Wall clock time and date at job start Sat Apr 11 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.46730 * 2 1 4 4 C 1.42905 * 113.99815 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46957 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.47247 * 65.00168 * 5 4 3 7 7 C 1.42894 * 114.00142 * 179.97438 * 6 5 4 8 8 C 1.53942 * 113.74123 * 248.74022 * 7 6 5 9 9 N 1.47813 * 86.03924 * 222.08448 * 8 7 6 10 10 C 1.34778 * 134.45766 * 204.64603 * 9 8 7 11 11 O 1.21591 * 119.99582 * 179.86350 * 10 9 8 12 12 N 1.34770 * 120.00197 * 359.86855 * 10 9 8 13 13 C 1.46497 * 119.99889 * 180.02562 * 12 10 9 14 14 H 1.08991 * 109.47652 * 34.99945 * 13 12 10 15 15 C 1.50707 * 109.46957 * 154.99932 * 13 12 10 16 16 H 1.07997 * 120.00120 * 116.79147 * 15 13 12 17 17 C 1.37870 * 119.99782 * 296.79136 * 15 13 12 18 18 N 1.31513 * 120.00151 * 173.99948 * 17 15 13 19 19 Si 1.86799 * 120.00312 * 353.99625 * 17 15 13 20 20 H 1.48501 * 109.47074 * 85.15618 * 19 17 15 21 21 H 1.48502 * 109.47535 * 205.15568 * 19 17 15 22 22 H 1.48505 * 109.47124 * 325.16281 * 19 17 15 23 23 C 1.53002 * 109.47161 * 274.99481 * 13 12 10 24 24 F 1.39897 * 109.46751 * 65.25447 * 23 13 12 25 25 F 1.39894 * 109.47267 * 185.25700 * 23 13 12 26 26 F 1.39898 * 109.47024 * 305.25787 * 23 13 12 27 27 C 1.47576 * 91.04792 * 24.54943 * 9 8 7 28 28 H 1.08992 * 109.47407 * 300.00267 * 1 2 3 29 29 H 1.09000 * 109.47145 * 60.00769 * 1 2 3 30 30 H 1.09000 * 109.47022 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47407 * 239.99733 * 2 1 3 32 32 H 1.09004 * 109.46707 * 119.99394 * 2 1 3 33 33 H 1.08998 * 109.46908 * 59.99946 * 4 3 2 34 34 H 1.09000 * 109.46935 * 299.99873 * 4 3 2 35 35 H 1.09000 * 109.47162 * 305.00022 * 5 4 3 36 36 H 1.09003 * 109.46728 * 185.00115 * 5 4 3 37 37 H 1.08998 * 112.94251 * 20.33408 * 7 6 5 38 38 H 1.08997 * 113.77197 * 336.35032 * 8 7 6 39 39 H 1.09001 * 113.76904 * 107.74860 * 8 7 6 40 40 H 0.96997 * 120.00092 * 359.97438 * 12 10 9 41 41 H 0.97002 * 120.00646 * 180.02562 * 18 17 15 42 42 H 1.08999 * 113.77329 * 221.15425 * 27 9 8 43 43 H 1.09006 * 113.87312 * 89.76676 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8253 2.9385 -0.0001 6 8 3.3974 3.5462 1.2204 7 6 3.7190 4.9348 1.3222 8 6 4.7894 5.2468 2.3838 9 7 3.9449 6.4044 2.7469 10 6 4.1776 7.5958 3.3324 11 8 3.2617 8.3762 3.5078 12 7 5.4253 7.9223 3.7236 13 6 5.6780 9.2171 4.3606 14 1 4.8218 9.4924 4.9763 15 6 6.9082 9.1197 5.2257 16 1 7.7786 9.7162 4.9958 17 6 6.9224 8.2690 6.3105 18 7 8.0318 8.0947 6.9950 19 14 5.3660 7.3640 6.8083 20 1 5.2446 6.1147 6.0148 21 1 5.4293 7.0282 8.2535 22 1 4.1867 8.2295 6.5523 23 6 5.8951 10.2817 3.2834 24 9 4.7128 10.4571 2.5562 25 9 6.2542 11.4908 3.8884 26 9 6.9166 9.8705 2.4205 27 6 2.7460 5.7330 2.2087 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8340 0.9765 -0.8891 34 1 3.8333 0.9768 0.8908 35 1 3.3498 3.4410 -0.8424 36 1 4.9082 3.0255 -0.0893 37 1 3.9121 5.3983 0.3548 38 1 4.8630 4.4936 3.1681 39 1 5.7571 5.5220 1.9642 40 1 6.1558 7.2996 3.5840 41 1 8.0420 7.4959 7.7581 42 1 2.0851 6.3954 1.6497 43 1 2.2165 5.1225 2.9403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932907858.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:57 Heat of formation + Delta-G solvation = -258.049767 kcal Electronic energy + Delta-G solvation = -30608.984949 eV Core-core repulsion = 25661.309883 eV Total energy + Delta-G solvation = -4947.675066 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.89772 -48.40301 -48.37873 -41.53449 -39.84980 -38.94971 -37.32775 -36.59830 -34.45216 -32.69926 -31.61085 -30.14557 -28.72433 -27.23959 -26.95784 -23.65968 -23.64644 -23.42986 -22.60011 -20.91133 -20.04330 -19.35885 -19.02948 -18.69645 -18.37104 -18.31687 -17.79248 -17.28400 -16.91255 -16.51816 -16.23614 -15.87329 -15.77370 -15.33847 -15.27956 -14.92335 -14.84960 -14.75948 -14.70057 -14.57928 -14.52611 -14.40953 -14.23068 -14.00539 -13.67554 -13.60105 -13.24734 -13.04798 -12.76612 -12.55699 -12.41273 -12.28045 -12.12372 -12.09346 -11.90934 -11.82992 -11.41460 -11.01798 -10.55332 -10.50211 -10.33748 -9.67149 -8.57125 -6.73582 1.16497 1.28259 1.33331 1.42368 1.84524 2.11487 2.20179 2.55324 2.73530 2.79713 3.01035 3.17459 3.31992 3.36532 3.57150 3.86350 3.99263 4.17512 4.22083 4.28874 4.33968 4.39368 4.43300 4.51642 4.52336 4.57666 4.58466 4.61304 4.70429 4.73415 4.91464 4.93510 4.94424 5.05864 5.28425 5.37580 5.83445 6.14178 6.22104 6.34966 6.40059 6.94453 6.97147 7.48199 8.55043 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015661 B = 0.002733 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.483120 B =10241.182903 C =11030.997674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.411 6.411 4 C 0.059 3.941 5 C 0.055 3.945 6 O -0.378 6.378 7 C 0.079 3.921 8 C 0.080 3.920 9 N -0.670 5.670 10 C 0.716 3.284 11 O -0.623 6.623 12 N -0.725 5.725 13 C 0.228 3.772 14 H 0.073 0.927 15 C -0.537 4.537 16 H 0.069 0.931 17 C 0.069 3.931 18 N -0.896 5.896 19 Si 0.929 3.071 20 H -0.257 1.257 21 H -0.280 1.280 22 H -0.277 1.277 23 C 0.445 3.555 24 F -0.191 7.191 25 F -0.185 7.185 26 F -0.184 7.184 27 C 0.122 3.878 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.406 0.594 41 H 0.281 0.719 42 H 0.088 0.912 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.958 -17.576 -15.669 24.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.331 6.331 4 C -0.017 4.017 5 C -0.021 4.021 6 O -0.296 6.296 7 C 0.020 3.980 8 C -0.043 4.043 9 N -0.412 5.412 10 C 0.419 3.581 11 O -0.504 6.504 12 N -0.381 5.381 13 C 0.122 3.878 14 H 0.091 0.909 15 C -0.575 4.575 16 H 0.088 0.912 17 C -0.138 4.138 18 N -0.531 5.531 19 Si 0.754 3.246 20 H -0.182 1.182 21 H -0.206 1.206 22 H -0.202 1.202 23 C 0.390 3.610 24 F -0.172 7.172 25 F -0.167 7.167 26 F -0.166 7.166 27 C 0.000 4.000 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.140 0.860 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.243 0.757 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.691 -16.850 -15.176 24.285 hybrid contribution 0.173 -0.266 0.329 0.456 sum -8.518 -17.116 -14.847 24.206 Atomic orbital electron populations 1.21767 0.93526 1.03165 1.02440 1.22617 0.96023 0.83094 1.00817 1.87939 1.21843 1.27715 1.95598 1.22686 0.81386 0.95596 1.02021 1.22878 1.00087 0.92581 0.86585 1.87995 1.80396 1.21587 1.39617 1.23923 0.93503 0.82212 0.98356 1.24001 0.97301 0.85668 0.97282 1.48899 1.14455 1.14294 1.63536 1.15852 0.83599 0.81163 0.77460 1.90868 1.44649 1.51793 1.63093 1.46304 1.08214 1.19942 1.63661 1.19775 1.00034 0.79814 0.88139 0.90895 1.20733 0.98568 1.27276 1.10956 0.91239 1.25345 0.98041 0.95573 0.94812 1.69927 1.27730 1.36027 1.19378 0.86007 0.80410 0.80189 0.77965 1.18188 1.20584 1.20222 1.21323 0.73139 0.83287 0.83293 1.93154 1.48159 1.95944 1.79958 1.93100 1.91956 1.48197 1.83448 1.93081 1.60793 1.90316 1.72392 1.23325 0.89494 0.92214 0.94992 0.92987 0.92249 0.89283 0.91972 0.93089 0.89379 0.92481 0.91662 0.89046 0.86023 0.89022 0.87957 0.75704 0.90959 0.89402 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 71.98 0.74 -1.06 16 2 C 0.05 0.65 6.66 71.98 0.48 1.13 16 3 O -0.41 -7.55 10.31 -144.34 -1.49 -9.03 16 4 C 0.06 0.77 6.32 71.98 0.45 1.23 16 5 C 0.05 0.73 6.17 71.98 0.44 1.17 16 6 O -0.38 -7.42 10.33 -144.34 -1.49 -8.91 16 7 C 0.08 1.54 4.48 31.25 0.14 1.68 16 8 C 0.08 1.83 8.29 86.44 0.72 2.55 16 9 N -0.67 -21.62 3.61 -858.70 -3.10 -24.72 16 10 C 0.72 30.02 8.15 179.06 1.46 31.48 16 11 O -0.62 -30.69 15.64 -4.00 -0.06 -30.75 16 12 N -0.72 -30.66 3.20 -461.42 -1.48 -32.14 16 13 C 0.23 10.83 1.41 44.25 0.06 10.89 16 14 H 0.07 3.77 6.29 -2.39 -0.02 3.75 16 15 C -0.54 -28.10 8.64 25.60 0.22 -27.87 16 16 H 0.07 3.97 7.91 -2.91 -0.02 3.95 16 17 C 0.07 3.62 5.46 84.65 0.46 4.08 16 18 N -0.90 -49.44 13.96 21.44 0.30 -49.14 16 19 Si 0.93 42.99 26.13 68.60 1.79 44.78 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.28 -13.67 6.55 99.48 0.65 -13.02 16 23 C 0.45 20.10 2.79 71.98 0.20 20.31 16 24 F -0.19 -8.59 15.84 44.97 0.71 -7.88 16 25 F -0.19 -8.43 16.83 44.97 0.76 -7.67 16 26 F -0.18 -7.91 16.97 44.97 0.76 -7.15 16 27 C 0.12 3.16 8.67 86.49 0.75 3.91 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.12 1.88 7.89 -2.39 -0.02 1.86 16 38 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.41 15.68 8.20 -92.71 -0.76 14.92 16 41 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 42 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -68.80 375.37 3.06 -65.74 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.23 Total: 17.38 kcal Atomic # 6 Polarization: 43.37 SS G_CDS: 6.13 Total: 49.50 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -4.28 Total: -106.00 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -3.04 Total: -48.70 kcal Atomic # 9 Polarization: -24.93 SS G_CDS: 2.23 Total: -22.70 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.79 Total: 44.78 kcal Total: -68.80 3.06 -65.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932907858.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.311 kcal (2) G-P(sol) polarization free energy of solvation -68.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds