Wall clock time and date at job start Sat Apr 11 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42893 * 109.47357 * 2 1 4 4 C 1.42903 * 113.99991 * 180.02562 * 3 2 1 5 5 H 1.08997 * 112.84669 * 18.80276 * 4 3 2 6 6 C 1.53777 * 113.68575 * 247.53105 * 4 3 2 7 7 C 1.53787 * 87.08077 * 220.00750 * 6 4 3 8 8 H 1.08997 * 113.68810 * 270.87512 * 7 6 4 9 9 N 1.46495 * 113.61359 * 139.98060 * 7 6 4 10 10 C 1.34784 * 119.99850 * 107.50596 * 9 7 6 11 11 O 1.21587 * 119.99512 * 359.97438 * 10 9 7 12 12 N 1.34777 * 120.00131 * 180.02562 * 10 9 7 13 13 C 1.46496 * 120.00037 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.47054 * 324.99327 * 13 12 10 15 15 C 1.50697 * 109.47016 * 205.00057 * 13 12 10 16 16 H 1.07998 * 120.00039 * 359.97438 * 15 13 12 17 17 C 1.37881 * 120.00021 * 180.02562 * 15 13 12 18 18 N 1.31519 * 119.99891 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00032 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47338 * 59.99500 * 19 17 15 21 21 H 1.48496 * 109.47117 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46756 * 299.99232 * 19 17 15 23 23 C 1.52997 * 109.47294 * 84.99596 * 13 12 10 24 24 F 1.39905 * 109.47157 * 179.97438 * 23 13 12 25 25 F 1.39900 * 109.47010 * 60.00333 * 23 13 12 26 26 F 1.39897 * 109.47422 * 300.00024 * 23 13 12 27 27 C 1.53781 * 87.08014 * 25.43590 * 7 6 4 28 28 H 1.08994 * 113.61501 * 219.93722 * 27 7 6 29 29 O 1.42900 * 113.61802 * 89.11344 * 27 7 6 30 30 C 1.42894 * 114.00039 * 149.99904 * 29 27 7 31 31 H 1.09001 * 109.46717 * 299.99978 * 1 2 3 32 32 H 1.08997 * 109.46840 * 59.99814 * 1 2 3 33 33 H 1.09002 * 109.47278 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46719 * 239.99468 * 2 1 3 35 35 H 1.08997 * 109.46840 * 120.00186 * 2 1 3 36 36 H 1.09005 * 113.61185 * 105.46375 * 6 4 3 37 37 H 1.08999 * 113.61759 * 334.55554 * 6 4 3 38 38 H 0.97004 * 120.00600 * 287.50628 * 9 7 6 39 39 H 0.97005 * 119.99645 * 359.97438 * 12 10 9 40 40 H 0.97001 * 120.00022 * 180.02562 * 18 17 15 41 41 H 1.09005 * 109.47204 * 60.00635 * 30 29 27 42 42 H 1.09008 * 109.46896 * 180.02562 * 30 29 27 43 43 H 1.08999 * 109.47352 * 300.00324 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.9278 0.5455 -0.3247 6 6 4.0049 2.0450 1.3006 7 6 4.9916 2.8299 0.4199 8 1 5.9156 2.2912 0.2103 9 7 5.2243 4.2017 0.8785 10 6 6.3983 4.5300 1.4533 11 8 7.2640 3.6876 1.5916 12 7 6.6123 5.7919 1.8756 13 6 7.8886 6.1489 2.4999 14 1 8.2546 5.3061 3.0861 15 6 7.6909 7.3399 3.4018 16 1 6.7124 7.7865 3.4998 17 6 8.7593 7.8601 4.1010 18 7 9.9509 7.3166 3.9812 19 14 8.5141 9.3359 5.2196 20 1 7.5249 8.9986 6.2746 21 1 9.8078 9.6979 5.8523 22 1 8.0144 10.4843 4.4214 23 6 8.9084 6.4957 1.4134 24 9 10.1271 6.8372 2.0096 25 9 8.4386 7.5775 0.6610 26 9 9.0920 5.3900 0.5761 27 6 3.9485 2.7252 -0.7052 28 1 4.3825 2.5334 -1.6865 29 8 3.0072 3.8003 -0.7152 30 6 2.5056 4.1216 -2.0141 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 4.4845 1.3028 1.9388 37 1 3.3025 2.6793 1.8413 38 1 4.5334 4.8737 0.7684 39 1 5.9214 6.4639 1.7655 40 1 10.7025 7.6823 4.4734 41 1 2.0034 3.2506 -2.4353 42 1 1.7981 4.9472 -1.9363 43 1 3.3330 4.4124 -2.6614 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932911884.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:19 Heat of formation + Delta-G solvation = -227.606631 kcal Electronic energy + Delta-G solvation = -31244.240840 eV Core-core repulsion = 26297.885888 eV Total energy + Delta-G solvation = -4946.354952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.27577 -45.92843 -45.54574 -40.40258 -38.85569 -37.33714 -35.78871 -34.49369 -32.94933 -32.27017 -30.99012 -28.14652 -27.00966 -25.00226 -24.57483 -24.16563 -23.00712 -21.55375 -20.13528 -19.95217 -18.33538 -17.62242 -16.86991 -16.74213 -16.54633 -16.41406 -15.99906 -15.86430 -15.65339 -15.01691 -14.92439 -14.62437 -14.35869 -13.93348 -13.66226 -13.47138 -13.18076 -13.06727 -12.84545 -12.75987 -12.47133 -12.32985 -12.22129 -12.03728 -11.91020 -11.81030 -11.75013 -11.62507 -11.54289 -11.11266 -11.04965 -10.91588 -10.83224 -10.71315 -10.35991 -9.95707 -9.62414 -9.48472 -9.37330 -8.70033 -8.64021 -8.10071 -6.19316 -4.42875 3.02604 3.22936 3.27575 3.29509 3.52307 3.63059 3.84085 4.23259 4.32779 4.45218 4.62644 4.74836 4.78438 4.85112 4.91461 4.96855 4.98057 5.04134 5.09586 5.22562 5.28988 5.37055 5.46527 5.54475 5.62180 5.81141 5.82925 5.90345 5.93763 5.95037 6.12607 6.28706 6.76242 6.92148 6.99292 7.18926 7.28167 7.44724 7.67311 7.78289 8.54227 8.74259 9.19972 9.31532 10.72235 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019566 B = 0.002713 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.698519 B =10316.471267 C =10643.198357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.359 6.359 4 C 0.046 3.954 5 H 0.095 0.905 6 C -0.162 4.162 7 C 0.151 3.849 8 H 0.125 0.875 9 N -0.732 5.732 10 C 0.699 3.301 11 O -0.588 6.588 12 N -0.726 5.726 13 C 0.263 3.737 14 H 0.085 0.915 15 C -0.551 4.551 16 H 0.077 0.923 17 C 0.065 3.935 18 N -0.840 5.840 19 Si 0.915 3.085 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.416 3.584 24 F -0.138 7.138 25 F -0.210 7.210 26 F -0.217 7.217 27 C 0.062 3.938 28 H 0.081 0.919 29 O -0.351 6.351 30 C 0.035 3.965 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.401 0.599 39 H 0.395 0.605 40 H 0.268 0.732 41 H 0.042 0.958 42 H 0.086 0.914 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.391 -10.434 -9.720 20.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.277 6.277 4 C -0.013 4.013 5 H 0.112 0.888 6 C -0.202 4.202 7 C 0.043 3.957 8 H 0.143 0.857 9 N -0.388 5.388 10 C 0.399 3.601 11 O -0.465 6.465 12 N -0.378 5.378 13 C 0.157 3.843 14 H 0.103 0.897 15 C -0.589 4.589 16 H 0.095 0.905 17 C -0.144 4.144 18 N -0.474 5.474 19 Si 0.742 3.258 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.199 1.199 23 C 0.359 3.641 24 F -0.119 7.119 25 F -0.192 7.192 26 F -0.199 7.199 27 C 0.002 3.998 28 H 0.098 0.902 29 O -0.268 6.268 30 C -0.062 4.062 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.236 0.764 39 H 0.228 0.772 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.105 0.895 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.496 -10.916 -9.360 20.418 hybrid contribution -0.293 1.060 -0.098 1.104 sum -14.789 -9.856 -9.458 20.132 Atomic orbital electron populations 1.21729 0.93871 1.02033 1.03130 1.22537 0.95605 0.84425 0.99888 1.88033 1.19669 1.25478 1.94542 1.24097 0.81978 0.97517 0.97724 0.88772 1.23978 0.98679 1.00191 0.97319 1.22245 0.96748 0.83869 0.92827 0.85734 1.44769 1.16946 1.11308 1.65737 1.16119 0.82176 0.83470 0.78336 1.90897 1.44385 1.49107 1.62158 1.45258 1.19256 1.08932 1.64375 1.19577 0.77779 0.99630 0.87338 0.89747 1.20854 0.96914 1.14137 1.26955 0.90541 1.25078 0.94644 0.97960 0.96722 1.70400 0.99869 1.39807 1.37280 0.86272 0.77657 0.81658 0.80237 1.19805 1.20915 1.19856 1.23196 0.85269 0.72926 0.82694 1.93401 1.45731 1.91712 1.81049 1.92982 1.89096 1.58072 1.79093 1.93066 1.96125 1.55285 1.75417 1.24020 0.89821 0.87293 0.98679 0.90150 1.87826 1.59393 1.50804 1.28801 1.22802 0.98417 1.00366 0.84588 0.91784 0.92005 0.91309 0.93642 0.93366 0.90714 0.88417 0.76365 0.77193 0.92112 0.93934 0.89531 0.94074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.05 0.42 6.50 37.16 0.24 0.67 16 3 O -0.36 -3.93 9.97 -50.28 -0.50 -4.44 16 4 C 0.05 0.47 4.25 -25.92 -0.11 0.36 16 5 H 0.09 0.76 7.87 -51.93 -0.41 0.35 16 6 C -0.16 -1.96 7.65 -25.92 -0.20 -2.16 16 7 C 0.15 2.01 4.19 -67.12 -0.28 1.73 16 8 H 0.12 1.77 7.46 -51.93 -0.39 1.38 16 9 N -0.73 -11.46 5.33 -57.88 -0.31 -11.76 16 10 C 0.70 14.31 8.10 -86.91 -0.70 13.61 16 11 O -0.59 -14.18 14.52 5.29 0.08 -14.10 16 12 N -0.73 -15.31 4.99 -59.82 -0.30 -15.60 16 13 C 0.26 6.67 2.21 -69.09 -0.15 6.52 16 14 H 0.08 2.40 7.58 -51.93 -0.39 2.01 16 15 C -0.55 -14.26 8.47 -34.44 -0.29 -14.56 16 16 H 0.08 1.87 7.74 -52.49 -0.41 1.46 16 17 C 0.06 1.70 5.20 -17.82 -0.09 1.61 16 18 N -0.84 -23.28 9.50 55.43 0.53 -22.76 16 19 Si 0.92 20.30 29.54 -169.99 -5.02 15.28 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 C 0.42 10.87 2.81 37.16 0.10 10.97 16 24 F -0.14 -3.87 12.91 2.25 0.03 -3.84 16 25 F -0.21 -5.29 16.94 2.25 0.04 -5.26 16 26 F -0.22 -5.64 15.68 2.25 0.04 -5.61 16 27 C 0.06 0.68 4.26 -25.92 -0.11 0.57 16 28 H 0.08 0.75 7.87 -51.93 -0.41 0.34 16 29 O -0.35 -4.10 9.17 -50.28 -0.46 -4.56 16 30 C 0.03 0.31 10.85 101.05 1.10 1.40 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.40 5.61 7.81 -40.82 -0.32 5.29 16 39 H 0.39 7.24 8.55 -40.82 -0.35 6.90 16 40 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 0.67 8.14 -51.92 -0.42 0.24 16 43 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 369.23 15.07 5.56 5.56 Total: -1.00 -31.86 369.23 -6.47 -38.33 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.03 Total: 8.70 kcal Atomic # 6 Polarization: 20.17 SS G_CDS: -0.12 Total: 20.06 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.08 Total: -50.13 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.89 Total: -23.10 kcal Atomic # 9 Polarization: -14.81 SS G_CDS: 0.10 Total: -14.71 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.86 -6.47 -38.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932911884.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.279 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds