Wall clock time and date at job start Sat Apr 11 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46507 * 119.99662 * 2 1 4 4 C 1.52999 * 109.46824 * 269.99602 * 3 2 1 5 5 O 1.42905 * 109.54257 * 65.00244 * 4 3 2 6 6 C 1.53176 * 109.54467 * 304.82316 * 4 3 2 7 7 C 1.53100 * 109.15788 * 183.24242 * 6 4 3 8 8 O 1.42902 * 109.48669 * 57.47360 * 7 6 4 9 9 C 1.42899 * 114.09977 * 298.89019 * 8 7 6 10 10 C 1.53089 * 109.41564 * 61.15719 * 9 8 7 11 11 C 1.34775 * 120.00462 * 179.97438 * 2 1 3 12 12 O 1.21583 * 120.00144 * 180.02562 * 11 2 1 13 13 N 1.34777 * 119.99585 * 0.02562 * 11 2 1 14 14 C 1.46499 * 119.99665 * 179.72218 * 13 11 2 15 15 H 1.08999 * 109.47228 * 325.27715 * 14 13 11 16 16 C 1.50706 * 109.47303 * 205.27741 * 14 13 11 17 17 H 1.07998 * 119.99769 * 0.02562 * 16 14 13 18 18 C 1.37877 * 120.00286 * 179.97438 * 16 14 13 19 19 N 1.31515 * 119.99896 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 119.99872 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47221 * 60.00660 * 20 18 16 22 22 H 1.48504 * 109.46710 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47441 * 300.00053 * 20 18 16 24 24 C 1.52999 * 109.47341 * 85.27876 * 14 13 11 25 25 F 1.39897 * 109.47184 * 59.99699 * 24 14 13 26 26 F 1.39898 * 109.47495 * 179.97438 * 24 14 13 27 27 F 1.39903 * 109.46951 * 299.99953 * 24 14 13 28 28 H 1.08997 * 109.47504 * 270.00259 * 1 2 3 29 29 H 1.09002 * 109.47236 * 30.00645 * 1 2 3 30 30 H 1.09003 * 109.46685 * 150.00239 * 1 2 3 31 31 H 1.09000 * 109.46892 * 29.99368 * 3 2 1 32 32 H 1.08999 * 109.46909 * 150.00039 * 3 2 1 33 33 H 0.96701 * 113.99462 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.52494 * 303.05874 * 6 4 3 35 35 H 1.09003 * 109.52354 * 63.24382 * 6 4 3 36 36 H 1.08998 * 109.40786 * 297.48958 * 7 6 4 37 37 H 1.09005 * 109.49471 * 177.51247 * 7 6 4 38 38 H 1.09004 * 109.47781 * 301.17263 * 9 8 7 39 39 H 1.08998 * 109.49166 * 181.14977 * 9 8 7 40 40 H 1.09004 * 109.52443 * 182.49139 * 10 9 8 41 41 H 1.08990 * 109.57417 * 62.33045 * 10 9 8 42 42 H 0.97001 * 120.00485 * 0.02562 * 13 11 2 43 43 H 0.96999 * 119.99952 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 8 1.2068 1.9939 -2.0830 6 6 3.1756 0.5928 -2.2003 7 6 3.4983 1.0739 -3.6175 8 8 4.2888 2.2623 -3.5490 9 6 3.6432 3.3556 -2.8933 10 6 3.3283 2.9671 -1.4464 11 6 2.1389 -1.1671 0.0005 12 8 3.3548 -1.1671 0.0010 13 7 1.4650 -2.3343 0.0005 14 6 2.1976 -3.6030 -0.0051 15 1 3.1085 -3.4940 -0.5937 16 6 1.3339 -4.6792 -0.6109 17 1 0.3390 -4.4418 -0.9574 18 6 1.8142 -5.9667 -0.7236 19 7 3.0260 -6.2557 -0.3020 20 14 0.7438 -7.3004 -1.4751 21 1 0.3914 -6.9259 -2.8682 22 1 1.4864 -8.5864 -1.4807 23 1 -0.4973 -7.4495 -0.6735 24 6 2.5610 -3.9885 1.4303 25 9 1.3918 -4.1284 2.1858 26 9 3.2600 -5.2003 1.4250 27 9 3.3628 -2.9895 1.9927 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6082 2.0284 0.5137 32 1 3.1498 1.1385 0.5138 33 1 1.2936 2.2799 -3.0026 34 1 4.1014 0.3415 -1.6827 35 1 2.5346 -0.2875 -2.2500 36 1 2.5701 1.2848 -4.1485 37 1 4.0521 0.2988 -4.1474 38 1 2.7169 3.5964 -3.4149 39 1 4.3013 4.2245 -2.9014 40 1 2.7964 3.7833 -0.9576 41 1 4.2567 2.7657 -0.9121 42 1 0.4950 -2.3344 -0.0002 43 1 3.3638 -7.1616 -0.3810 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932907272.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:53 Heat of formation + Delta-G solvation = -251.148805 kcal Electronic energy + Delta-G solvation = -32796.186355 eV Core-core repulsion = 27848.810538 eV Total energy + Delta-G solvation = -4947.375817 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.30004 -45.95199 -45.57198 -40.54158 -39.21992 -36.66945 -35.00573 -34.54445 -32.71947 -32.02551 -31.21321 -28.80740 -27.62111 -25.91305 -24.54134 -23.70626 -23.23095 -21.31952 -19.99545 -19.40619 -18.12685 -17.51282 -16.87416 -16.72228 -16.58087 -16.23905 -16.01370 -15.91450 -15.24216 -15.15391 -14.81383 -14.73866 -14.32962 -14.17829 -13.46664 -13.20879 -12.93062 -12.79687 -12.49151 -12.43624 -12.39301 -12.35174 -12.31900 -12.19482 -11.95087 -11.85150 -11.81295 -11.76977 -11.46153 -11.34905 -11.15104 -10.86425 -10.76471 -10.49142 -10.37666 -9.91036 -9.69435 -9.64617 -9.44526 -8.70900 -8.42268 -8.06957 -6.22489 -4.46388 3.07302 3.19927 3.25179 3.27216 3.72244 3.73104 4.10195 4.18283 4.46195 4.59113 4.62051 4.67916 4.72877 4.89502 4.94758 4.96928 5.15174 5.35553 5.38232 5.47826 5.49897 5.55629 5.69962 5.79571 5.80215 5.87808 5.89683 5.92524 5.94803 6.12140 6.25017 6.44254 6.69278 6.91597 7.04675 7.23861 7.36731 7.48575 7.61937 7.66513 8.49860 8.62233 9.15316 9.26316 10.69016 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016110 B = 0.003723 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.680456 B = 7519.460920 C = 7976.013560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.631 5.631 3 C 0.154 3.846 4 C 0.117 3.883 5 O -0.554 6.554 6 C -0.172 4.172 7 C 0.057 3.943 8 O -0.382 6.382 9 C 0.059 3.941 10 C -0.181 4.181 11 C 0.700 3.300 12 O -0.581 6.581 13 N -0.726 5.726 14 C 0.263 3.737 15 H 0.084 0.916 16 C -0.552 4.552 17 H 0.075 0.925 18 C 0.066 3.934 19 N -0.839 5.839 20 Si 0.914 3.086 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.416 3.584 25 F -0.211 7.211 26 F -0.138 7.138 27 F -0.217 7.217 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.366 0.634 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.098 0.902 38 H 0.048 0.952 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.394 0.606 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.856 16.155 -3.285 16.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.369 5.369 3 C 0.030 3.970 4 C 0.075 3.925 5 O -0.361 6.361 6 C -0.210 4.210 7 C -0.020 4.020 8 O -0.301 6.301 9 C -0.017 4.017 10 C -0.219 4.219 11 C 0.401 3.599 12 O -0.459 6.459 13 N -0.380 5.380 14 C 0.157 3.843 15 H 0.102 0.898 16 C -0.589 4.589 17 H 0.093 0.907 18 C -0.143 4.143 19 N -0.472 5.472 20 Si 0.741 3.259 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.199 1.199 24 C 0.359 3.641 25 F -0.193 7.193 26 F -0.119 7.119 27 F -0.199 7.199 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.214 0.786 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.116 0.884 38 H 0.066 0.934 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.229 0.771 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.835 15.773 -2.708 16.253 hybrid contribution -1.069 -0.684 -0.414 1.335 sum -3.904 15.089 -3.121 15.895 Atomic orbital electron populations 1.21675 0.80008 1.03272 1.00957 1.46839 1.06222 1.04480 1.79338 1.21206 0.98380 0.84436 0.93021 1.21803 0.83448 0.92919 0.94346 1.86552 1.30356 1.89692 1.29459 1.22816 1.03137 0.98996 0.96021 1.22680 0.95219 0.87246 0.96808 1.87965 1.42967 1.21189 1.77995 1.22536 0.97673 0.90017 0.91520 1.22816 1.01599 0.98861 0.98634 1.15998 0.85563 0.80475 0.77847 1.90898 1.11268 1.86032 1.57693 1.45422 1.09865 1.04566 1.78107 1.19575 0.96499 0.80733 0.87539 0.89808 1.20827 1.01687 0.92703 1.43696 0.90678 1.25066 0.95685 0.98844 0.94730 1.70394 1.15541 1.21096 1.40202 0.86285 0.80024 0.80006 0.79591 1.19828 1.20874 1.19855 1.23182 0.73690 0.75573 0.91624 1.92980 1.50633 1.95956 1.79698 1.93398 1.79081 1.43297 1.96135 1.93070 1.75438 1.63151 1.88196 0.93422 0.90334 0.91614 0.90365 0.88450 0.78575 0.88684 0.89847 0.93647 0.88377 0.93413 0.88648 0.90110 0.89660 0.77063 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.04 10.02 59.84 0.60 1.64 16 2 N -0.63 -9.65 2.54 -187.35 -0.48 -10.13 16 3 C 0.15 2.02 4.80 -4.04 -0.02 2.00 16 4 C 0.12 1.37 0.89 -90.44 -0.08 1.29 16 5 O -0.55 -6.00 11.79 -35.23 -0.42 -6.42 16 6 C -0.17 -2.44 3.74 -26.59 -0.10 -2.53 16 7 C 0.06 0.68 6.59 37.21 0.25 0.93 16 8 O -0.38 -4.68 10.77 -35.23 -0.38 -5.06 16 9 C 0.06 0.54 6.59 37.20 0.25 0.78 16 10 C -0.18 -1.73 5.15 -26.59 -0.14 -1.86 16 11 C 0.70 13.85 6.17 -86.92 -0.54 13.31 16 12 O -0.58 -13.29 12.60 5.29 0.07 -13.23 16 13 N -0.73 -15.02 4.85 -59.81 -0.29 -15.31 16 14 C 0.26 6.53 2.21 -69.08 -0.15 6.38 16 15 H 0.08 2.33 7.57 -51.93 -0.39 1.94 16 16 C -0.55 -14.02 8.46 -34.44 -0.29 -14.32 16 17 H 0.08 1.80 7.74 -52.49 -0.41 1.40 16 18 C 0.07 1.70 5.20 -17.82 -0.09 1.61 16 19 N -0.84 -22.97 9.50 55.43 0.53 -22.44 16 20 Si 0.91 20.02 29.54 -169.99 -5.02 15.00 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 C 0.42 10.76 2.81 37.16 0.10 10.87 16 25 F -0.21 -5.27 16.94 2.25 0.04 -5.23 16 26 F -0.14 -3.85 12.91 2.25 0.03 -3.82 16 27 F -0.22 -5.59 15.69 2.25 0.04 -5.55 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.86 7.12 -51.93 -0.37 0.49 16 30 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 31 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 32 H 0.10 1.41 7.42 -51.93 -0.39 1.03 16 33 H 0.37 3.11 5.97 45.56 0.27 3.38 16 34 H 0.09 1.61 7.24 -51.93 -0.38 1.23 16 35 H 0.08 1.40 6.53 -51.93 -0.34 1.06 16 36 H 0.05 0.46 6.93 -51.93 -0.36 0.10 16 37 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.05 0.36 6.93 -51.93 -0.36 0.00 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.39 7.23 6.27 -40.82 -0.26 6.98 16 43 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 344.26 15.07 5.19 5.19 Total: -1.00 -30.77 344.26 -5.88 -36.65 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -4.97 Total: 10.25 kcal Atomic # 6 Polarization: 20.31 SS G_CDS: -0.21 Total: 20.10 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.24 Total: -47.88 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.73 Total: -24.70 kcal Atomic # 9 Polarization: -14.71 SS G_CDS: 0.10 Total: -14.60 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.77 -5.88 -36.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932907272.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.498 kcal (2) G-P(sol) polarization free energy of solvation -30.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds