Wall clock time and date at job start Sat Apr 11 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 O 1.42896 * 109.54319 * 65.00027 * 4 3 2 6 6 C 1.53178 * 109.54301 * 304.82580 * 4 3 2 7 7 C 1.53106 * 109.15686 * 183.24406 * 6 4 3 8 8 O 1.42905 * 109.49003 * 57.47191 * 7 6 4 9 9 C 1.42906 * 114.09597 * 298.89185 * 8 7 6 10 10 C 1.53092 * 109.41491 * 61.15642 * 9 8 7 11 11 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 12 12 O 1.21582 * 120.00123 * 180.02562 * 11 2 1 13 13 N 1.34779 * 119.99559 * 0.02562 * 11 2 1 14 14 C 1.46502 * 119.99726 * 179.97438 * 13 11 2 15 15 H 1.09000 * 109.46753 * 34.99893 * 14 13 11 16 16 C 1.50698 * 109.46767 * 154.99877 * 14 13 11 17 17 H 1.07990 * 120.00380 * 0.02562 * 16 14 13 18 18 C 1.37884 * 119.99588 * 179.97438 * 16 14 13 19 19 N 1.31516 * 120.00209 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99965 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46984 * 90.00103 * 20 18 16 22 22 H 1.48496 * 109.47341 * 210.00276 * 20 18 16 23 23 H 1.48504 * 109.47051 * 330.00317 * 20 18 16 24 24 C 1.53002 * 109.46947 * 275.00007 * 14 13 11 25 25 F 1.39892 * 109.47146 * 60.00158 * 24 14 13 26 26 F 1.39908 * 109.46750 * 179.97438 * 24 14 13 27 27 F 1.39895 * 109.47003 * 299.99545 * 24 14 13 28 28 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 29 29 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 30 30 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 31 31 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 32 32 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 33 33 H 0.96701 * 114.00114 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.52203 * 303.05301 * 6 4 3 35 35 H 1.08992 * 109.52446 * 63.24269 * 6 4 3 36 36 H 1.09001 * 109.40252 * 297.48786 * 7 6 4 37 37 H 1.09000 * 109.49225 * 177.50998 * 7 6 4 38 38 H 1.08994 * 109.48138 * 301.17496 * 9 8 7 39 39 H 1.09004 * 109.48716 * 181.14255 * 9 8 7 40 40 H 1.09004 * 109.52153 * 182.48335 * 10 9 8 41 41 H 1.09002 * 109.57173 * 62.32863 * 10 9 8 42 42 H 0.97001 * 119.99999 * 359.97438 * 13 11 2 43 43 H 0.96994 * 120.00222 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 8 3.3208 0.7735 2.0830 6 6 1.1230 1.7778 2.2004 7 6 1.3783 2.2979 3.6176 8 8 2.0122 3.5768 3.5491 9 6 3.2819 3.5643 2.8934 10 6 3.1028 3.0973 1.4465 11 6 2.1389 -1.1672 0.0005 12 8 3.3548 -1.1672 0.0010 13 7 1.4650 -2.3344 0.0005 14 6 2.1975 -3.6031 0.0005 15 1 3.1082 -3.4968 0.5900 16 6 1.3335 -4.6819 0.6010 17 1 0.3382 -4.4463 0.9475 18 6 1.8134 -5.9702 0.7070 19 7 3.0253 -6.2574 0.2845 20 14 0.7422 -7.3077 1.4507 21 1 -0.0540 -7.9574 0.3787 22 1 1.6031 -8.3214 2.1113 23 1 -0.1743 -6.7075 2.4533 24 6 2.5614 -3.9819 -1.4365 25 9 3.3634 -2.9804 -1.9939 26 9 3.2614 -5.1932 -1.4364 27 9 1.3925 -4.1184 -2.1930 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 -0.8900 -0.5138 30 1 -0.3633 0.8900 -0.5139 31 1 3.1499 1.1384 -0.5137 32 1 1.6085 2.0284 -0.5138 33 1 3.5257 0.9920 3.0024 34 1 0.4426 2.4539 1.6828 35 1 0.6812 0.7826 2.2501 36 1 2.0251 1.5995 4.1486 37 1 0.4303 2.3900 4.1475 38 1 3.9536 2.8825 3.4148 39 1 3.7052 4.5688 2.9014 40 1 4.0756 3.0448 0.9576 41 1 2.4640 3.8006 0.9122 42 1 0.4950 -2.3344 0.0005 43 1 3.3627 -7.1637 0.3588 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932907273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:54 Heat of formation + Delta-G solvation = -271.351901 kcal Electronic energy + Delta-G solvation = -32632.606523 eV Core-core repulsion = 27684.354634 eV Total energy + Delta-G solvation = -4948.251889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.39574 -48.03073 -47.70743 -41.53596 -40.49074 -37.66138 -36.46766 -36.12799 -34.41468 -33.02296 -32.11171 -30.40316 -28.98674 -27.02415 -26.53930 -24.61429 -24.32328 -23.05680 -21.10679 -20.84926 -19.55129 -18.85313 -18.72580 -18.57164 -18.43316 -17.62352 -17.13542 -17.03569 -16.77762 -16.52829 -16.11701 -15.72438 -15.44137 -15.26821 -15.02671 -14.96039 -14.61716 -14.47885 -14.43304 -14.28391 -14.17219 -14.00218 -13.84262 -13.54593 -13.18110 -13.14203 -12.97926 -12.72925 -12.70004 -12.63592 -12.58972 -12.43061 -12.22561 -12.16083 -11.53686 -11.37898 -11.05879 -10.70801 -10.67307 -10.59862 -10.02951 -9.39096 -8.19071 -6.50153 1.46748 1.48307 1.59127 1.75429 2.26120 2.37826 2.60472 2.90503 2.96287 3.07758 3.30910 3.74370 3.75679 3.79668 3.81919 3.91324 3.99713 4.18520 4.21196 4.29625 4.35406 4.44479 4.53798 4.66968 4.73721 4.77474 4.78883 4.86688 4.90118 4.95164 5.08285 5.17827 5.19503 5.48162 5.55303 5.68406 5.72476 6.06484 6.19979 6.54952 6.82004 7.16198 7.21108 7.79105 8.73837 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017340 B = 0.003547 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.343042 B = 7891.449641 C = 8519.177193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.624 5.624 3 C 0.145 3.855 4 C 0.109 3.891 5 O -0.561 6.561 6 C -0.172 4.172 7 C 0.056 3.944 8 O -0.394 6.394 9 C 0.057 3.943 10 C -0.173 4.173 11 C 0.696 3.304 12 O -0.613 6.613 13 N -0.724 5.724 14 C 0.273 3.727 15 H 0.040 0.960 16 C -0.559 4.559 17 H 0.090 0.910 18 C 0.014 3.986 19 N -0.876 5.876 20 Si 0.985 3.015 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.256 1.256 24 C 0.412 3.588 25 F -0.220 7.220 26 F -0.152 7.152 27 F -0.204 7.204 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.126 0.874 33 H 0.368 0.632 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.046 0.954 37 H 0.111 0.889 38 H 0.050 0.950 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.405 0.595 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.692 18.368 3.793 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.361 5.361 3 C 0.022 3.978 4 C 0.067 3.933 5 O -0.368 6.368 6 C -0.210 4.210 7 C -0.021 4.021 8 O -0.313 6.313 9 C -0.020 4.020 10 C -0.211 4.211 11 C 0.398 3.602 12 O -0.492 6.492 13 N -0.379 5.379 14 C 0.165 3.835 15 H 0.058 0.942 16 C -0.596 4.596 17 H 0.108 0.892 18 C -0.191 4.191 19 N -0.510 5.510 20 Si 0.808 3.192 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.180 1.180 24 C 0.356 3.644 25 F -0.202 7.202 26 F -0.133 7.133 27 F -0.186 7.186 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.076 0.924 32 H 0.144 0.856 33 H 0.216 0.784 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.129 0.871 38 H 0.068 0.932 39 H 0.133 0.867 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.243 0.757 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.779 18.099 3.223 19.594 hybrid contribution -0.063 -1.087 0.205 1.108 sum -6.843 17.012 3.429 18.654 Atomic orbital electron populations 1.22120 0.77758 1.04407 1.02937 1.46841 1.07317 1.03647 1.78281 1.21482 0.97504 0.84239 0.94582 1.21869 0.89575 0.88305 0.93502 1.86917 1.68718 1.51590 1.29543 1.22871 0.97875 1.02936 0.97276 1.22682 0.98790 0.84586 0.96006 1.87931 1.34288 1.30655 1.78403 1.22683 0.84982 1.03278 0.91047 1.22756 1.02937 0.96349 0.99070 1.16157 0.85148 0.81336 0.77585 1.90882 1.13537 1.86529 1.58213 1.45133 1.10068 1.03675 1.79064 1.19093 0.95411 0.82820 0.86175 0.94215 1.21198 1.02147 0.92716 1.43542 0.89153 1.26023 0.96830 1.01314 0.94938 1.70549 1.17369 1.21384 1.41678 0.85142 0.78062 0.77443 0.78554 1.19871 1.20842 1.17990 1.23381 0.73678 0.74989 0.92358 1.93056 1.75616 1.63046 1.88454 1.93371 1.79422 1.44220 1.96274 1.92972 1.50114 1.95945 1.79528 0.91327 0.91780 0.87635 0.92383 0.85602 0.78384 0.88444 0.90518 0.93604 0.87081 0.93184 0.86746 0.90289 0.88346 0.75705 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 9.21 127.77 1.18 2.52 16 2 N -0.62 -18.23 2.48 -864.91 -2.14 -20.37 16 3 C 0.15 3.60 4.78 86.38 0.41 4.01 16 4 C 0.11 2.40 0.89 -10.67 -0.01 2.39 16 5 O -0.56 -17.08 11.75 -141.68 -1.66 -18.74 16 6 C -0.17 -3.01 4.21 30.69 0.13 -2.88 16 7 C 0.06 0.93 6.59 72.02 0.47 1.40 16 8 O -0.39 -7.18 10.77 -148.98 -1.60 -8.78 16 9 C 0.06 0.88 6.59 72.01 0.47 1.35 16 10 C -0.17 -2.86 5.15 30.68 0.16 -2.71 16 11 C 0.70 29.28 7.44 179.05 1.33 30.62 16 12 O -0.61 -31.72 13.71 3.32 0.05 -31.67 16 13 N -0.72 -30.97 4.85 -461.40 -2.24 -33.21 16 14 C 0.27 14.33 2.21 44.24 0.10 14.43 16 15 H 0.04 2.45 7.58 -2.39 -0.02 2.43 16 16 C -0.56 -28.93 8.47 25.60 0.22 -28.71 16 17 H 0.09 4.29 7.74 -2.92 -0.02 4.27 16 18 C 0.01 0.74 5.20 84.66 0.44 1.18 16 19 N -0.88 -49.69 9.50 21.45 0.20 -49.49 16 20 Si 0.98 40.98 29.54 68.60 2.03 43.01 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 24 C 0.41 22.27 2.81 71.98 0.20 22.47 16 25 F -0.22 -11.97 15.67 44.97 0.70 -11.27 16 26 F -0.15 -8.85 12.91 44.97 0.58 -8.27 16 27 F -0.20 -10.28 16.94 44.97 0.76 -9.52 16 28 H 0.07 1.15 6.28 -2.39 -0.01 1.14 16 29 H 0.06 1.31 6.36 -2.39 -0.02 1.30 16 30 H 0.11 1.27 7.89 -2.38 -0.02 1.25 16 31 H 0.06 1.85 7.42 -2.39 -0.02 1.83 16 32 H 0.13 1.98 7.89 -2.39 -0.02 1.96 16 33 H 0.37 8.93 5.97 -74.06 -0.44 8.49 16 34 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.56 5.64 -2.39 -0.01 1.55 16 36 H 0.05 0.81 6.93 -2.39 -0.02 0.79 16 37 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.05 0.79 6.93 -2.39 -0.02 0.77 16 39 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.41 14.66 6.27 -92.71 -0.58 14.08 16 43 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -74.54 344.91 1.84 -72.70 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.06 Total: 29.54 kcal Atomic # 6 Polarization: 40.97 SS G_CDS: 5.11 Total: 46.07 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -4.18 Total: -103.07 kcal Atomic # 8 Polarization: -55.98 SS G_CDS: -3.22 Total: -59.20 kcal Atomic # 9 Polarization: -31.10 SS G_CDS: 2.05 Total: -29.05 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -74.54 1.84 -72.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932907273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.652 kcal (2) G-P(sol) polarization free energy of solvation -74.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -273.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds