Wall clock time and date at job start Sat Apr 11 2020 06:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42901 * 109.47526 * 2 1 4 4 C 1.42890 * 114.00564 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.52014 * 29.87608 * 4 3 2 6 6 C 1.53099 * 109.52528 * 269.69158 * 4 3 2 7 7 O 1.42896 * 109.41518 * 182.48348 * 6 4 3 8 8 C 1.42901 * 114.09838 * 61.15949 * 7 6 4 9 9 C 1.53091 * 109.41338 * 298.83350 * 8 7 6 10 10 C 1.53172 * 109.52705 * 150.00220 * 4 3 2 11 11 H 1.09004 * 109.54448 * 56.93260 * 10 4 3 12 12 N 1.46498 * 109.54402 * 296.75795 * 10 4 3 13 13 C 1.34776 * 120.00117 * 154.99964 * 12 10 4 14 14 O 1.21582 * 120.00182 * 359.97438 * 13 12 10 15 15 N 1.34779 * 119.99760 * 180.02562 * 13 12 10 16 16 C 1.46505 * 120.00077 * 179.97438 * 15 13 12 17 17 H 1.09011 * 109.46680 * 34.99533 * 16 15 13 18 18 C 1.50698 * 109.47424 * 154.99676 * 16 15 13 19 19 H 1.08003 * 119.99648 * 5.39265 * 18 16 15 20 20 C 1.37869 * 120.00048 * 185.39143 * 18 16 15 21 21 N 1.31517 * 120.00239 * 20.92086 * 20 18 16 22 22 Si 1.86803 * 120.00099 * 200.91511 * 20 18 16 23 23 H 1.48506 * 109.47152 * 270.00104 * 22 20 18 24 24 H 1.48500 * 109.46974 * 30.00102 * 22 20 18 25 25 H 1.48497 * 109.47102 * 150.00284 * 22 20 18 26 26 C 1.53003 * 109.47068 * 275.00143 * 16 15 13 27 27 F 1.39899 * 109.46702 * 294.83158 * 26 16 15 28 28 F 1.39899 * 109.46955 * 54.82938 * 26 16 15 29 29 F 1.39893 * 109.47069 * 174.83082 * 26 16 15 30 30 H 1.09006 * 109.47336 * 299.99950 * 1 2 3 31 31 H 1.09003 * 109.47553 * 59.99807 * 1 2 3 32 32 H 1.08999 * 109.47267 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47358 * 240.00585 * 2 1 3 34 34 H 1.09000 * 109.47070 * 120.00262 * 2 1 3 35 35 H 1.09004 * 109.47846 * 302.46497 * 6 4 3 36 36 H 1.08997 * 109.47912 * 62.49335 * 6 4 3 37 37 H 1.08997 * 109.48607 * 58.82270 * 8 7 6 38 38 H 1.09004 * 109.48187 * 178.85867 * 8 7 6 39 39 H 1.08998 * 109.52709 * 297.70799 * 9 8 7 40 40 H 1.09004 * 109.52090 * 177.51288 * 9 8 7 41 41 H 0.97002 * 119.99724 * 334.99143 * 12 10 4 42 42 H 0.97002 * 120.00081 * 359.97438 * 15 13 12 43 43 H 0.97002 * 119.99398 * 355.52187 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8640 0.6009 -0.5127 6 6 3.9409 1.5081 1.4421 7 8 5.3596 1.6790 1.4389 8 6 5.8001 2.8889 0.8190 9 6 5.3649 2.8963 -0.6487 10 6 3.8421 2.7470 -0.7223 11 1 3.3669 3.6023 -0.2420 12 7 3.4237 2.6776 -2.1246 13 6 3.2073 3.8115 -2.8202 14 8 3.3589 4.8921 -2.2838 15 7 2.8219 3.7476 -4.1101 16 6 2.5861 4.9802 -4.8661 17 1 3.2921 5.7453 -4.5429 18 6 2.7750 4.7113 -6.3368 19 1 2.9578 3.7046 -6.6826 20 6 2.7144 5.7505 -7.2409 21 7 2.9049 6.9870 -6.8353 22 14 2.3619 5.4022 -9.0420 23 1 3.6410 5.1783 -9.7625 24 1 1.5116 4.1899 -9.1546 25 1 1.6529 6.5615 -9.6408 26 6 1.1571 5.4665 -4.6159 27 9 0.2504 4.5373 -5.1371 28 9 0.9454 5.6033 -3.2398 29 9 0.9691 6.7033 -5.2420 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 3.4752 2.3437 1.9647 36 1 3.6881 0.5764 1.9482 37 1 5.3588 3.7426 1.3334 38 1 6.8868 2.9519 0.8762 39 1 5.8380 2.0663 -1.1732 40 1 5.6613 3.8376 -1.1118 41 1 3.3026 1.8155 -2.5524 42 1 2.7006 2.8855 -4.5379 43 1 3.0234 7.1748 -5.8911 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932911457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:11 Heat of formation + Delta-G solvation = -303.897070 kcal Electronic energy + Delta-G solvation = -31952.583874 eV Core-core repulsion = 27002.920720 eV Total energy + Delta-G solvation = -4949.663154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.80324 -48.33468 -48.28192 -41.54421 -40.34674 -38.51081 -37.00817 -35.98022 -34.62469 -32.74249 -32.39483 -30.58598 -29.70467 -26.50918 -25.81143 -24.56921 -23.77519 -23.53076 -21.98905 -21.65869 -20.20719 -19.40101 -19.07248 -18.92502 -18.53929 -18.01403 -17.56027 -17.35075 -16.52480 -16.46549 -16.07227 -15.74339 -15.66370 -15.47738 -15.28522 -15.18459 -15.06132 -14.78582 -14.72907 -14.58703 -14.49072 -14.33475 -14.24052 -14.14080 -13.44007 -13.30830 -13.20353 -13.00337 -12.63020 -12.56870 -12.53921 -12.23683 -12.07374 -11.90001 -11.59628 -11.44585 -11.38918 -11.05786 -10.47212 -10.44564 -10.30543 -9.92227 -8.84785 -6.61134 1.51185 1.58176 1.64967 1.84355 1.98245 2.27054 2.38683 2.49316 2.92059 2.92528 3.10841 3.43769 3.48418 3.59574 3.73383 3.75102 3.86148 3.92332 4.08084 4.16316 4.23944 4.29398 4.47909 4.48325 4.58996 4.60153 4.67702 4.78998 4.82899 4.93104 5.01603 5.04888 5.25708 5.29930 5.32051 5.43357 5.92630 5.96705 6.06934 6.27087 6.30564 7.03252 7.18444 7.53822 8.50761 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015523 B = 0.003387 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.374622 B = 8263.854978 C = 8955.352771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.395 6.395 4 C 0.060 3.940 5 H 0.094 0.906 6 C 0.047 3.953 7 O -0.381 6.381 8 C 0.064 3.936 9 C -0.159 4.159 10 C 0.164 3.836 11 H 0.064 0.936 12 N -0.719 5.719 13 C 0.699 3.301 14 O -0.628 6.628 15 N -0.715 5.715 16 C 0.259 3.741 17 H 0.044 0.956 18 C -0.639 4.639 19 H 0.086 0.914 20 C -0.006 4.006 21 N -0.885 5.885 22 Si 1.117 2.883 23 H -0.266 1.266 24 H -0.263 1.263 25 H -0.286 1.286 26 C 0.414 3.586 27 F -0.188 7.188 28 F -0.206 7.206 29 F -0.190 7.190 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.122 0.878 37 H 0.055 0.945 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.408 0.592 42 H 0.411 0.589 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.589 -17.336 12.969 21.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.315 6.315 4 C 0.002 3.998 5 H 0.112 0.888 6 C -0.031 4.031 7 O -0.300 6.300 8 C -0.013 4.013 9 C -0.198 4.198 10 C 0.058 3.942 11 H 0.082 0.918 12 N -0.374 5.374 13 C 0.399 3.601 14 O -0.508 6.508 15 N -0.369 5.369 16 C 0.150 3.850 17 H 0.061 0.939 18 C -0.675 4.675 19 H 0.104 0.896 20 C -0.212 4.212 21 N -0.516 5.516 22 Si 0.937 3.063 23 H -0.191 1.191 24 H -0.187 1.187 25 H -0.212 1.212 26 C 0.357 3.643 27 F -0.170 7.170 28 F -0.187 7.187 29 F -0.172 7.172 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.073 0.927 38 H 0.139 0.861 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.244 0.756 42 H 0.247 0.753 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.572 -15.605 12.107 19.813 hybrid contribution -0.537 -0.614 1.122 1.387 sum 1.035 -16.219 13.229 20.955 Atomic orbital electron populations 1.21773 0.93622 1.03332 1.02215 1.22786 0.95866 0.82507 1.01573 1.88025 1.19816 1.28514 1.95109 1.22986 0.82342 0.97314 0.97208 0.88845 1.23088 0.81233 1.04005 0.94771 1.87944 1.21364 1.41558 1.79098 1.22696 1.01703 0.86794 0.90145 1.22613 0.94233 1.03670 0.99251 1.20989 0.94731 0.98303 0.80130 0.91782 1.44787 1.73688 1.06769 1.12189 1.16193 0.77656 0.84803 0.81402 1.90872 1.60636 1.29144 1.70174 1.44828 1.72399 1.09609 1.10030 1.19206 0.85594 0.85876 0.94306 0.93864 1.21946 1.58483 0.98669 0.88357 0.89574 1.27423 0.91124 0.91914 1.10751 1.70843 1.39623 1.22508 1.18617 0.82958 0.77962 0.76351 0.69008 1.19062 1.18688 1.21191 1.23143 0.93979 0.75096 0.72052 1.93023 1.70958 1.66131 1.86871 1.93096 1.96303 1.95872 1.33466 1.93115 1.96211 1.45190 1.82691 0.92402 0.93516 0.88783 0.92108 0.91254 0.92474 0.86035 0.92713 0.86067 0.89315 0.91578 0.75584 0.75295 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 10.28 71.98 0.74 -1.57 16 2 C 0.05 0.72 6.47 71.98 0.47 1.19 16 3 O -0.39 -8.70 9.92 -148.98 -1.48 -10.18 16 4 C 0.06 1.17 2.31 30.68 0.07 1.24 16 5 H 0.09 1.44 7.79 -2.38 -0.02 1.42 16 6 C 0.05 0.79 6.47 72.02 0.47 1.26 16 7 O -0.38 -7.22 10.76 -148.98 -1.60 -8.82 16 8 C 0.06 1.18 6.84 72.01 0.49 1.67 16 9 C -0.16 -3.60 5.72 30.69 0.18 -3.43 16 10 C 0.16 4.30 2.22 45.11 0.10 4.40 16 11 H 0.06 2.13 7.57 -2.38 -0.02 2.11 16 12 N -0.72 -20.97 5.01 -457.25 -2.29 -23.26 16 13 C 0.70 28.23 7.96 179.05 1.42 29.66 16 14 O -0.63 -30.91 14.62 -3.97 -0.06 -30.97 16 15 N -0.71 -29.36 5.03 -461.39 -2.32 -31.68 16 16 C 0.26 13.04 1.92 44.24 0.09 13.13 16 17 H 0.04 2.51 6.61 -2.38 -0.02 2.49 16 18 C -0.64 -32.58 8.21 25.60 0.21 -32.37 16 19 H 0.09 4.09 7.80 -2.91 -0.02 4.06 16 20 C -0.01 -0.32 4.71 84.65 0.40 0.08 16 21 N -0.88 -51.35 12.44 21.44 0.27 -51.08 16 22 Si 1.12 46.26 29.95 68.60 2.05 48.32 16 23 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 24 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 25 H -0.29 -12.12 7.11 99.48 0.71 -11.42 16 26 C 0.41 21.23 2.82 71.98 0.20 21.43 16 27 F -0.19 -9.10 16.87 44.97 0.76 -8.34 16 28 F -0.21 -10.60 15.54 44.97 0.70 -9.90 16 29 F -0.19 -10.52 14.13 44.97 0.64 -9.88 16 30 H 0.06 0.92 8.14 -2.38 -0.02 0.91 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 0.77 8.09 -2.39 -0.02 0.75 16 34 H 0.07 0.74 7.96 -2.39 -0.02 0.72 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.12 1.49 7.96 -2.39 -0.02 1.47 16 37 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.41 9.26 8.62 -92.71 -0.80 8.46 16 42 H 0.41 14.14 8.54 -92.71 -0.79 13.35 16 43 H 0.26 15.87 6.04 -92.71 -0.56 15.31 16 Total: -1.00 -70.15 363.66 1.18 -68.97 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: -0.32 Total: 30.12 kcal Atomic # 6 Polarization: 31.87 SS G_CDS: 4.83 Total: 36.70 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -4.35 Total: -106.02 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -3.14 Total: -49.97 kcal Atomic # 9 Polarization: -30.21 SS G_CDS: 2.09 Total: -28.12 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.05 Total: 48.32 kcal Total: -70.15 1.18 -68.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932911457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -234.924 kcal (2) G-P(sol) polarization free energy of solvation -70.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -305.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -303.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds