Wall clock time and date at job start Sat Apr 11 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42906 * 109.47162 * 2 1 4 4 C 1.42901 * 113.99822 * 179.97438 * 3 2 1 5 5 H 1.08994 * 112.90974 * 18.75125 * 4 3 2 6 6 C 1.53776 * 113.61753 * 247.49465 * 4 3 2 7 7 C 1.53778 * 87.08489 * 220.02493 * 6 4 3 8 8 H 1.09005 * 113.61213 * 270.88327 * 7 6 4 9 9 N 1.46496 * 113.61821 * 139.98291 * 7 6 4 10 10 C 1.34769 * 120.00245 * 107.49907 * 9 7 6 11 11 O 1.21592 * 120.00481 * 0.02562 * 10 9 7 12 12 N 1.34781 * 120.00400 * 180.02562 * 10 9 7 13 13 C 1.46500 * 120.00542 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.46847 * 35.00019 * 13 12 10 15 15 C 1.50690 * 109.47313 * 154.99955 * 13 12 10 16 16 H 1.08001 * 119.99950 * 359.97438 * 15 13 12 17 17 C 1.37878 * 120.00420 * 180.02562 * 15 13 12 18 18 N 1.31517 * 119.99408 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 120.00510 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46887 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47266 * 119.99563 * 19 17 15 22 22 H 1.48497 * 109.47258 * 239.99519 * 19 17 15 23 23 C 1.53001 * 109.46948 * 275.00245 * 13 12 10 24 24 F 1.39899 * 109.47141 * 59.99971 * 23 13 12 25 25 F 1.39897 * 109.46812 * 179.97438 * 23 13 12 26 26 F 1.39898 * 109.46988 * 299.99427 * 23 13 12 27 27 C 1.53780 * 87.08128 * 25.43103 * 7 6 4 28 28 H 1.08999 * 113.69091 * 89.13154 * 27 7 6 29 29 O 1.42905 * 113.61449 * 220.02443 * 27 7 6 30 30 C 1.42899 * 113.99778 * 207.00395 * 29 27 7 31 31 H 1.09004 * 109.46925 * 59.99994 * 1 2 3 32 32 H 1.08998 * 109.47715 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47321 * 300.00387 * 1 2 3 34 34 H 1.09002 * 109.47639 * 240.00027 * 2 1 3 35 35 H 1.09002 * 109.47229 * 119.99569 * 2 1 3 36 36 H 1.09008 * 113.61196 * 334.57427 * 6 4 3 37 37 H 1.09000 * 113.61572 * 105.47248 * 6 4 3 38 38 H 0.97005 * 119.99678 * 287.49525 * 9 7 6 39 39 H 0.97005 * 119.99523 * 359.97438 * 12 10 9 40 40 H 0.96999 * 120.00040 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.46926 * 179.97438 * 30 29 27 42 42 H 1.08997 * 109.47171 * 299.99768 * 30 29 27 43 43 H 1.08997 * 109.47442 * 59.99964 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9290 0.5458 -0.3218 6 6 4.0019 2.0465 1.3024 7 6 4.9896 2.8315 0.4232 8 1 5.9139 2.2920 0.2163 9 7 5.2205 4.2037 0.8811 10 6 6.3931 4.5333 1.4580 11 8 7.2596 3.6918 1.5979 12 7 6.6054 5.7957 1.8798 13 6 7.8802 6.1541 2.5064 14 1 8.6868 5.5910 2.0369 15 6 8.1292 7.6298 2.3302 16 1 7.4100 8.2397 1.8038 17 6 9.2757 8.2013 2.8401 18 7 10.1517 7.4585 3.4808 19 14 9.5847 10.0305 2.6212 20 1 8.4556 10.6368 1.8709 21 1 9.6966 10.6766 3.9535 22 1 10.8470 10.2323 1.8656 23 6 7.8267 5.8204 3.9986 24 9 7.5956 4.4504 4.1621 25 9 9.0443 6.1622 4.5968 26 9 6.7915 6.5432 4.6012 27 6 3.9489 2.7251 -0.7040 28 1 3.2299 3.5443 -0.7149 29 8 4.5205 2.4713 -1.9889 30 6 3.7345 2.9539 -3.0803 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.2978 2.6807 1.8413 37 1 4.4807 1.3052 1.9421 38 1 4.5294 4.8752 0.7691 39 1 5.9143 6.4671 1.7679 40 1 10.9581 7.8605 3.8399 41 1 4.2365 2.7226 -4.0198 42 1 2.7558 2.4743 -3.0633 43 1 3.6117 4.0332 -2.9904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932911886.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:22 Heat of formation + Delta-G solvation = -255.620489 kcal Electronic energy + Delta-G solvation = -31068.881737 eV Core-core repulsion = 26121.312013 eV Total energy + Delta-G solvation = -4947.569724 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.144 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.38488 -48.01736 -47.69914 -41.52656 -40.31658 -38.25138 -37.09482 -36.31592 -34.62674 -33.86791 -31.74508 -30.02585 -27.97442 -26.58582 -25.54730 -25.40060 -23.69441 -23.33858 -21.88507 -21.24758 -20.01197 -18.90137 -18.78329 -18.59733 -18.45341 -17.93552 -17.36138 -16.94099 -16.72016 -16.52103 -16.23081 -15.94193 -15.80570 -15.24808 -15.03459 -14.92581 -14.63032 -14.46502 -14.41749 -14.26920 -14.06864 -14.00369 -13.92071 -13.84740 -13.42221 -13.11049 -12.94585 -12.71179 -12.69000 -12.63372 -12.40476 -12.24479 -12.19046 -12.08643 -11.77918 -11.53429 -11.29747 -10.93646 -10.68602 -10.43977 -10.18096 -9.75941 -8.19828 -6.50422 1.46852 1.48001 1.58724 1.65328 2.10912 2.36919 2.55345 2.59086 2.96010 2.98994 3.32121 3.40799 3.45817 3.76361 3.79901 3.81878 3.90584 4.19843 4.21362 4.22316 4.33723 4.42898 4.52290 4.55083 4.57526 4.74157 4.81579 4.87026 4.90600 4.93867 5.04034 5.05819 5.29454 5.44615 5.49360 5.55354 5.67079 6.08841 6.11446 6.31587 6.55105 7.15972 7.21378 7.64879 8.73290 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019073 B = 0.002731 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.710995 B =10249.701494 C =11023.585275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.384 6.384 4 C 0.063 3.937 5 H 0.104 0.896 6 C -0.161 4.161 7 C 0.143 3.857 8 H 0.100 0.900 9 N -0.717 5.717 10 C 0.698 3.302 11 O -0.626 6.626 12 N -0.719 5.719 13 C 0.271 3.729 14 H 0.046 0.954 15 C -0.559 4.559 16 H 0.093 0.907 17 C 0.013 3.987 18 N -0.875 5.875 19 Si 0.984 3.016 20 H -0.255 1.255 21 H -0.281 1.281 22 H -0.278 1.278 23 C 0.413 3.587 24 F -0.219 7.219 25 F -0.151 7.151 26 F -0.203 7.203 27 C 0.070 3.930 28 H 0.114 0.886 29 O -0.394 6.394 30 C 0.025 3.975 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.412 0.588 39 H 0.411 0.589 40 H 0.268 0.732 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.550 -9.089 -9.615 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.303 6.303 4 C 0.004 3.996 5 H 0.122 0.878 6 C -0.200 4.200 7 C 0.036 3.964 8 H 0.118 0.882 9 N -0.373 5.373 10 C 0.398 3.602 11 O -0.507 6.507 12 N -0.373 5.373 13 C 0.163 3.837 14 H 0.063 0.937 15 C -0.596 4.596 16 H 0.111 0.889 17 C -0.192 4.192 18 N -0.509 5.509 19 Si 0.808 3.192 20 H -0.178 1.178 21 H -0.207 1.207 22 H -0.204 1.204 23 C 0.356 3.644 24 F -0.201 7.201 25 F -0.133 7.133 26 F -0.185 7.185 27 C 0.010 3.990 28 H 0.132 0.868 29 O -0.313 6.313 30 C -0.071 4.071 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.249 0.751 39 H 0.247 0.753 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.072 0.928 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.532 -9.799 -9.402 22.177 hybrid contribution -0.023 1.052 0.483 1.158 sum -17.555 -8.747 -8.919 21.546 Atomic orbital electron populations 1.21761 0.92700 1.03372 1.02765 1.22746 0.96424 0.82888 1.00866 1.87894 1.19778 1.28094 1.94583 1.23891 0.81707 0.98689 0.95350 0.87801 1.23709 0.98379 1.00491 0.97456 1.22223 0.98192 0.82174 0.93761 0.88198 1.44732 1.15697 1.12329 1.64512 1.16238 0.83020 0.82687 0.78286 1.90888 1.45980 1.50160 1.63636 1.44986 1.18905 1.09617 1.63784 1.19175 0.83534 0.98366 0.82655 0.93669 1.21250 1.07563 0.90791 1.40002 0.88908 1.26015 0.95422 1.04261 0.93470 1.70548 1.09936 1.37446 1.32997 0.85094 0.78622 0.77532 0.77952 1.17807 1.20720 1.20384 1.23338 0.73661 0.71931 0.95447 1.93063 1.94750 1.35327 1.96927 1.93372 1.42842 1.90974 1.86064 1.92980 1.60551 1.78508 1.86458 1.24500 0.94133 0.97843 0.82483 0.86845 1.87951 1.48466 1.80431 1.14454 1.22990 0.95949 0.98850 0.89321 0.92052 0.89314 0.92314 0.92474 0.92757 0.88028 0.90010 0.75144 0.75318 0.92187 0.88565 0.92844 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.28 71.98 0.74 -0.91 16 2 C 0.05 0.66 6.50 71.98 0.47 1.13 16 3 O -0.38 -7.28 10.35 -148.98 -1.54 -8.82 16 4 C 0.06 1.23 4.14 31.12 0.13 1.36 16 5 H 0.10 1.92 7.87 -2.39 -0.02 1.90 16 6 C -0.16 -3.59 7.71 31.12 0.24 -3.35 16 7 C 0.14 3.81 4.07 45.52 0.19 4.00 16 8 H 0.10 3.26 7.47 -2.38 -0.02 3.24 16 9 N -0.72 -20.71 5.36 -455.30 -2.44 -23.15 16 10 C 0.70 28.24 8.10 179.06 1.45 29.69 16 11 O -0.63 -31.27 14.51 -4.01 -0.06 -31.33 16 12 N -0.72 -29.42 4.99 -461.42 -2.30 -31.72 16 13 C 0.27 13.77 2.21 44.24 0.10 13.87 16 14 H 0.05 2.67 7.58 -2.39 -0.02 2.65 16 15 C -0.56 -28.31 8.46 25.60 0.22 -28.10 16 16 H 0.09 4.31 7.74 -2.91 -0.02 4.28 16 17 C 0.01 0.70 5.20 84.65 0.44 1.14 16 18 N -0.88 -48.90 9.50 21.45 0.20 -48.70 16 19 Si 0.98 40.61 29.54 68.60 2.03 42.63 16 20 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 21 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 23 C 0.41 21.72 2.81 71.98 0.20 21.93 16 24 F -0.22 -11.57 15.67 44.97 0.70 -10.86 16 25 F -0.15 -8.65 12.91 44.97 0.58 -8.07 16 26 F -0.20 -10.03 16.94 44.97 0.76 -9.26 16 27 C 0.07 1.46 3.87 31.12 0.12 1.58 16 28 H 0.11 2.01 7.87 -2.39 -0.02 1.99 16 29 O -0.39 -9.09 10.71 -148.98 -1.60 -10.68 16 30 C 0.02 0.39 10.86 113.37 1.23 1.62 16 31 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.41 8.88 8.74 -92.70 -0.81 8.07 16 39 H 0.41 13.83 8.55 -92.70 -0.79 13.04 16 40 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 41 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -69.25 371.58 1.32 -67.93 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: -0.54 Total: 28.08 kcal Atomic # 6 Polarization: 38.43 SS G_CDS: 5.52 Total: 43.95 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -4.54 Total: -103.56 kcal Atomic # 8 Polarization: -47.63 SS G_CDS: -3.20 Total: -50.83 kcal Atomic # 9 Polarization: -30.24 SS G_CDS: 2.05 Total: -28.20 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.63 kcal Total: -69.25 1.32 -67.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932911886.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.690 kcal (2) G-P(sol) polarization free energy of solvation -69.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -256.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -255.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds