 4.0657 -0.8783 37 1 3.3877 3.3731 1.1721 38 1 4.9975 2.6136 1.1103 39 1 2.9317 2.4885 3.4678 40 1 1.5451 2.2112 2.3868 41 1 1.8466 1.1059 3.7490 42 1 2.9997 -0.0003 4.4836 43 1 5.7670 -4.4262 6.5878 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932888472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:25 Heat of formation + Delta-G solvation = -263.908691 kcal Electronic energy + Delta-G solvation = -32725.885716 eV Core-core repulsion = 27777.956589 eV Total energy + Delta-G solvation = -4947.929128 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.40150 -48.03510 -47.71689 -41.63380 -40.26715 -38.29666 -36.93230 -36.35007 -34.55323 -32.92290 -31.39090 -29.99045 -27.97270 -27.53617 -26.60029 -25.67388 -24.17344 -23.40728 -21.71958 -20.76689 -19.79921 -18.89793 -18.72607 -18.60483 -18.12543 -17.65152 -17.53511 -17.22887 -16.82006 -16.54602 -16.25085 -15.84365 -15.75739 -15.13266 -15.03078 -14.92408 -14.75292 -14.57537 -14.44809 -14.28818 -14.17194 -14.07038 -14.01622 -13.91023 -13.86371 -13.25505 -13.04236 -12.90144 -12.75063 -12.59986 -12.44713 -12.33277 -12.19799 -12.11969 -11.60295 -11.50603 -11.18227 -11.07796 -10.66787 -10.35491 -10.13882 -9.48945 -8.19759 -6.51331 1.46540 1.50116 1.56652 1.62648 2.14080 2.37267 2.52207 2.56815 2.95200 3.00616 3.02391 3.59261 3.77811 3.79709 3.88436 3.89778 3.93810 4.05089 4.16365 4.23451 4.30249 4.37366 4.49542 4.54618 4.60093 4.63863 4.71369 4.80219 4.81260 4.86199 4.89826 4.97430 5.10495 5.43979 5.47283 5.63094 5.66281 5.95305 6.00732 6.30575 6.53347 7.06019 7.19209 7.64340 8.72985 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018986 B = 0.003647 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.388145 B = 7674.957086 C = 8294.547064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.401 6.401 3 C 0.050 3.950 4 H 0.090 0.910 5 C 0.048 3.952 6 O -0.381 6.381 7 C 0.060 3.940 8 C -0.151 4.151 9 C 0.153 3.847 10 H 0.071 0.929 11 N -0.618 5.618 12 C 0.072 3.928 13 C 0.699 3.301 14 O -0.628 6.628 15 N -0.719 5.719 16 C 0.272 3.728 17 H 0.043 0.957 18 C -0.561 4.561 19 H 0.092 0.908 20 C 0.015 3.985 21 N -0.875 5.875 22 Si 0.986 3.014 23 H -0.265 1.265 24 H -0.285 1.285 25 H -0.262 1.262 26 C 0.412 3.588 27 F -0.220 7.220 28 F -0.151 7.151 29 F -0.204 7.204 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.116 0.884 35 H 0.052 0.948 36 H 0.128 0.872 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.408 0.592 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.547 15.882 -8.849 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C -0.009 4.009 4 H 0.108 0.892 5 C -0.030 4.030 6 O -0.299 6.299 7 C -0.016 4.016 8 C -0.190 4.190 9 C 0.048 3.952 10 H 0.090 0.910 11 N -0.354 5.354 12 C -0.070 4.070 13 C 0.400 3.600 14 O -0.509 6.509 15 N -0.374 5.374 16 C 0.164 3.836 17 H 0.061 0.939 18 C -0.597 4.597 19 H 0.110 0.890 20 C -0.191 4.191 21 N -0.509 5.509 22 Si 0.809 3.191 23 H -0.190 1.190 24 H -0.210 1.210 25 H -0.186 1.186 26 C 0.356 3.644 27 F -0.202 7.202 28 F -0.132 7.132 29 F -0.186 7.186 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.134 0.866 35 H 0.071 0.929 36 H 0.146 0.854 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.245 0.755 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.950 15.166 -9.409 19.538 hybrid contribution -0.252 -0.854 1.068 1.390 sum -8.202 14.312 -8.341 18.485 Atomic orbital electron populations 1.22968 0.79560 1.03297 1.01219 1.88053 1.21458 1.27487 1.95065 1.23239 0.95083 0.85539 0.97077 0.89227 1.23036 0.99608 0.85371 0.94953 1.87936 1.32874 1.29906 1.79229 1.22774 0.84512 1.04037 0.90327 1.22565 1.02482 0.94654 0.99300 1.21152 0.96055 0.97689 0.80284 0.91025 1.46884 1.52235 1.24941 1.11352 1.21957 0.95147 0.95211 0.94716 1.16151 0.80231 0.81449 0.82129 1.90858 1.45557 1.54974 1.59495 1.45117 1.54338 1.28377 1.09595 1.19156 0.89865 0.78085 0.96529 0.93945 1.21165 1.43682 1.05535 0.89348 0.88994 1.26025 0.94160 0.93968 1.04920 1.70542 1.36060 1.06474 1.37857 0.85182 0.78910 0.77881 0.77162 1.18965 1.21045 1.18600 1.23371 0.79734 0.89556 0.71739 1.93073 1.96085 1.96788 1.34209 1.93370 1.81373 1.53145 1.85352 1.92974 1.45654 1.95912 1.84058 0.90039 0.93166 0.91694 0.92942 0.86587 0.92915 0.85414 0.88606 0.90041 0.90483 0.88853 0.91441 0.75451 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.82 113.37 1.23 1.74 16 2 O -0.40 -11.59 10.28 -148.98 -1.53 -13.12 16 3 C 0.05 1.14 2.16 30.68 0.07 1.21 16 4 H 0.09 1.66 6.19 -2.39 -0.01 1.64 16 5 C 0.05 0.93 6.47 72.01 0.47 1.40 16 6 O -0.38 -7.21 10.77 -148.98 -1.60 -8.81 16 7 C 0.06 0.99 6.84 72.01 0.49 1.49 16 8 C -0.15 -2.91 5.47 30.69 0.17 -2.74 16 9 C 0.15 4.18 2.29 45.11 0.10 4.29 16 10 H 0.07 2.56 6.90 -2.39 -0.02 2.54 16 11 N -0.62 -19.03 2.69 -839.93 -2.26 -21.30 16 12 C 0.07 1.49 9.20 127.77 1.18 2.66 16 13 C 0.70 29.85 7.81 179.06 1.40 31.25 16 14 O -0.63 -32.88 14.24 -4.01 -0.06 -32.94 16 15 N -0.72 -30.81 4.85 -461.40 -2.24 -33.04 16 16 C 0.27 14.18 2.21 44.24 0.10 14.27 16 17 H 0.04 2.57 7.58 -2.39 -0.02 2.55 16 18 C -0.56 -28.72 8.46 25.60 0.22 -28.50 16 19 H 0.09 4.29 7.74 -2.91 -0.02 4.27 16 20 C 0.01 0.76 5.20 84.65 0.44 1.20 16 21 N -0.88 -49.34 9.50 21.45 0.20 -49.13 16 22 Si 0.99 40.60 29.54 68.60 2.03 42.63 16 23 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 24 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 26 C 0.41 22.34 2.81 71.98 0.20 22.55 16 27 F -0.22 -12.17 15.67 44.97 0.70 -11.46 16 28 F -0.15 -8.81 12.91 44.97 0.58 -8.23 16 29 F -0.20 -10.37 16.94 44.97 0.76 -9.60 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 0.89 8.09 -2.39 -0.02 0.87 16 32 H 0.06 0.94 7.96 -2.39 -0.02 0.92 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.12 1.76 7.96 -2.39 -0.02 1.74 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.10 1.47 7.58 -2.38 -0.02 1.46 16 38 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 1.42 6.37 -2.39 -0.02 1.41 16 41 H 0.07 1.46 6.37 -2.39 -0.02 1.44 16 42 H 0.41 14.69 6.27 -92.71 -0.58 14.11 16 43 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -73.04 354.63 3.11 -69.93 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.47 Total: 24.28 kcal Atomic # 6 Polarization: 44.76 SS G_CDS: 6.05 Total: 50.81 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -4.30 Total: -103.48 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -3.19 Total: -54.88 kcal Atomic # 9 Polarization: -31.34 SS G_CDS: 2.05 Total: -29.30 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -73.04 3.11 -69.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932888472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.980 kcal (2) G-P(sol) polarization free energy of solvation -73.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -263.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds