Wall clock time and date at job start Sat Apr 11 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42893 * 109.47357 * 2 1 4 4 C 1.42903 * 113.99991 * 180.02562 * 3 2 1 5 5 H 1.08997 * 112.84669 * 18.80276 * 4 3 2 6 6 C 1.53777 * 113.68575 * 247.53105 * 4 3 2 7 7 C 1.53787 * 87.08077 * 220.00750 * 6 4 3 8 8 H 1.08997 * 113.68810 * 270.87512 * 7 6 4 9 9 N 1.46495 * 113.61359 * 139.98060 * 7 6 4 10 10 C 1.34784 * 119.99850 * 107.50596 * 9 7 6 11 11 O 1.21587 * 119.99512 * 359.97438 * 10 9 7 12 12 N 1.34777 * 120.00131 * 180.02562 * 10 9 7 13 13 C 1.46496 * 120.00037 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.47054 * 324.99327 * 13 12 10 15 15 C 1.50697 * 109.47016 * 205.00057 * 13 12 10 16 16 H 1.07998 * 120.00039 * 359.97438 * 15 13 12 17 17 C 1.37881 * 120.00021 * 180.02562 * 15 13 12 18 18 N 1.31519 * 119.99891 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00032 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47338 * 59.99500 * 19 17 15 21 21 H 1.48496 * 109.47117 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46756 * 299.99232 * 19 17 15 23 23 C 1.52997 * 109.47294 * 84.99596 * 13 12 10 24 24 F 1.39905 * 109.47157 * 179.97438 * 23 13 12 25 25 F 1.39900 * 109.47010 * 60.00333 * 23 13 12 26 26 F 1.39897 * 109.47422 * 300.00024 * 23 13 12 27 27 C 1.53781 * 87.08014 * 25.43590 * 7 6 4 28 28 H 1.08994 * 113.61501 * 219.93722 * 27 7 6 29 29 O 1.42900 * 113.61802 * 89.11344 * 27 7 6 30 30 C 1.42894 * 114.00039 * 149.99904 * 29 27 7 31 31 H 1.09001 * 109.46717 * 299.99978 * 1 2 3 32 32 H 1.08997 * 109.46840 * 59.99814 * 1 2 3 33 33 H 1.09002 * 109.47278 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46719 * 239.99468 * 2 1 3 35 35 H 1.08997 * 109.46840 * 120.00186 * 2 1 3 36 36 H 1.09005 * 113.61185 * 105.46375 * 6 4 3 37 37 H 1.08999 * 113.61759 * 334.55554 * 6 4 3 38 38 H 0.97004 * 120.00600 * 287.50628 * 9 7 6 39 39 H 0.97005 * 119.99645 * 359.97438 * 12 10 9 40 40 H 0.97001 * 120.00022 * 180.02562 * 18 17 15 41 41 H 1.09005 * 109.47204 * 60.00635 * 30 29 27 42 42 H 1.09008 * 109.46896 * 180.02562 * 30 29 27 43 43 H 1.08999 * 109.47352 * 300.00324 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.9278 0.5455 -0.3247 6 6 4.0049 2.0450 1.3006 7 6 4.9916 2.8299 0.4199 8 1 5.9156 2.2912 0.2103 9 7 5.2243 4.2017 0.8785 10 6 6.3983 4.5300 1.4533 11 8 7.2640 3.6876 1.5916 12 7 6.6123 5.7919 1.8756 13 6 7.8886 6.1489 2.4999 14 1 8.2546 5.3061 3.0861 15 6 7.6909 7.3399 3.4018 16 1 6.7124 7.7865 3.4998 17 6 8.7593 7.8601 4.1010 18 7 9.9509 7.3166 3.9812 19 14 8.5141 9.3359 5.2196 20 1 7.5249 8.9986 6.2746 21 1 9.8078 9.6979 5.8523 22 1 8.0144 10.4843 4.4214 23 6 8.9084 6.4957 1.4134 24 9 10.1271 6.8372 2.0096 25 9 8.4386 7.5775 0.6610 26 9 9.0920 5.3900 0.5761 27 6 3.9485 2.7252 -0.7052 28 1 4.3825 2.5334 -1.6865 29 8 3.0072 3.8003 -0.7152 30 6 2.5056 4.1216 -2.0141 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 4.4845 1.3028 1.9388 37 1 3.3025 2.6793 1.8413 38 1 4.5334 4.8737 0.7684 39 1 5.9214 6.4639 1.7655 40 1 10.7025 7.6823 4.4734 41 1 2.0034 3.2506 -2.4353 42 1 1.7981 4.9472 -1.9363 43 1 3.3330 4.4124 -2.6614 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932911884.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:18 Heat of formation + Delta-G solvation = -250.029699 kcal Electronic energy + Delta-G solvation = -31245.213177 eV Core-core repulsion = 26297.885888 eV Total energy + Delta-G solvation = -4947.327289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.38320 -48.01645 -47.69542 -41.50314 -40.28285 -38.12462 -36.89583 -36.24006 -34.59981 -33.83564 -31.70413 -30.00531 -27.74401 -26.57881 -25.88334 -25.34029 -23.69025 -23.30112 -21.81975 -20.95520 -19.98189 -18.89695 -18.76880 -18.57900 -18.45354 -17.74463 -17.21269 -16.83039 -16.67607 -16.57310 -16.14584 -15.95827 -15.81715 -15.10333 -14.96424 -14.85760 -14.70649 -14.54420 -14.43085 -14.27106 -14.23439 -13.99811 -13.94541 -13.83723 -13.37761 -13.03752 -12.89004 -12.74848 -12.61237 -12.58804 -12.34581 -12.30464 -12.19860 -11.84214 -11.71863 -11.57545 -11.23854 -10.73819 -10.66052 -10.25981 -10.14059 -9.70716 -8.19364 -6.50173 1.47409 1.50292 1.57946 1.70993 2.12516 2.37707 2.58103 2.61605 2.86098 2.96194 3.40635 3.44281 3.58409 3.82017 3.84380 3.91324 4.02890 4.19695 4.22547 4.24047 4.35463 4.43742 4.54364 4.57370 4.64379 4.77169 4.88123 4.90878 4.93155 5.01049 5.07337 5.11687 5.30666 5.45733 5.52354 5.59000 5.67214 6.15902 6.17303 6.43950 6.54741 7.17635 7.22580 7.67409 8.73201 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019566 B = 0.002713 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.698519 B =10316.471267 C =10643.198357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.377 6.377 4 C 0.058 3.942 5 H 0.120 0.880 6 C -0.161 4.161 7 C 0.134 3.866 8 H 0.115 0.885 9 N -0.713 5.713 10 C 0.696 3.304 11 O -0.627 6.627 12 N -0.721 5.721 13 C 0.272 3.728 14 H 0.047 0.953 15 C -0.563 4.563 16 H 0.091 0.909 17 C 0.015 3.985 18 N -0.874 5.874 19 Si 0.984 3.016 20 H -0.263 1.263 21 H -0.284 1.284 22 H -0.266 1.266 23 C 0.413 3.587 24 F -0.151 7.151 25 F -0.204 7.204 26 F -0.218 7.218 27 C 0.070 3.930 28 H 0.100 0.900 29 O -0.371 6.371 30 C 0.031 3.969 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.411 0.589 39 H 0.409 0.591 40 H 0.269 0.731 41 H 0.050 0.950 42 H 0.096 0.904 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.312 -10.323 -10.392 22.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.296 6.296 4 C -0.002 4.002 5 H 0.138 0.862 6 C -0.201 4.201 7 C 0.028 3.972 8 H 0.133 0.867 9 N -0.368 5.368 10 C 0.396 3.604 11 O -0.508 6.508 12 N -0.375 5.375 13 C 0.164 3.836 14 H 0.064 0.936 15 C -0.599 4.599 16 H 0.109 0.891 17 C -0.190 4.190 18 N -0.508 5.508 19 Si 0.807 3.193 20 H -0.188 1.188 21 H -0.209 1.209 22 H -0.191 1.191 23 C 0.357 3.643 24 F -0.132 7.132 25 F -0.186 7.186 26 F -0.200 7.200 27 C 0.010 3.990 28 H 0.118 0.882 29 O -0.289 6.289 30 C -0.065 4.065 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.248 0.752 39 H 0.245 0.755 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.114 0.886 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.498 -10.813 -10.068 22.147 hybrid contribution 0.247 0.956 0.059 0.989 sum -16.251 -9.857 -10.009 21.481 Atomic orbital electron populations 1.21745 0.93163 1.03168 1.02506 1.22754 0.96254 0.83323 1.00842 1.88011 1.19748 1.27332 1.94505 1.24037 0.82151 0.98138 0.95826 0.86241 1.23915 0.98094 0.99920 0.98153 1.22523 0.97338 0.82443 0.94927 0.86691 1.44640 1.15339 1.12689 1.64164 1.16273 0.83016 0.82736 0.78333 1.90867 1.46111 1.50084 1.63765 1.45015 1.18327 1.09787 1.64365 1.19156 0.79121 0.98278 0.87072 0.93567 1.21195 0.97629 1.14148 1.26966 0.89126 1.25997 0.94262 1.00735 0.98028 1.70532 1.00716 1.41275 1.38310 0.85208 0.77638 0.78101 0.78351 1.18779 1.20923 1.19052 1.23332 0.85058 0.73027 0.82924 1.93374 1.46618 1.91846 1.81356 1.92980 1.88947 1.57734 1.78908 1.93058 1.96137 1.55381 1.75445 1.23953 0.88922 0.87484 0.98632 0.88175 1.87793 1.59501 1.51042 1.30547 1.22950 0.98879 1.01097 0.83556 0.92813 0.92192 0.89325 0.92015 0.93029 0.90757 0.89789 0.75176 0.75540 0.92145 0.93155 0.88559 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 10.28 71.98 0.74 -1.04 16 2 C 0.04 0.63 6.50 71.98 0.47 1.09 16 3 O -0.38 -7.55 9.97 -134.60 -1.34 -8.89 16 4 C 0.06 1.06 4.25 31.12 0.13 1.20 16 5 H 0.12 1.60 7.87 -2.39 -0.02 1.58 16 6 C -0.16 -3.79 7.65 31.12 0.24 -3.55 16 7 C 0.13 3.49 4.19 45.52 0.19 3.69 16 8 H 0.12 3.25 7.46 -2.39 -0.02 3.23 16 9 N -0.71 -22.01 5.33 -455.28 -2.43 -24.43 16 10 C 0.70 28.74 8.10 179.05 1.45 30.19 16 11 O -0.63 -31.01 14.52 -3.99 -0.06 -31.07 16 12 N -0.72 -30.48 4.99 -461.42 -2.30 -32.78 16 13 C 0.27 13.99 2.21 44.24 0.10 14.09 16 14 H 0.05 2.75 7.58 -2.39 -0.02 2.73 16 15 C -0.56 -28.96 8.47 25.60 0.22 -28.75 16 16 H 0.09 4.30 7.74 -2.91 -0.02 4.28 16 17 C 0.02 0.79 5.20 84.65 0.44 1.23 16 18 N -0.87 -49.05 9.50 21.45 0.20 -48.85 16 19 Si 0.98 41.02 29.54 68.60 2.03 43.04 16 20 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 21 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 22 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 23 C 0.41 21.88 2.81 71.98 0.20 22.08 16 24 F -0.15 -8.63 12.91 44.97 0.58 -8.05 16 25 F -0.20 -10.19 16.94 44.97 0.76 -9.43 16 26 F -0.22 -11.53 15.68 44.97 0.71 -10.83 16 27 C 0.07 1.41 4.26 31.12 0.13 1.54 16 28 H 0.10 1.62 7.87 -2.39 -0.02 1.60 16 29 O -0.37 -8.01 9.17 -134.60 -1.23 -9.24 16 30 C 0.03 0.48 10.85 113.37 1.23 1.71 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.41 11.10 7.81 -92.70 -0.72 10.38 16 39 H 0.41 14.70 8.55 -92.70 -0.79 13.90 16 40 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 41 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -68.70 369.23 2.00 -66.71 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: -0.46 Total: 30.35 kcal Atomic # 6 Polarization: 37.94 SS G_CDS: 5.54 Total: 43.47 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -4.52 Total: -106.06 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -2.64 Total: -49.20 kcal Atomic # 9 Polarization: -30.35 SS G_CDS: 2.05 Total: -28.31 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Total: -68.70 2.00 -66.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932911884.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.322 kcal (2) G-P(sol) polarization free energy of solvation -68.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds