Wall clock time and date at job start Sat Apr 11 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42887 * 109.47415 * 2 1 4 4 C 1.42903 * 114.00145 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.57408 * 29.84428 * 4 3 2 6 6 C 1.53096 * 109.51982 * 269.68540 * 4 3 2 7 7 O 1.42904 * 109.41085 * 182.48370 * 6 4 3 8 8 C 1.42904 * 114.09578 * 61.16273 * 7 6 4 9 9 C 1.53085 * 109.41365 * 298.83510 * 8 7 6 10 10 C 1.53176 * 109.52240 * 150.00349 * 4 3 2 11 11 H 1.09008 * 109.61615 * 296.79465 * 10 4 3 12 12 N 1.46503 * 109.54703 * 57.01629 * 10 4 3 13 13 C 1.34771 * 119.99947 * 204.55422 * 12 10 4 14 14 O 1.21589 * 120.00440 * 0.02562 * 13 12 10 15 15 N 1.34774 * 119.99903 * 180.02562 * 13 12 10 16 16 C 1.46500 * 120.00355 * 180.02562 * 15 13 12 17 17 H 1.09005 * 109.46806 * 325.00442 * 16 15 13 18 18 C 1.50697 * 109.47553 * 205.00113 * 16 15 13 19 19 H 1.07999 * 120.00250 * 245.24146 * 18 16 15 20 20 C 1.37875 * 119.99724 * 65.23690 * 18 16 15 21 21 N 1.31515 * 119.99887 * 185.21935 * 20 18 16 22 22 Si 1.86794 * 120.00279 * 5.22299 * 20 18 16 23 23 H 1.48504 * 109.47108 * 265.22226 * 22 20 18 24 24 H 1.48499 * 109.47225 * 145.22177 * 22 20 18 25 25 H 1.48502 * 109.47214 * 25.21946 * 22 20 18 26 26 C 1.53004 * 109.46831 * 84.99760 * 16 15 13 27 27 F 1.39899 * 109.46978 * 174.96904 * 26 16 15 28 28 F 1.39895 * 109.47451 * 294.97401 * 26 16 15 29 29 F 1.39902 * 109.47015 * 54.97667 * 26 16 15 30 30 H 1.08993 * 109.47203 * 299.99868 * 1 2 3 31 31 H 1.09002 * 109.46796 * 60.00090 * 1 2 3 32 32 H 1.08998 * 109.47177 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47035 * 239.99656 * 2 1 3 34 34 H 1.09004 * 109.46795 * 120.00691 * 2 1 3 35 35 H 1.09001 * 109.48137 * 62.50305 * 6 4 3 36 36 H 1.08997 * 109.49092 * 302.47291 * 6 4 3 37 37 H 1.09005 * 109.47695 * 178.85584 * 8 7 6 38 38 H 1.08999 * 109.49341 * 58.82847 * 8 7 6 39 39 H 1.08995 * 109.52945 * 297.70553 * 9 8 7 40 40 H 1.09003 * 109.57530 * 177.54717 * 9 8 7 41 41 H 0.97002 * 119.99563 * 24.56099 * 12 10 4 42 42 H 0.97000 * 120.00179 * 0.02562 * 15 13 12 43 43 H 0.96997 * 120.00405 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3471 0.0000 4 6 3.4310 1.4599 0.0006 5 1 3.8655 0.6007 -0.5102 6 6 3.9397 1.5084 1.4437 7 8 5.3585 1.6793 1.4417 8 6 5.7995 2.8890 0.8217 9 6 5.3655 2.8960 -0.6463 10 6 3.8428 2.7467 -0.7212 11 1 3.5323 2.6962 -1.7649 12 7 3.2052 3.8966 -0.0752 13 6 2.9979 5.0315 -0.7720 14 8 3.3396 5.1009 -1.9368 15 7 2.4118 6.0896 -0.1775 16 6 2.1859 7.3231 -0.9350 17 1 3.0067 7.4744 -1.6361 18 6 2.1154 8.4905 0.0154 19 1 1.1934 9.0419 0.1260 20 6 3.2280 8.8545 0.7439 21 7 3.1399 9.8059 1.6475 22 14 4.8604 7.9964 0.4473 23 1 5.0194 6.8851 1.4195 24 1 5.9695 8.9685 0.6211 25 1 4.8903 7.4532 -0.9345 26 6 0.8694 7.2136 -1.7069 27 9 0.5963 8.4319 -2.3381 28 9 0.9755 6.2034 -2.6689 29 9 -0.1673 6.9056 -0.8195 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5140 0.8900 35 1 3.6865 0.5769 1.9499 36 1 3.4736 2.3441 1.9658 37 1 6.8862 2.9520 0.8799 38 1 5.3579 3.7430 1.3354 39 1 5.8391 2.0658 -1.1702 40 1 5.6625 3.8364 -1.1105 41 1 2.9324 3.8412 0.8540 42 1 2.1395 6.0345 0.7518 43 1 3.9226 10.0623 2.1598 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932911458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:13 Heat of formation + Delta-G solvation = -299.846140 kcal Electronic energy + Delta-G solvation = -32451.044721 eV Core-core repulsion = 27501.557229 eV Total energy + Delta-G solvation = -4949.487492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.87810 -48.38465 -48.36401 -41.67820 -40.26153 -38.48559 -36.88649 -35.81544 -34.45913 -32.77051 -32.45881 -30.76802 -30.05154 -26.93797 -26.05334 -24.59046 -23.56541 -23.50094 -22.26281 -20.79364 -20.22034 -19.50104 -19.20426 -18.68695 -18.34580 -18.11235 -17.53886 -17.24297 -16.92791 -16.57315 -16.32275 -16.01977 -15.75429 -15.53097 -15.28059 -15.24169 -14.85838 -14.82830 -14.60861 -14.56756 -14.50344 -14.45436 -14.32719 -13.77233 -13.64909 -13.49457 -13.27919 -13.01020 -12.97997 -12.57490 -12.50092 -12.23079 -12.06391 -11.99504 -11.89079 -11.50444 -11.36768 -11.07780 -10.97765 -10.35661 -10.22723 -9.87123 -8.53528 -6.71196 1.22828 1.32658 1.45776 1.60063 1.94139 2.16623 2.27581 2.40855 2.82659 2.93529 3.16523 3.25955 3.39056 3.52215 3.66486 3.70374 3.85967 3.93014 4.01323 4.18870 4.26129 4.30842 4.49231 4.49943 4.57748 4.65825 4.72683 4.77082 4.84878 4.94622 4.95274 4.99547 5.04423 5.27434 5.42947 5.48848 5.83069 5.96521 6.05079 6.28370 6.42847 6.99642 7.08029 7.57780 8.58810 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011297 B = 0.004867 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.886456 B = 5751.354394 C = 7263.128780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.391 6.391 4 C 0.061 3.939 5 H 0.102 0.898 6 C 0.040 3.960 7 O -0.379 6.379 8 C 0.059 3.941 9 C -0.161 4.161 10 C 0.162 3.838 11 H 0.077 0.923 12 N -0.725 5.725 13 C 0.694 3.306 14 O -0.620 6.620 15 N -0.730 5.730 16 C 0.231 3.769 17 H 0.078 0.922 18 C -0.539 4.539 19 H 0.064 0.936 20 C 0.064 3.936 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.253 1.253 24 H -0.284 1.284 25 H -0.266 1.266 26 C 0.443 3.557 27 F -0.187 7.187 28 F -0.191 7.191 29 F -0.187 7.187 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.119 0.881 36 H 0.055 0.945 37 H 0.114 0.886 38 H 0.042 0.958 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.403 0.597 42 H 0.406 0.594 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.297 -20.923 0.822 21.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.311 6.311 4 C 0.002 3.998 5 H 0.120 0.880 6 C -0.037 4.037 7 O -0.298 6.298 8 C -0.018 4.018 9 C -0.200 4.200 10 C 0.056 3.944 11 H 0.095 0.905 12 N -0.382 5.382 13 C 0.395 3.605 14 O -0.500 6.500 15 N -0.386 5.386 16 C 0.125 3.875 17 H 0.096 0.904 18 C -0.577 4.577 19 H 0.082 0.918 20 C -0.142 4.142 21 N -0.536 5.536 22 Si 0.756 3.244 23 H -0.177 1.177 24 H -0.210 1.210 25 H -0.191 1.191 26 C 0.387 3.613 27 F -0.169 7.169 28 F -0.172 7.172 29 F -0.168 7.168 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.137 0.863 36 H 0.073 0.927 37 H 0.132 0.868 38 H 0.060 0.940 39 H 0.122 0.878 40 H 0.084 0.916 41 H 0.240 0.760 42 H 0.243 0.757 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.655 -20.739 -0.024 20.909 hybrid contribution -0.094 0.284 0.364 0.471 sum 2.561 -20.455 0.340 20.618 Atomic orbital electron populations 1.21764 0.93519 1.03277 1.02293 1.22773 0.95930 0.82627 1.01395 1.88017 1.19656 1.28324 1.95078 1.22935 0.82485 0.97268 0.97120 0.88001 1.23122 0.81317 1.03695 0.95609 1.87951 1.21431 1.41213 1.79168 1.22647 1.01224 0.86551 0.91344 1.22590 0.94668 1.04095 0.98636 1.21024 0.92203 0.83456 0.97712 0.90468 1.45049 1.65681 1.12070 1.15379 1.16385 0.78480 0.80869 0.84796 1.90860 1.58993 1.83471 1.16716 1.46339 1.63901 1.12478 1.15918 1.19744 0.89434 0.84888 0.93423 0.90435 1.20739 1.00102 1.12097 1.24734 0.91794 1.25447 1.01460 0.94469 0.92841 1.69950 1.32178 1.29602 1.21871 0.85927 0.79389 0.79093 0.80014 1.17739 1.20994 1.19103 1.21445 0.89131 0.72652 0.78069 1.93096 1.94825 1.45547 1.83402 1.93152 1.96389 1.61590 1.66115 1.93082 1.62171 1.92970 1.68623 0.92387 0.93365 0.88889 0.92347 0.91373 0.86286 0.92710 0.86764 0.93966 0.87785 0.91550 0.76048 0.75746 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 10.28 71.98 0.74 -1.50 16 2 C 0.05 0.73 6.47 71.98 0.47 1.19 16 3 O -0.39 -8.43 9.80 -148.98 -1.46 -9.89 16 4 C 0.06 1.17 2.53 30.69 0.08 1.25 16 5 H 0.10 1.57 7.79 -2.39 -0.02 1.55 16 6 C 0.04 0.70 6.29 72.01 0.45 1.15 16 7 O -0.38 -7.72 10.77 -148.98 -1.60 -9.33 16 8 C 0.06 1.25 6.68 72.01 0.48 1.73 16 9 C -0.16 -3.69 5.80 30.68 0.18 -3.51 16 10 C 0.16 4.16 2.53 45.11 0.11 4.27 16 11 H 0.08 2.34 7.59 -2.38 -0.02 2.32 16 12 N -0.73 -21.91 4.22 -457.23 -1.93 -23.84 16 13 C 0.69 27.31 7.99 179.06 1.43 28.74 16 14 O -0.62 -28.45 14.58 -4.00 -0.06 -28.51 16 15 N -0.73 -29.83 3.33 -461.41 -1.54 -31.37 16 16 C 0.23 10.80 1.41 44.25 0.06 10.86 16 17 H 0.08 3.89 6.03 -2.38 -0.01 3.88 16 18 C -0.54 -28.06 8.62 25.60 0.22 -27.84 16 19 H 0.06 3.69 7.95 -2.91 -0.02 3.66 16 20 C 0.06 3.32 5.47 84.65 0.46 3.78 16 21 N -0.90 -49.80 13.96 21.45 0.30 -49.50 16 22 Si 0.93 41.34 26.42 68.60 1.81 43.15 16 23 H -0.25 -10.30 7.11 99.48 0.71 -9.60 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.27 -12.41 6.25 99.48 0.62 -11.79 16 26 C 0.44 20.10 2.79 71.98 0.20 20.30 16 27 F -0.19 -8.58 16.86 44.97 0.76 -7.82 16 28 F -0.19 -8.65 15.83 44.97 0.71 -7.93 16 29 F -0.19 -8.22 16.97 44.97 0.76 -7.46 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 0.76 8.09 -2.39 -0.02 0.74 16 34 H 0.07 0.75 7.96 -2.39 -0.02 0.73 16 35 H 0.12 1.57 7.96 -2.39 -0.02 1.55 16 36 H 0.05 1.02 6.72 -2.39 -0.02 1.01 16 37 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.04 1.01 7.75 -2.39 -0.02 1.00 16 39 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.40 10.61 7.09 -92.71 -0.66 9.96 16 42 H 0.41 15.17 8.61 -92.71 -0.80 14.37 16 43 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -64.72 360.72 2.17 -62.55 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: -0.47 Total: 29.53 kcal Atomic # 6 Polarization: 35.53 SS G_CDS: 4.89 Total: 40.41 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -3.17 Total: -104.70 kcal Atomic # 8 Polarization: -44.61 SS G_CDS: -3.12 Total: -47.73 kcal Atomic # 9 Polarization: -25.45 SS G_CDS: 2.23 Total: -23.22 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 1.81 Total: 43.15 kcal Total: -64.72 2.17 -62.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932911458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -237.300 kcal (2) G-P(sol) polarization free energy of solvation -64.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -302.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -299.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds