Wall clock time and date at job start Sat Apr 11 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 O 1.42896 * 109.54319 * 65.00027 * 4 3 2 6 6 C 1.53178 * 109.54301 * 304.82580 * 4 3 2 7 7 C 1.53106 * 109.15686 * 183.24406 * 6 4 3 8 8 O 1.42905 * 109.49003 * 57.47191 * 7 6 4 9 9 C 1.42906 * 114.09597 * 298.89185 * 8 7 6 10 10 C 1.53092 * 109.41491 * 61.15642 * 9 8 7 11 11 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 12 12 O 1.21582 * 120.00123 * 180.02562 * 11 2 1 13 13 N 1.34779 * 119.99559 * 0.02562 * 11 2 1 14 14 C 1.46502 * 119.99726 * 179.97438 * 13 11 2 15 15 H 1.09000 * 109.46753 * 34.99893 * 14 13 11 16 16 C 1.50698 * 109.46767 * 154.99877 * 14 13 11 17 17 H 1.07990 * 120.00380 * 0.02562 * 16 14 13 18 18 C 1.37884 * 119.99588 * 179.97438 * 16 14 13 19 19 N 1.31516 * 120.00209 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99965 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46984 * 90.00103 * 20 18 16 22 22 H 1.48496 * 109.47341 * 210.00276 * 20 18 16 23 23 H 1.48504 * 109.47051 * 330.00317 * 20 18 16 24 24 C 1.53002 * 109.46947 * 275.00007 * 14 13 11 25 25 F 1.39892 * 109.47146 * 60.00158 * 24 14 13 26 26 F 1.39908 * 109.46750 * 179.97438 * 24 14 13 27 27 F 1.39895 * 109.47003 * 299.99545 * 24 14 13 28 28 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 29 29 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 30 30 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 31 31 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 32 32 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 33 33 H 0.96701 * 114.00114 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.52203 * 303.05301 * 6 4 3 35 35 H 1.08992 * 109.52446 * 63.24269 * 6 4 3 36 36 H 1.09001 * 109.40252 * 297.48786 * 7 6 4 37 37 H 1.09000 * 109.49225 * 177.50998 * 7 6 4 38 38 H 1.08994 * 109.48138 * 301.17496 * 9 8 7 39 39 H 1.09004 * 109.48716 * 181.14255 * 9 8 7 40 40 H 1.09004 * 109.52153 * 182.48335 * 10 9 8 41 41 H 1.09002 * 109.57173 * 62.32863 * 10 9 8 42 42 H 0.97001 * 119.99999 * 359.97438 * 13 11 2 43 43 H 0.96994 * 120.00222 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 8 3.3208 0.7735 2.0830 6 6 1.1230 1.7778 2.2004 7 6 1.3783 2.2979 3.6176 8 8 2.0122 3.5768 3.5491 9 6 3.2819 3.5643 2.8934 10 6 3.1028 3.0973 1.4465 11 6 2.1389 -1.1672 0.0005 12 8 3.3548 -1.1672 0.0010 13 7 1.4650 -2.3344 0.0005 14 6 2.1975 -3.6031 0.0005 15 1 3.1082 -3.4968 0.5900 16 6 1.3335 -4.6819 0.6010 17 1 0.3382 -4.4463 0.9475 18 6 1.8134 -5.9702 0.7070 19 7 3.0253 -6.2574 0.2845 20 14 0.7422 -7.3077 1.4507 21 1 -0.0540 -7.9574 0.3787 22 1 1.6031 -8.3214 2.1113 23 1 -0.1743 -6.7075 2.4533 24 6 2.5614 -3.9819 -1.4365 25 9 3.3634 -2.9804 -1.9939 26 9 3.2614 -5.1932 -1.4364 27 9 1.3925 -4.1184 -2.1930 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 -0.8900 -0.5138 30 1 -0.3633 0.8900 -0.5139 31 1 3.1499 1.1384 -0.5137 32 1 1.6085 2.0284 -0.5138 33 1 3.5257 0.9920 3.0024 34 1 0.4426 2.4539 1.6828 35 1 0.6812 0.7826 2.2501 36 1 2.0251 1.5995 4.1486 37 1 0.4303 2.3900 4.1475 38 1 3.9536 2.8825 3.4148 39 1 3.7052 4.5688 2.9014 40 1 4.0756 3.0448 0.9576 41 1 2.4640 3.8006 0.9122 42 1 0.4950 -2.3344 0.0005 43 1 3.3627 -7.1637 0.3588 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932907273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:55 Heat of formation + Delta-G solvation = -246.549263 kcal Electronic energy + Delta-G solvation = -32631.531000 eV Core-core repulsion = 27684.354634 eV Total energy + Delta-G solvation = -4947.176366 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.26142 -45.91544 -45.53042 -40.50079 -39.17378 -36.63486 -35.01881 -34.45277 -32.59510 -31.96570 -31.36732 -28.84192 -27.74237 -25.87896 -24.50017 -23.86760 -23.18083 -21.26966 -20.04444 -19.34838 -18.05525 -17.52115 -16.81882 -16.69538 -16.55299 -16.27331 -16.15274 -15.84653 -15.24830 -15.10038 -14.86840 -14.73678 -14.28473 -14.22880 -13.35675 -13.30204 -12.94741 -12.82913 -12.64709 -12.50353 -12.33632 -12.31422 -12.27335 -12.16611 -11.90228 -11.82932 -11.76417 -11.65040 -11.58293 -11.36717 -11.10951 -10.85491 -10.74292 -10.58380 -10.33671 -9.87269 -9.78972 -9.58123 -9.28425 -8.67451 -8.35295 -8.01668 -6.18551 -4.41993 3.10520 3.20923 3.27255 3.29988 3.59753 3.90861 4.16279 4.21797 4.50076 4.56775 4.60068 4.60840 4.71977 4.73299 4.91554 4.98590 5.04925 5.17969 5.31243 5.40734 5.41907 5.42595 5.56601 5.59541 5.68876 5.76706 5.91210 5.93402 5.95203 5.97145 6.02900 6.29949 6.73944 6.90801 6.97519 7.33009 7.43725 7.66598 7.71235 7.73138 8.55021 8.72841 9.22177 9.39490 10.73023 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017340 B = 0.003547 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.343042 B = 7891.449641 C = 8519.177193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.634 5.634 3 C 0.153 3.847 4 C 0.114 3.886 5 O -0.526 6.526 6 C -0.181 4.181 7 C 0.056 3.944 8 O -0.384 6.384 9 C 0.058 3.942 10 C -0.181 4.181 11 C 0.703 3.297 12 O -0.563 6.563 13 N -0.729 5.729 14 C 0.263 3.737 15 H 0.085 0.915 16 C -0.550 4.550 17 H 0.075 0.925 18 C 0.065 3.935 19 N -0.839 5.839 20 Si 0.914 3.086 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.271 1.271 24 C 0.415 3.585 25 F -0.217 7.217 26 F -0.138 7.138 27 F -0.212 7.212 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.360 0.640 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.391 0.609 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.014 16.902 3.201 17.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.373 5.373 3 C 0.028 3.972 4 C 0.071 3.929 5 O -0.330 6.330 6 C -0.219 4.219 7 C -0.020 4.020 8 O -0.303 6.303 9 C -0.019 4.019 10 C -0.220 4.220 11 C 0.405 3.595 12 O -0.438 6.438 13 N -0.383 5.383 14 C 0.157 3.843 15 H 0.102 0.898 16 C -0.587 4.587 17 H 0.093 0.907 18 C -0.144 4.144 19 N -0.473 5.473 20 Si 0.741 3.259 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.196 1.196 24 C 0.359 3.641 25 F -0.199 7.199 26 F -0.119 7.119 27 F -0.194 7.194 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.206 0.794 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.226 0.774 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.037 16.562 2.626 17.248 hybrid contribution -0.920 -0.723 0.425 1.245 sum -4.957 15.839 3.050 16.875 Atomic orbital electron populations 1.21797 0.80726 1.02696 1.01326 1.46838 1.05519 1.04881 1.80052 1.21180 0.98345 0.84417 0.93238 1.21737 0.88793 0.87773 0.94549 1.86942 1.67677 1.49836 1.28584 1.22966 0.98845 1.03177 0.96913 1.22630 0.98202 0.84913 0.96300 1.87939 1.33796 1.30347 1.78231 1.22581 0.85387 1.02262 0.91643 1.22831 1.03091 0.97615 0.98425 1.15906 0.85552 0.80222 0.77862 1.90920 1.11170 1.85621 1.56125 1.45392 1.09599 1.04598 1.78710 1.19556 0.96573 0.80801 0.87377 0.89784 1.20864 1.01621 0.92533 1.43682 0.90684 1.25074 0.95669 0.98876 0.94763 1.70411 1.15531 1.20907 1.40428 0.86233 0.79831 0.80658 0.79200 1.20279 1.20831 1.19562 1.23214 0.73668 0.75489 0.91737 1.93067 1.75421 1.63004 1.88367 1.93398 1.79034 1.43347 1.96164 1.92973 1.50694 1.95991 1.79695 0.92934 0.91331 0.91463 0.89039 0.89887 0.79377 0.90480 0.89218 0.93041 0.88587 0.92980 0.88550 0.89675 0.90182 0.77388 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 9.21 59.85 0.55 1.42 16 2 N -0.63 -9.64 2.48 -187.35 -0.46 -10.11 16 3 C 0.15 1.99 4.78 -4.04 -0.02 1.97 16 4 C 0.11 1.33 0.89 -90.43 -0.08 1.25 16 5 O -0.53 -7.85 11.75 -42.86 -0.50 -8.35 16 6 C -0.18 -1.81 4.21 -26.58 -0.11 -1.92 16 7 C 0.06 0.52 6.59 37.21 0.25 0.77 16 8 O -0.38 -3.96 10.77 -35.23 -0.38 -4.34 16 9 C 0.06 0.50 6.59 37.20 0.25 0.75 16 10 C -0.18 -1.67 5.15 -26.59 -0.14 -1.80 16 11 C 0.70 14.58 7.44 -86.91 -0.65 13.93 16 12 O -0.56 -13.97 13.71 -2.34 -0.03 -14.00 16 13 N -0.73 -15.49 4.85 -59.81 -0.29 -15.78 16 14 C 0.26 6.73 2.21 -69.08 -0.15 6.58 16 15 H 0.08 2.44 7.58 -51.93 -0.39 2.04 16 16 C -0.55 -14.23 8.47 -34.44 -0.29 -14.52 16 17 H 0.08 1.83 7.74 -52.49 -0.41 1.43 16 18 C 0.06 1.71 5.20 -17.82 -0.09 1.61 16 19 N -0.84 -23.35 9.50 55.43 0.53 -22.83 16 20 Si 0.91 20.25 29.54 -169.99 -5.02 15.22 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 C 0.42 10.96 2.81 37.16 0.10 11.06 16 25 F -0.22 -5.72 15.67 2.25 0.04 -5.69 16 26 F -0.14 -3.92 12.91 2.25 0.03 -3.89 16 27 F -0.21 -5.34 16.94 2.25 0.04 -5.30 16 28 H 0.05 0.53 6.28 -51.93 -0.33 0.20 16 29 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 30 H 0.07 0.56 7.89 -51.93 -0.41 0.15 16 31 H 0.09 1.43 7.42 -51.93 -0.39 1.05 16 32 H 0.08 0.80 7.89 -51.93 -0.41 0.39 16 33 H 0.36 4.23 5.97 45.56 0.27 4.50 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.02 5.64 -51.93 -0.29 0.72 16 36 H 0.05 0.48 6.93 -51.93 -0.36 0.12 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.43 6.93 -51.93 -0.36 0.07 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.39 7.24 6.27 -40.82 -0.26 6.99 16 43 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -33.28 344.91 -6.16 -39.44 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -4.91 Total: 9.32 kcal Atomic # 6 Polarization: 21.49 SS G_CDS: -0.39 Total: 21.10 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.23 Total: -48.71 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.91 Total: -26.69 kcal Atomic # 9 Polarization: -14.98 SS G_CDS: 0.10 Total: -14.88 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.28 -6.16 -39.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932907273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.110 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds