Wall clock time and date at job start Sat Apr 11 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.46730 * 2 1 4 4 C 1.42905 * 113.99815 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46957 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.47247 * 65.00168 * 5 4 3 7 7 C 1.42894 * 114.00142 * 179.97438 * 6 5 4 8 8 C 1.53942 * 113.74123 * 248.74022 * 7 6 5 9 9 N 1.47813 * 86.03924 * 222.08448 * 8 7 6 10 10 C 1.34778 * 134.45766 * 204.64603 * 9 8 7 11 11 O 1.21591 * 119.99582 * 179.86350 * 10 9 8 12 12 N 1.34770 * 120.00197 * 359.86855 * 10 9 8 13 13 C 1.46497 * 119.99889 * 180.02562 * 12 10 9 14 14 H 1.08991 * 109.47652 * 34.99945 * 13 12 10 15 15 C 1.50707 * 109.46957 * 154.99932 * 13 12 10 16 16 H 1.07997 * 120.00120 * 116.79147 * 15 13 12 17 17 C 1.37870 * 119.99782 * 296.79136 * 15 13 12 18 18 N 1.31513 * 120.00151 * 173.99948 * 17 15 13 19 19 Si 1.86799 * 120.00312 * 353.99625 * 17 15 13 20 20 H 1.48501 * 109.47074 * 85.15618 * 19 17 15 21 21 H 1.48502 * 109.47535 * 205.15568 * 19 17 15 22 22 H 1.48505 * 109.47124 * 325.16281 * 19 17 15 23 23 C 1.53002 * 109.47161 * 274.99481 * 13 12 10 24 24 F 1.39897 * 109.46751 * 65.25447 * 23 13 12 25 25 F 1.39894 * 109.47267 * 185.25700 * 23 13 12 26 26 F 1.39898 * 109.47024 * 305.25787 * 23 13 12 27 27 C 1.47576 * 91.04792 * 24.54943 * 9 8 7 28 28 H 1.08992 * 109.47407 * 300.00267 * 1 2 3 29 29 H 1.09000 * 109.47145 * 60.00769 * 1 2 3 30 30 H 1.09000 * 109.47022 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47407 * 239.99733 * 2 1 3 32 32 H 1.09004 * 109.46707 * 119.99394 * 2 1 3 33 33 H 1.08998 * 109.46908 * 59.99946 * 4 3 2 34 34 H 1.09000 * 109.46935 * 299.99873 * 4 3 2 35 35 H 1.09000 * 109.47162 * 305.00022 * 5 4 3 36 36 H 1.09003 * 109.46728 * 185.00115 * 5 4 3 37 37 H 1.08998 * 112.94251 * 20.33408 * 7 6 5 38 38 H 1.08997 * 113.77197 * 336.35032 * 8 7 6 39 39 H 1.09001 * 113.76904 * 107.74860 * 8 7 6 40 40 H 0.96997 * 120.00092 * 359.97438 * 12 10 9 41 41 H 0.97002 * 120.00646 * 180.02562 * 18 17 15 42 42 H 1.08999 * 113.77329 * 221.15425 * 27 9 8 43 43 H 1.09006 * 113.87312 * 89.76676 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8253 2.9385 -0.0001 6 8 3.3974 3.5462 1.2204 7 6 3.7190 4.9348 1.3222 8 6 4.7894 5.2468 2.3838 9 7 3.9449 6.4044 2.7469 10 6 4.1776 7.5958 3.3324 11 8 3.2617 8.3762 3.5078 12 7 5.4253 7.9223 3.7236 13 6 5.6780 9.2171 4.3606 14 1 4.8218 9.4924 4.9763 15 6 6.9082 9.1197 5.2257 16 1 7.7786 9.7162 4.9958 17 6 6.9224 8.2690 6.3105 18 7 8.0318 8.0947 6.9950 19 14 5.3660 7.3640 6.8083 20 1 5.2446 6.1147 6.0148 21 1 5.4293 7.0282 8.2535 22 1 4.1867 8.2295 6.5523 23 6 5.8951 10.2817 3.2834 24 9 4.7128 10.4571 2.5562 25 9 6.2542 11.4908 3.8884 26 9 6.9166 9.8705 2.4205 27 6 2.7460 5.7330 2.2087 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8340 0.9765 -0.8891 34 1 3.8333 0.9768 0.8908 35 1 3.3498 3.4410 -0.8424 36 1 4.9082 3.0255 -0.0893 37 1 3.9121 5.3983 0.3548 38 1 4.8630 4.4936 3.1681 39 1 5.7571 5.5220 1.9642 40 1 6.1558 7.2996 3.5840 41 1 8.0420 7.4959 7.7581 42 1 2.0851 6.3954 1.6497 43 1 2.2165 5.1225 2.9403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932907858.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:57 Heat of formation + Delta-G solvation = -235.810632 kcal Electronic energy + Delta-G solvation = -30608.020588 eV Core-core repulsion = 25661.309883 eV Total energy + Delta-G solvation = -4946.710704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.05641 -46.55961 -46.54978 -40.23877 -38.73707 -38.05378 -36.32229 -34.75812 -32.48436 -32.09580 -30.11386 -29.23623 -27.40556 -26.14225 -24.99293 -23.12245 -22.91774 -22.09902 -21.01981 -19.36740 -18.33558 -17.72534 -17.53883 -17.37253 -17.12455 -16.79249 -16.42295 -16.22158 -15.77984 -15.36879 -15.04277 -14.72049 -14.44906 -13.78509 -13.63380 -13.51244 -13.42561 -13.23307 -13.12304 -13.01138 -12.95082 -12.80266 -12.74552 -12.71638 -12.64571 -12.53346 -11.96336 -11.81148 -11.70026 -11.54926 -11.41441 -11.14943 -11.13990 -10.64722 -10.17779 -9.94373 -9.90564 -9.78123 -9.59396 -8.98608 -8.64125 -8.23682 -6.51910 -4.64932 2.67183 3.12917 3.21257 3.30982 3.34164 3.39444 3.65127 3.97585 4.13267 4.19022 4.31526 4.62341 4.68995 4.76861 4.84208 4.87963 4.95972 4.97909 5.00571 5.05054 5.10541 5.22860 5.26211 5.31760 5.36301 5.42613 5.44257 5.55226 5.56921 5.64694 5.78762 5.81316 5.88669 6.44041 6.84237 6.90370 6.99443 7.15799 7.60641 7.92259 8.51604 8.55230 9.02494 9.12630 10.56087 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015661 B = 0.002733 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.483120 B =10241.182903 C =11030.997674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.064 3.936 5 C 0.062 3.938 6 O -0.363 6.363 7 C 0.054 3.946 8 C 0.084 3.916 9 N -0.665 5.665 10 C 0.720 3.280 11 O -0.584 6.584 12 N -0.727 5.727 13 C 0.219 3.781 14 H 0.091 0.909 15 C -0.535 4.535 16 H 0.096 0.904 17 C 0.098 3.902 18 N -0.862 5.862 19 Si 0.880 3.120 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.258 1.258 23 C 0.441 3.559 24 F -0.192 7.192 25 F -0.184 7.184 26 F -0.191 7.191 27 C 0.133 3.867 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.397 0.603 41 H 0.275 0.725 42 H 0.085 0.915 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.708 -15.494 -14.137 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.301 6.301 4 C -0.013 4.013 5 C -0.015 4.015 6 O -0.280 6.280 7 C -0.005 4.005 8 C -0.040 4.040 9 N -0.408 5.408 10 C 0.424 3.576 11 O -0.461 6.461 12 N -0.383 5.383 13 C 0.115 3.885 14 H 0.109 0.891 15 C -0.573 4.573 16 H 0.114 0.886 17 C -0.112 4.112 18 N -0.495 5.495 19 Si 0.707 3.293 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.182 1.182 23 C 0.385 3.615 24 F -0.174 7.174 25 F -0.166 7.166 26 F -0.173 7.173 27 C 0.009 3.991 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.233 0.767 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.455 -14.694 -13.609 21.739 hybrid contribution 0.121 -0.856 -0.063 0.867 sum -8.334 -15.550 -13.672 22.320 Atomic orbital electron populations 1.21738 0.93702 1.02143 1.03320 1.22457 0.95759 0.83886 0.99894 1.87979 1.20523 1.26175 1.95381 1.22524 0.82213 0.95651 1.00897 1.22604 0.98589 0.92535 0.87749 1.88012 1.80139 1.21970 1.37887 1.24232 0.95964 0.81927 0.98370 1.23709 0.96257 0.87455 0.96603 1.48842 1.11877 1.14832 1.65267 1.15835 0.84519 0.79980 0.77313 1.90901 1.43801 1.49962 1.61484 1.46805 1.07447 1.20563 1.63486 1.20159 1.01827 0.78521 0.87945 0.89146 1.20821 0.98818 1.27548 1.10139 0.88615 1.24899 0.96323 0.95032 0.94927 1.69876 1.26308 1.34799 1.18503 0.86757 0.83928 0.80910 0.77748 1.19755 1.21261 1.18213 1.21536 0.72969 0.83576 0.83401 1.93150 1.48183 1.95974 1.80075 1.93103 1.91942 1.48179 1.83372 1.93072 1.61109 1.90387 1.72699 1.23060 0.89611 0.92046 0.94389 0.91642 0.91890 0.91207 0.93619 0.93376 0.91885 0.92302 0.92168 0.91404 0.88202 0.89300 0.89853 0.76738 0.91534 0.89621 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.06 0.41 6.66 37.16 0.25 0.66 16 3 O -0.38 -3.83 10.31 -40.08 -0.41 -4.24 16 4 C 0.06 0.50 6.32 37.16 0.23 0.73 16 5 C 0.06 0.51 6.17 37.16 0.23 0.74 16 6 O -0.36 -4.05 10.33 -40.08 -0.41 -4.47 16 7 C 0.05 0.61 4.48 -25.81 -0.12 0.49 16 8 C 0.08 1.08 8.29 -2.84 -0.02 1.05 16 9 N -0.67 -11.34 3.61 -184.18 -0.67 -12.00 16 10 C 0.72 15.46 8.15 -86.92 -0.71 14.75 16 11 O -0.58 -14.44 15.64 5.29 0.08 -14.36 16 12 N -0.73 -15.72 3.20 -59.81 -0.19 -15.91 16 13 C 0.22 5.22 1.41 -69.08 -0.10 5.12 16 14 H 0.09 2.31 6.29 -51.93 -0.33 1.98 16 15 C -0.54 -13.91 8.64 -34.44 -0.30 -14.21 16 16 H 0.10 2.69 7.91 -52.49 -0.42 2.27 16 17 C 0.10 2.57 5.46 -17.82 -0.10 2.48 16 18 N -0.86 -23.78 13.96 55.43 0.77 -23.01 16 19 Si 0.88 20.96 26.13 -169.99 -4.44 16.52 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.26 -6.43 6.55 56.52 0.37 -6.06 16 23 C 0.44 10.02 2.79 37.16 0.10 10.12 16 24 F -0.19 -4.39 15.84 2.25 0.04 -4.35 16 25 F -0.18 -4.19 16.83 2.25 0.04 -4.15 16 26 F -0.19 -4.18 16.97 2.25 0.04 -4.15 16 27 C 0.13 1.83 8.67 -2.97 -0.03 1.80 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.96 7.89 -51.93 -0.41 0.55 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.40 7.95 8.20 -40.82 -0.33 7.62 16 41 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 375.37 15.07 5.66 5.66 Total: -1.00 -32.20 375.37 -5.82 -38.02 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.15 Total: 3.32 kcal Atomic # 6 Polarization: 23.30 SS G_CDS: -0.17 Total: 23.13 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.08 Total: -50.93 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.74 Total: -23.07 kcal Atomic # 9 Polarization: -12.76 SS G_CDS: 0.11 Total: -12.65 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.44 Total: 16.52 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.20 -5.82 -38.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932907858.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.789 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds