Wall clock time and date at job start Sat Apr 11 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47394 * 2 1 4 4 C 1.42900 * 113.99807 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46970 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.51268 * 54.99508 * 5 4 3 7 7 C 1.53297 * 109.51089 * 175.09887 * 5 4 3 8 8 N 1.47170 * 108.37090 * 172.17403 * 7 5 4 9 9 C 1.34773 * 120.94308 * 129.50605 * 8 7 5 10 10 O 1.21592 * 119.99853 * 354.75367 * 9 8 7 11 11 N 1.34774 * 120.00220 * 174.76485 * 9 8 7 12 12 C 1.46506 * 119.99950 * 184.86347 * 11 9 8 13 13 H 1.08993 * 109.47360 * 34.99907 * 12 11 9 14 14 C 1.50702 * 109.47009 * 155.00331 * 12 11 9 15 15 H 1.07994 * 120.00214 * 114.85183 * 14 12 11 16 16 C 1.37879 * 119.99705 * 294.85148 * 14 12 11 17 17 N 1.31513 * 120.00108 * 184.90447 * 16 14 12 18 18 Si 1.86802 * 120.00145 * 4.90746 * 16 14 12 19 19 H 1.48501 * 109.47369 * 94.91228 * 18 16 14 20 20 H 1.48499 * 109.47230 * 214.91760 * 18 16 14 21 21 H 1.48501 * 109.46828 * 334.91300 * 18 16 14 22 22 C 1.52996 * 109.47094 * 274.99722 * 12 11 9 23 23 F 1.39908 * 109.47114 * 65.02097 * 22 12 11 24 24 F 1.39900 * 109.47367 * 185.02008 * 22 12 11 25 25 F 1.39904 * 109.47753 * 305.02211 * 22 12 11 26 26 C 1.47155 * 118.07674 * 309.54204 * 8 7 5 27 27 C 1.53299 * 108.38130 * 50.50819 * 26 8 7 28 28 O 1.42959 * 109.50923 * 294.89483 * 5 4 3 29 29 H 1.08997 * 109.47391 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46558 * 299.99798 * 1 2 3 31 31 H 1.08999 * 109.46860 * 59.99962 * 1 2 3 32 32 H 1.09007 * 109.47017 * 239.99766 * 2 1 3 33 33 H 1.09007 * 109.47320 * 120.00475 * 2 1 3 34 34 H 1.09001 * 109.47322 * 299.99747 * 4 3 2 35 35 H 1.08993 * 109.47550 * 59.99999 * 4 3 2 36 36 H 1.08993 * 109.68285 * 291.94623 * 7 5 4 37 37 H 1.09001 * 109.68315 * 52.50640 * 7 5 4 38 38 H 0.97003 * 120.00116 * 4.86281 * 11 9 8 39 39 H 0.97002 * 119.99922 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.68365 * 290.78465 * 26 8 7 41 41 H 1.09002 * 109.68313 * 170.22641 * 26 8 7 42 42 H 1.09005 * 109.51230 * 187.77344 * 27 26 8 43 43 H 1.08996 * 109.55428 * 67.64369 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 1 3.3504 3.4415 0.8422 7 6 5.3486 3.0616 0.1229 8 7 5.7165 4.4737 -0.0680 9 6 6.5165 5.1066 0.8128 10 8 6.8676 4.5412 1.8304 11 7 6.9271 6.3663 0.5659 12 6 7.8810 7.0160 1.4684 13 1 8.5849 6.2752 1.8475 14 6 8.6325 8.0860 0.7192 15 1 8.5118 9.1235 0.9937 16 6 9.4742 7.7404 -0.3167 17 7 10.2031 8.6621 -0.9072 18 14 9.5792 5.9629 -0.8816 19 1 8.6582 5.7524 -2.0273 20 1 10.9704 5.6586 -1.3023 21 1 9.1924 5.0648 0.2360 22 6 7.1259 7.6480 2.6393 23 9 6.5215 6.6425 3.4017 24 9 8.0219 8.3650 3.4395 25 9 6.1436 8.5144 2.1477 26 6 5.1851 5.1744 -1.2478 27 6 3.6698 4.9482 -1.3026 28 8 3.4001 3.5466 -1.2216 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8341 0.9763 0.8892 35 1 3.8333 0.9766 -0.8907 36 1 5.6653 2.7293 1.1115 37 1 5.8292 2.4511 -0.6416 38 1 6.5911 6.8428 -0.2093 39 1 10.7950 8.4190 -1.6362 40 1 5.6485 4.7768 -2.1507 41 1 5.3942 6.2411 -1.1664 42 1 3.2767 5.3411 -2.2403 43 1 3.1942 5.4594 -0.4657 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932894290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:46 Heat of formation + Delta-G solvation = -263.537251 kcal Electronic energy + Delta-G solvation = -31785.470377 eV Core-core repulsion = 26837.557356 eV Total energy + Delta-G solvation = -4947.913021 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.06864 -46.57405 -46.55977 -40.35093 -38.75056 -37.77100 -35.08575 -34.52228 -32.97015 -32.41155 -31.04416 -29.27556 -28.12880 -25.56996 -25.02448 -23.39594 -23.03138 -21.80213 -21.05696 -19.54795 -18.60565 -17.61035 -17.54561 -17.14988 -16.91470 -16.80628 -16.44970 -15.94178 -15.72216 -15.42560 -15.08650 -14.94174 -14.36024 -14.26782 -13.63323 -13.54536 -13.46084 -13.40019 -13.21797 -13.07234 -13.02421 -12.83904 -12.78447 -12.75858 -12.67395 -12.22389 -11.78767 -11.77020 -11.68461 -11.57420 -11.18892 -11.17992 -10.76008 -10.67234 -10.19596 -10.15307 -9.88789 -9.83836 -9.69397 -9.05845 -8.64754 -8.25059 -6.55055 -4.69199 2.72545 3.05355 3.16883 3.28075 3.36162 3.53079 3.58856 3.89579 4.08824 4.16172 4.68114 4.72086 4.76311 4.86326 4.91224 4.93337 4.98502 5.05236 5.08525 5.11174 5.14672 5.20276 5.25371 5.30795 5.37351 5.43844 5.54780 5.62130 5.68279 5.70132 5.83019 5.88304 6.29600 6.52199 6.85669 6.93621 7.04330 7.07117 7.24566 7.85873 8.42343 8.48582 8.97800 9.01427 10.52892 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015952 B = 0.003452 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.865237 B = 8108.711172 C = 8945.101413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.381 6.381 4 C 0.074 3.926 5 C 0.080 3.920 6 H 0.073 0.927 7 C 0.105 3.895 8 N -0.638 5.638 9 C 0.699 3.301 10 O -0.582 6.582 11 N -0.731 5.731 12 C 0.222 3.778 13 H 0.091 0.909 14 C -0.536 4.536 15 H 0.096 0.904 16 C 0.096 3.904 17 N -0.861 5.861 18 Si 0.880 3.120 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.254 1.254 22 C 0.441 3.559 23 F -0.191 7.191 24 F -0.184 7.184 25 F -0.192 7.192 26 C 0.073 3.927 27 C 0.051 3.949 28 O -0.369 6.369 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.395 0.605 39 H 0.275 0.725 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.894 -12.953 -2.188 19.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.003 4.003 5 C 0.021 3.979 6 H 0.091 0.909 7 C -0.019 4.019 8 N -0.378 5.378 9 C 0.401 3.599 10 O -0.459 6.459 11 N -0.389 5.389 12 C 0.118 3.882 13 H 0.108 0.892 14 C -0.574 4.574 15 H 0.114 0.886 16 C -0.114 4.114 17 N -0.494 5.494 18 Si 0.706 3.294 19 H -0.199 1.199 20 H -0.214 1.214 21 H -0.178 1.178 22 C 0.385 3.615 23 F -0.173 7.173 24 F -0.166 7.166 25 F -0.174 7.174 26 C -0.051 4.051 27 C -0.026 4.026 28 O -0.288 6.288 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.233 0.767 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.674 -13.218 -1.685 19.093 hybrid contribution 0.155 -0.492 -0.514 0.728 sum -13.518 -13.710 -2.199 19.379 Atomic orbital electron populations 1.21732 0.93750 1.02099 1.03238 1.22463 0.95670 0.83881 1.00006 1.87946 1.20428 1.26190 1.95416 1.22390 0.82070 0.94648 1.01206 1.22462 0.93773 0.93122 0.88511 0.90938 1.21919 0.93563 0.82113 1.04289 1.47324 1.52825 1.11779 1.25866 1.16271 0.78641 0.82370 0.82634 1.90883 1.61431 1.67172 1.26460 1.47086 1.48211 1.12882 1.30754 1.20206 0.86690 0.95114 0.86173 0.89155 1.20832 1.24815 0.93750 1.18007 0.88635 1.24935 0.93318 0.97978 0.95151 1.69877 1.23308 1.33901 1.22292 0.86784 0.77665 0.84794 0.80117 1.19940 1.21411 1.17815 1.21533 0.77981 0.76516 0.85484 1.93160 1.84801 1.60818 1.78479 1.93108 1.68154 1.79394 1.75935 1.93072 1.64704 1.71731 1.87848 1.22365 0.95043 0.98544 0.89099 1.22964 0.94084 0.82522 1.03076 1.87980 1.81674 1.21751 1.37366 0.91199 0.91857 0.91780 0.93399 0.93450 0.91436 0.92193 0.87674 0.91126 0.76676 0.91534 0.90585 0.88899 0.87520 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.48 6.66 37.16 0.25 0.73 16 3 O -0.38 -4.47 10.31 -39.87 -0.41 -4.88 16 4 C 0.07 0.78 5.60 37.16 0.21 0.99 16 5 C 0.08 1.01 3.06 -26.58 -0.08 0.93 16 6 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 7 C 0.11 1.45 5.94 -3.52 -0.02 1.43 16 8 N -0.64 -10.41 3.02 -177.99 -0.54 -10.95 16 9 C 0.70 14.13 7.13 -86.92 -0.62 13.51 16 10 O -0.58 -13.43 14.18 5.28 0.07 -13.36 16 11 N -0.73 -15.04 2.78 -59.81 -0.17 -15.20 16 12 C 0.22 5.10 1.36 -69.08 -0.09 5.01 16 13 H 0.09 2.22 6.56 -51.93 -0.34 1.88 16 14 C -0.54 -13.59 8.65 -34.44 -0.30 -13.89 16 15 H 0.10 2.64 7.95 -52.49 -0.42 2.22 16 16 C 0.10 2.46 5.47 -17.82 -0.10 2.37 16 17 N -0.86 -23.44 13.96 55.43 0.77 -22.67 16 18 Si 0.88 20.01 26.03 -169.99 -4.43 15.59 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.25 -6.01 5.80 56.52 0.33 -5.68 16 22 C 0.44 9.80 2.79 37.16 0.10 9.91 16 23 F -0.19 -4.28 15.63 2.25 0.04 -4.24 16 24 F -0.18 -4.14 16.86 2.25 0.04 -4.10 16 25 F -0.19 -4.13 16.97 2.25 0.04 -4.09 16 26 C 0.07 0.97 6.57 -3.53 -0.02 0.95 16 27 C 0.05 0.59 6.99 37.31 0.26 0.85 16 28 O -0.37 -4.88 10.35 -39.87 -0.41 -5.29 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.11 1.53 7.06 -51.93 -0.37 1.17 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.39 7.43 6.14 -40.82 -0.25 7.18 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 1.19 5.78 -51.93 -0.30 0.89 16 42 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 360.11 15.07 5.43 5.43 Total: -1.00 -30.97 360.11 -5.56 -36.53 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.96 Total: 5.18 kcal Atomic # 6 Polarization: 22.10 SS G_CDS: -0.03 Total: 22.07 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.07 Total: -48.82 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.75 Total: -23.53 kcal Atomic # 9 Polarization: -12.54 SS G_CDS: 0.11 Total: -12.43 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.43 Total: 15.59 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.97 -5.56 -36.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932894290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -227.009 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -257.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -263.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds