Wall clock time and date at job start Sat Apr 11 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47394 * 2 1 4 4 C 1.42900 * 113.99807 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46970 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.51268 * 54.99508 * 5 4 3 7 7 C 1.53297 * 109.51089 * 175.09887 * 5 4 3 8 8 N 1.47170 * 108.37090 * 172.17403 * 7 5 4 9 9 C 1.34773 * 120.94308 * 129.50605 * 8 7 5 10 10 O 1.21592 * 119.99853 * 354.75367 * 9 8 7 11 11 N 1.34774 * 120.00220 * 174.76485 * 9 8 7 12 12 C 1.46506 * 119.99950 * 184.86347 * 11 9 8 13 13 H 1.08993 * 109.47360 * 34.99907 * 12 11 9 14 14 C 1.50702 * 109.47009 * 155.00331 * 12 11 9 15 15 H 1.07994 * 120.00214 * 114.85183 * 14 12 11 16 16 C 1.37879 * 119.99705 * 294.85148 * 14 12 11 17 17 N 1.31513 * 120.00108 * 184.90447 * 16 14 12 18 18 Si 1.86802 * 120.00145 * 4.90746 * 16 14 12 19 19 H 1.48501 * 109.47369 * 94.91228 * 18 16 14 20 20 H 1.48499 * 109.47230 * 214.91760 * 18 16 14 21 21 H 1.48501 * 109.46828 * 334.91300 * 18 16 14 22 22 C 1.52996 * 109.47094 * 274.99722 * 12 11 9 23 23 F 1.39908 * 109.47114 * 65.02097 * 22 12 11 24 24 F 1.39900 * 109.47367 * 185.02008 * 22 12 11 25 25 F 1.39904 * 109.47753 * 305.02211 * 22 12 11 26 26 C 1.47155 * 118.07674 * 309.54204 * 8 7 5 27 27 C 1.53299 * 108.38130 * 50.50819 * 26 8 7 28 28 O 1.42959 * 109.50923 * 294.89483 * 5 4 3 29 29 H 1.08997 * 109.47391 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46558 * 299.99798 * 1 2 3 31 31 H 1.08999 * 109.46860 * 59.99962 * 1 2 3 32 32 H 1.09007 * 109.47017 * 239.99766 * 2 1 3 33 33 H 1.09007 * 109.47320 * 120.00475 * 2 1 3 34 34 H 1.09001 * 109.47322 * 299.99747 * 4 3 2 35 35 H 1.08993 * 109.47550 * 59.99999 * 4 3 2 36 36 H 1.08993 * 109.68285 * 291.94623 * 7 5 4 37 37 H 1.09001 * 109.68315 * 52.50640 * 7 5 4 38 38 H 0.97003 * 120.00116 * 4.86281 * 11 9 8 39 39 H 0.97002 * 119.99922 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.68365 * 290.78465 * 26 8 7 41 41 H 1.09002 * 109.68313 * 170.22641 * 26 8 7 42 42 H 1.09005 * 109.51230 * 187.77344 * 27 26 8 43 43 H 1.08996 * 109.55428 * 67.64369 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 1 3.3504 3.4415 0.8422 7 6 5.3486 3.0616 0.1229 8 7 5.7165 4.4737 -0.0680 9 6 6.5165 5.1066 0.8128 10 8 6.8676 4.5412 1.8304 11 7 6.9271 6.3663 0.5659 12 6 7.8810 7.0160 1.4684 13 1 8.5849 6.2752 1.8475 14 6 8.6325 8.0860 0.7192 15 1 8.5118 9.1235 0.9937 16 6 9.4742 7.7404 -0.3167 17 7 10.2031 8.6621 -0.9072 18 14 9.5792 5.9629 -0.8816 19 1 8.6582 5.7524 -2.0273 20 1 10.9704 5.6586 -1.3023 21 1 9.1924 5.0648 0.2360 22 6 7.1259 7.6480 2.6393 23 9 6.5215 6.6425 3.4017 24 9 8.0219 8.3650 3.4395 25 9 6.1436 8.5144 2.1477 26 6 5.1851 5.1744 -1.2478 27 6 3.6698 4.9482 -1.3026 28 8 3.4001 3.5466 -1.2216 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8341 0.9763 0.8892 35 1 3.8333 0.9766 -0.8907 36 1 5.6653 2.7293 1.1115 37 1 5.8292 2.4511 -0.6416 38 1 6.5911 6.8428 -0.2093 39 1 10.7950 8.4190 -1.6362 40 1 5.6485 4.7768 -2.1507 41 1 5.3942 6.2411 -1.1664 42 1 3.2767 5.3411 -2.2403 43 1 3.1942 5.4594 -0.4657 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932894290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:46 Heat of formation + Delta-G solvation = -284.485839 kcal Electronic energy + Delta-G solvation = -31786.378776 eV Core-core repulsion = 26837.557356 eV Total energy + Delta-G solvation = -4948.821420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.88716 -48.38818 -48.37652 -41.68011 -39.93775 -38.65869 -36.82131 -35.85316 -34.50111 -33.68496 -31.82704 -30.93728 -29.23524 -26.97295 -26.65795 -24.44855 -23.65627 -23.34935 -22.40015 -21.02272 -20.25113 -19.34648 -19.21025 -18.67059 -18.36378 -18.01924 -17.72843 -17.23469 -16.67051 -16.56157 -16.43310 -16.09746 -15.84272 -15.55688 -15.29098 -15.25045 -14.87557 -14.84103 -14.70102 -14.59027 -14.56603 -14.49677 -14.41334 -14.15520 -13.59750 -13.51210 -13.15803 -12.96343 -12.77288 -12.55155 -12.44907 -12.27478 -12.05174 -11.99404 -11.87205 -11.79546 -11.35914 -11.18280 -10.99427 -10.56895 -10.29996 -9.57521 -8.54564 -6.73445 1.21244 1.33294 1.38715 1.45660 1.85536 2.11696 2.23087 2.54152 2.58818 2.73433 3.01735 3.20054 3.36188 3.56816 3.70334 3.85682 3.91085 3.95589 4.11505 4.18351 4.20065 4.34853 4.38606 4.46203 4.47290 4.52270 4.57523 4.68624 4.75711 4.85367 4.91494 4.93655 5.05104 5.27727 5.29752 5.36534 5.72777 5.92257 6.04925 6.25985 6.41486 6.86123 6.97887 7.43078 8.57406 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015952 B = 0.003452 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.865237 B = 8108.711172 C = 8945.101413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.407 6.407 4 C 0.076 3.924 5 C 0.086 3.914 6 H 0.056 0.944 7 C 0.104 3.896 8 N -0.636 5.636 9 C 0.696 3.304 10 O -0.614 6.614 11 N -0.729 5.729 12 C 0.233 3.767 13 H 0.076 0.924 14 C -0.539 4.539 15 H 0.065 0.935 16 C 0.061 3.939 17 N -0.900 5.900 18 Si 0.937 3.063 19 H -0.249 1.249 20 H -0.290 1.290 21 H -0.268 1.268 22 C 0.443 3.557 23 F -0.190 7.190 24 F -0.187 7.187 25 F -0.186 7.186 26 C 0.067 3.933 27 C 0.054 3.946 28 O -0.377 6.377 29 H 0.091 0.909 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.405 0.595 39 H 0.280 0.720 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.137 0.863 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.173 -14.858 -3.487 21.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.327 6.327 4 C -0.001 4.001 5 C 0.027 3.973 6 H 0.075 0.925 7 C -0.020 4.020 8 N -0.374 5.374 9 C 0.398 3.602 10 O -0.495 6.495 11 N -0.388 5.388 12 C 0.127 3.873 13 H 0.094 0.906 14 C -0.577 4.577 15 H 0.084 0.916 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.761 3.239 19 H -0.173 1.173 20 H -0.217 1.217 21 H -0.192 1.192 22 C 0.388 3.612 23 F -0.171 7.171 24 F -0.168 7.168 25 F -0.168 7.168 26 C -0.056 4.056 27 C -0.023 4.023 28 O -0.296 6.296 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.245 0.755 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.155 0.845 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.002 -15.132 -3.029 21.523 hybrid contribution 0.481 0.103 -0.070 0.497 sum -14.522 -15.029 -3.099 21.127 Atomic orbital electron populations 1.21761 0.93124 1.03333 1.02502 1.22684 0.96259 0.82671 1.01078 1.87904 1.20899 1.28224 1.95643 1.22409 0.81958 0.93206 1.02552 1.22393 0.92547 0.94449 0.87883 0.92550 1.22086 0.94675 0.80772 1.04417 1.47390 1.51546 1.12749 1.25751 1.16281 0.79043 0.81939 0.82893 1.90860 1.62806 1.67727 1.28058 1.46581 1.48042 1.13428 1.30766 1.19798 0.86999 0.94139 0.86339 0.90609 1.20730 1.25692 0.92912 1.18354 0.91639 1.25500 0.92820 1.01107 0.95070 1.69952 1.24452 1.35756 1.23327 0.85902 0.77854 0.80237 0.79861 1.17342 1.21688 1.19239 1.21406 0.78026 0.76534 0.85283 1.93163 1.84744 1.60814 1.78415 1.93102 1.68304 1.79449 1.75979 1.93079 1.64411 1.71535 1.87775 1.22639 0.96234 0.98522 0.88188 1.23072 0.92790 0.81953 1.04481 1.87985 1.81653 1.22470 1.37459 0.89004 0.92565 0.92516 0.92348 0.92285 0.89880 0.91005 0.88707 0.89212 0.75521 0.91049 0.89148 0.88662 0.84537 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 71.98 0.74 -1.18 16 2 C 0.05 0.73 6.66 71.98 0.48 1.21 16 3 O -0.41 -8.83 10.31 -144.55 -1.49 -10.32 16 4 C 0.08 1.43 5.60 71.98 0.40 1.83 16 5 C 0.09 2.01 3.06 30.70 0.09 2.10 16 6 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 7 C 0.10 2.66 5.94 86.35 0.51 3.18 16 8 N -0.64 -19.52 3.02 -835.28 -2.52 -22.04 16 9 C 0.70 27.34 7.13 179.06 1.28 28.62 16 10 O -0.61 -28.03 14.18 -4.01 -0.06 -28.08 16 11 N -0.73 -29.27 2.78 -461.41 -1.28 -30.55 16 12 C 0.23 10.68 1.36 44.24 0.06 10.74 16 13 H 0.08 3.74 6.56 -2.39 -0.02 3.73 16 14 C -0.54 -27.57 8.65 25.60 0.22 -27.35 16 15 H 0.07 3.71 7.95 -2.91 -0.02 3.69 16 16 C 0.06 3.14 5.47 84.66 0.46 3.60 16 17 N -0.90 -49.27 13.96 21.45 0.30 -48.97 16 18 Si 0.94 40.74 26.03 68.60 1.79 42.53 16 19 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 20 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.27 -12.22 5.80 99.48 0.58 -11.65 16 22 C 0.44 19.69 2.79 71.98 0.20 19.89 16 23 F -0.19 -8.43 15.63 44.97 0.70 -7.73 16 24 F -0.19 -8.44 16.86 44.97 0.76 -7.68 16 25 F -0.19 -7.94 16.97 44.97 0.76 -7.18 16 26 C 0.07 1.59 6.57 86.35 0.57 2.16 16 27 C 0.05 1.11 6.99 72.08 0.50 1.62 16 28 O -0.38 -9.03 10.35 -144.55 -1.50 -10.52 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 2.66 7.06 -2.39 -0.02 2.64 16 37 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.41 14.65 6.14 -92.71 -0.57 14.08 16 39 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 40 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.10 2.21 5.78 -2.39 -0.01 2.20 16 42 H 0.14 1.99 8.14 -2.38 -0.02 1.97 16 43 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -65.84 360.11 3.33 -62.51 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.35 Total: 21.61 kcal Atomic # 6 Polarization: 40.90 SS G_CDS: 5.52 Total: 46.42 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -3.51 Total: -101.55 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -3.04 Total: -48.93 kcal Atomic # 9 Polarization: -24.81 SS G_CDS: 2.22 Total: -22.58 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 1.79 Total: 42.53 kcal Total: -65.84 3.33 -62.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932894290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -221.977 kcal (2) G-P(sol) polarization free energy of solvation -65.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -287.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -284.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds