Wall clock time and date at job start Sat Apr 11 2020 05:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00039 * 2 1 4 4 H 1.09000 * 109.52469 * 30.13133 * 3 2 1 5 5 C 1.53096 * 109.52220 * 270.00228 * 3 2 1 6 6 O 1.42903 * 109.42185 * 182.41884 * 5 3 2 7 7 C 1.42925 * 114.08820 * 61.15220 * 6 5 3 8 8 C 1.53097 * 109.41874 * 298.85034 * 7 6 5 9 9 C 1.53177 * 109.57157 * 150.28725 * 3 2 1 10 10 H 1.09005 * 109.54533 * 296.87121 * 9 3 2 11 11 N 1.46493 * 109.54806 * 57.04999 * 9 3 2 12 12 C 1.46501 * 119.99665 * 4.53858 * 11 9 3 13 13 C 1.34780 * 120.00309 * 184.53724 * 11 9 3 14 14 O 1.21582 * 119.99731 * 359.97438 * 13 11 9 15 15 N 1.34774 * 119.99678 * 180.02562 * 13 11 9 16 16 C 1.46509 * 119.99619 * 180.02562 * 15 13 11 17 17 H 1.08998 * 109.47006 * 324.99739 * 16 15 13 18 18 C 1.50694 * 109.46905 * 204.99821 * 16 15 13 19 19 H 1.08002 * 120.00337 * 359.97438 * 18 16 15 20 20 C 1.37879 * 119.99906 * 179.97438 * 18 16 15 21 21 N 1.31508 * 119.99847 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 120.00002 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47480 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46938 * 120.00224 * 22 20 18 25 25 H 1.48500 * 109.47225 * 240.00014 * 22 20 18 26 26 C 1.52996 * 109.47051 * 84.99876 * 16 15 13 27 27 F 1.39897 * 109.47403 * 59.99992 * 26 16 15 28 28 F 1.39899 * 109.47316 * 180.02562 * 26 16 15 29 29 F 1.39901 * 109.46994 * 299.99901 * 26 16 15 30 30 H 1.08995 * 109.47222 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46725 * 299.99561 * 1 2 3 32 32 H 1.08996 * 109.47065 * 59.99702 * 1 2 3 33 33 H 1.08992 * 109.48219 * 302.40182 * 5 3 2 34 34 H 1.08994 * 109.48151 * 62.43563 * 5 3 2 35 35 H 1.09000 * 109.47759 * 178.86715 * 7 6 5 36 36 H 1.08994 * 109.48703 * 58.83633 * 7 6 5 37 37 H 1.08998 * 109.52373 * 297.70097 * 8 7 6 38 38 H 1.09008 * 109.57060 * 177.54443 * 8 7 6 39 39 H 1.09000 * 109.46983 * 95.40403 * 12 11 9 40 40 H 1.09002 * 109.47342 * 215.40260 * 12 11 9 41 41 H 1.08998 * 109.47262 * 335.40121 * 12 11 9 42 42 H 0.96996 * 120.00554 * 359.97438 * 15 13 11 43 43 H 0.97002 * 119.99960 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3467 1.9996 0.5157 5 6 2.2183 1.7728 -1.4429 6 8 2.8510 3.0541 -1.4408 7 6 4.1415 3.0664 -0.8267 8 6 4.0107 2.6509 0.6410 9 6 3.3641 1.2643 0.7154 10 1 3.2169 0.9846 1.7586 11 7 4.2336 0.2824 0.0628 12 6 3.7833 -0.4020 -1.1517 13 6 5.4479 0.0087 0.5797 14 8 5.8218 0.5771 1.5874 15 7 6.2480 -0.8942 -0.0210 16 6 7.5677 -1.1921 0.5412 17 1 7.9924 -0.2853 0.9718 18 6 8.4744 -1.7030 -0.5487 19 1 8.1045 -1.7968 -1.5591 20 6 9.7761 -2.0506 -0.2561 21 7 10.2264 -1.9368 0.9743 22 14 10.8998 -2.6845 -1.6070 23 1 10.1577 -2.7186 -2.8928 24 1 12.0737 -1.7844 -1.7373 25 1 11.3615 -4.0538 -1.2649 26 6 7.4293 -2.2575 1.6306 27 9 6.8843 -3.4214 1.0780 28 9 8.6894 -2.5416 2.1679 29 9 6.5876 -1.7832 2.6424 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 2.8491 1.0568 -1.9696 34 1 1.2532 1.8449 -1.9444 35 1 4.5618 4.0704 -0.8842 36 1 4.7976 2.3674 -1.3452 37 1 3.3876 3.3722 1.1696 38 1 4.9987 2.6172 1.1004 39 1 4.1658 0.1226 -2.0273 40 1 4.1555 -1.4265 -1.1507 41 1 2.6938 -0.4113 -1.1808 42 1 5.9499 -1.3474 -0.8251 43 1 11.1423 -2.1810 1.1801 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932888473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:27 Heat of formation + Delta-G solvation = -216.642324 kcal Electronic energy + Delta-G solvation = -33000.236735 eV Core-core repulsion = 28054.357231 eV Total energy + Delta-G solvation = -4945.879504 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.28022 -45.93143 -45.55344 -40.92874 -38.81834 -37.52857 -35.27895 -34.54919 -32.84235 -31.73722 -30.53217 -28.05268 -27.28213 -26.87112 -24.56931 -24.19288 -23.22609 -21.85542 -20.47889 -19.33633 -17.89421 -17.39497 -16.91962 -16.71730 -16.64572 -16.57025 -16.07040 -15.97546 -15.59512 -15.25933 -14.93401 -14.65236 -14.60636 -13.93769 -13.47717 -13.27814 -13.17569 -12.95557 -12.83062 -12.56860 -12.39320 -12.36073 -12.32762 -12.27878 -12.07627 -11.91829 -11.83132 -11.73311 -11.50147 -11.15027 -10.99158 -10.84802 -10.77083 -10.44505 -10.34302 -10.12874 -9.61351 -9.37409 -9.26676 -8.70803 -8.43705 -8.05119 -6.21542 -4.44986 2.99043 3.18795 3.25561 3.27746 3.30908 3.77852 3.86621 4.19170 4.35482 4.55269 4.59955 4.71991 4.79034 4.95598 4.96477 4.99660 5.02767 5.07737 5.27104 5.34430 5.40551 5.50254 5.52817 5.61375 5.77624 5.88291 5.88681 5.91956 5.94296 6.05408 6.18122 6.26768 6.64107 6.76978 6.96688 7.10623 7.26859 7.39481 7.62946 7.67647 8.51978 8.64437 9.17012 9.28175 10.70135 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016945 B = 0.003792 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.002710 B = 7382.555338 C = 7835.736833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.367 6.367 3 C 0.050 3.950 4 H 0.083 0.917 5 C 0.015 3.985 6 O -0.379 6.379 7 C 0.061 3.939 8 C -0.169 4.169 9 C 0.175 3.825 10 H 0.084 0.916 11 N -0.627 5.627 12 C 0.055 3.945 13 C 0.703 3.297 14 O -0.583 6.583 15 N -0.725 5.725 16 C 0.262 3.738 17 H 0.085 0.915 18 C -0.550 4.550 19 H 0.076 0.924 20 C 0.065 3.935 21 N -0.839 5.839 22 Si 0.915 3.085 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.416 3.584 27 F -0.211 7.211 28 F -0.138 7.138 29 F -0.216 7.216 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.111 0.889 42 H 0.394 0.606 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.495 5.672 -4.917 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.286 6.286 3 C -0.008 4.008 4 H 0.101 0.899 5 C -0.062 4.062 6 O -0.298 6.298 7 C -0.015 4.015 8 C -0.208 4.208 9 C 0.071 3.929 10 H 0.102 0.898 11 N -0.366 5.366 12 C -0.088 4.088 13 C 0.404 3.596 14 O -0.460 6.460 15 N -0.378 5.378 16 C 0.155 3.845 17 H 0.102 0.898 18 C -0.587 4.587 19 H 0.095 0.905 20 C -0.144 4.144 21 N -0.473 5.473 22 Si 0.741 3.259 23 H -0.194 1.194 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.359 3.641 27 F -0.193 7.193 28 F -0.119 7.119 29 F -0.198 7.198 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.122 0.878 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.128 0.872 42 H 0.229 0.771 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.994 6.032 -4.086 17.575 hybrid contribution 0.279 -0.942 -0.604 1.153 sum -15.715 5.090 -4.690 17.171 Atomic orbital electron populations 1.22891 0.81266 1.03043 1.00093 1.88017 1.19569 1.26603 1.94397 1.23015 0.94748 0.85600 0.97447 0.89874 1.23754 0.99370 0.87135 0.95893 1.87917 1.32499 1.29707 1.79652 1.22607 0.84356 1.02262 0.92314 1.22651 1.04520 0.95630 0.97985 1.20878 0.86537 0.88377 0.97156 0.89772 1.46883 1.16178 1.44423 1.29110 1.22505 1.03476 0.96609 0.86175 1.15950 0.79985 0.80653 0.83010 1.90880 1.74245 1.55112 1.25769 1.45400 1.18287 1.43325 1.30804 1.19594 0.79483 0.93805 0.91569 0.89781 1.20905 0.95478 1.47947 0.94402 0.90549 1.25074 0.98197 0.94918 0.96189 1.70418 1.16173 1.43419 1.17251 0.86169 0.80063 0.78511 0.81127 1.19444 1.20587 1.20593 1.23172 0.73813 0.83515 0.83560 1.92980 1.86704 1.53570 1.86003 1.93397 1.37299 1.93987 1.87243 1.93073 1.73537 1.88463 1.64763 0.89373 0.93789 0.93917 0.89597 0.89151 0.88653 0.92537 0.90462 0.87765 0.93388 0.91854 0.87176 0.77080 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.82 101.05 1.09 1.26 16 2 O -0.37 -3.89 7.59 -35.23 -0.27 -4.16 16 3 C 0.05 0.53 2.39 -26.59 -0.06 0.47 16 4 H 0.08 0.77 7.79 -51.93 -0.40 0.37 16 5 C 0.02 0.15 5.91 37.21 0.22 0.37 16 6 O -0.38 -4.54 10.77 -35.23 -0.38 -4.92 16 7 C 0.06 0.75 6.68 37.21 0.25 1.00 16 8 C -0.17 -2.22 5.54 -26.59 -0.15 -2.37 16 9 C 0.18 2.42 2.57 -67.75 -0.17 2.25 16 10 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 11 N -0.63 -9.86 2.38 -179.46 -0.43 -10.28 16 12 C 0.05 0.69 7.72 59.85 0.46 1.15 16 13 C 0.70 14.34 7.53 -86.92 -0.65 13.68 16 14 O -0.58 -13.81 13.38 5.29 0.07 -13.74 16 15 N -0.72 -15.28 4.85 -59.81 -0.29 -15.57 16 16 C 0.26 6.59 2.21 -69.08 -0.15 6.44 16 17 H 0.08 2.37 7.58 -51.93 -0.39 1.97 16 18 C -0.55 -14.09 8.46 -34.44 -0.29 -14.38 16 19 H 0.08 1.86 7.74 -52.49 -0.41 1.45 16 20 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 21 N -0.84 -23.10 9.50 55.43 0.53 -22.58 16 22 Si 0.91 20.13 29.54 -169.99 -5.02 15.11 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 C 0.42 10.90 2.81 37.16 0.10 11.00 16 27 F -0.21 -5.33 16.94 2.25 0.04 -5.29 16 28 F -0.14 -3.88 12.91 2.25 0.03 -3.85 16 29 F -0.22 -5.69 15.68 2.25 0.04 -5.65 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.29 8.09 -51.93 -0.42 -0.13 16 32 H 0.04 0.25 7.93 -51.93 -0.41 -0.17 16 33 H 0.09 0.89 3.76 -51.93 -0.20 0.69 16 34 H 0.09 0.74 7.93 -51.93 -0.41 0.33 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.77 7.75 -51.93 -0.40 0.36 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 1.67 6.49 -51.92 -0.34 1.33 16 39 H 0.05 0.55 6.98 -51.93 -0.36 0.19 16 40 H 0.06 0.82 6.66 -51.93 -0.35 0.48 16 41 H 0.11 1.24 3.44 -52.16 -0.18 1.06 16 42 H 0.39 7.36 6.39 -40.82 -0.26 7.10 16 43 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -31.15 342.10 -5.33 -36.48 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.36 Total: 6.83 kcal Atomic # 6 Polarization: 21.93 SS G_CDS: 0.55 Total: 22.48 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.19 Total: -48.44 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.58 Total: -22.82 kcal Atomic # 9 Polarization: -14.90 SS G_CDS: 0.10 Total: -14.80 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.15 -5.33 -36.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932888473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.162 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds