Wall clock time and date at job start Sat Apr 11 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47287 * 2 1 4 4 C 1.34777 * 119.99607 * 90.00227 * 3 2 1 5 5 O 1.21622 * 119.99822 * 174.58728 * 4 3 2 6 6 C 1.47302 * 120.00402 * 354.58416 * 4 3 2 7 7 C 1.40059 * 120.13350 * 270.00323 * 6 4 3 8 8 F 1.35098 * 120.06946 * 359.95686 * 7 6 4 9 9 C 1.37968 * 119.86311 * 179.97438 * 7 6 4 10 10 C 1.38937 * 120.13468 * 359.97438 * 9 7 6 11 11 O 1.35710 * 119.86791 * 179.97438 * 10 9 7 12 12 C 1.42895 * 117.00572 * 180.02562 * 11 10 9 13 13 C 1.38935 * 120.26888 * 0.25996 * 10 9 7 14 14 C 1.37969 * 120.13413 * 359.48336 * 13 10 9 15 15 F 1.35098 * 120.07269 * 180.25564 * 14 13 10 16 16 C 1.46500 * 120.00072 * 269.99836 * 3 2 1 17 17 C 1.53945 * 113.74001 * 31.33247 * 16 3 2 18 18 N 1.47813 * 86.03244 * 222.08408 * 17 16 3 19 19 C 1.36939 * 134.45048 * 204.64280 * 18 17 16 20 20 H 1.08008 * 119.99712 * 182.30135 * 19 18 17 21 21 C 1.38808 * 120.00502 * 2.30893 * 19 18 17 22 22 N 1.31620 * 119.99824 * 352.56210 * 21 19 18 23 23 Si 1.86804 * 120.00377 * 172.56057 * 21 19 18 24 24 H 1.48498 * 109.46973 * 94.96811 * 23 21 19 25 25 H 1.48502 * 109.47268 * 214.97235 * 23 21 19 26 26 H 1.48504 * 109.46915 * 334.96991 * 23 21 19 27 27 C 1.47581 * 91.05398 * 24.54804 * 18 17 16 28 28 H 1.09003 * 109.47121 * 59.99916 * 1 2 3 29 29 H 1.08998 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46754 * 299.99993 * 1 2 3 31 31 H 1.09001 * 109.47435 * 240.00150 * 2 1 3 32 32 H 1.09003 * 109.47121 * 120.00084 * 2 1 3 33 33 H 1.07997 * 119.93046 * 179.97438 * 9 7 6 34 34 H 1.09007 * 109.46613 * 60.00151 * 12 11 10 35 35 H 1.08998 * 109.47524 * 179.97438 * 12 11 10 36 36 H 1.08996 * 109.47116 * 300.00290 * 12 11 10 37 37 H 1.08000 * 119.93831 * 179.74266 * 13 10 9 38 38 H 1.09004 * 112.93965 * 162.91921 * 16 3 2 39 39 H 1.09001 * 113.76879 * 336.34071 * 17 16 3 40 40 H 1.08995 * 113.76852 * 107.74669 * 17 16 3 41 41 H 0.97006 * 119.99927 * 179.97438 * 22 21 19 42 42 H 1.08995 * 113.76502 * 221.15250 * 27 18 17 43 43 H 1.08996 * 113.76685 * 89.75664 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0165 1.1673 5 8 2.7408 3.1262 1.1696 6 6 1.8857 1.3669 2.4401 7 6 0.6111 1.5521 2.9905 8 9 -0.2942 2.3282 2.3555 9 6 0.2822 0.9405 4.1827 10 6 1.2121 0.1419 4.8368 11 8 0.8829 -0.4566 6.0095 12 6 1.8857 -1.2638 6.6299 13 6 2.4796 -0.0417 4.2983 14 6 2.8186 0.5603 3.1040 15 9 4.0497 0.3767 2.5789 16 6 2.2626 2.0718 -1.2687 17 6 1.3275 1.6255 -2.4073 18 7 2.5288 1.6572 -3.2680 19 6 2.7418 1.8110 -4.6119 20 1 3.7450 1.7596 -5.0091 21 6 1.6687 2.0331 -5.4639 22 7 0.4373 1.9507 -5.0065 23 14 1.9721 2.4490 -7.2596 24 1 1.9053 1.2085 -8.0731 25 1 0.9366 3.4047 -7.7282 26 1 3.3158 3.0645 -7.4049 27 6 3.4059 1.4592 -2.0977 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 -0.7001 1.0829 4.6083 34 1 2.7606 -0.6516 6.8490 35 1 1.4936 -1.6815 7.5571 36 1 2.1680 -2.0734 5.9570 37 1 3.1996 -0.6603 4.8134 38 1 2.3324 3.1538 -1.1569 39 1 0.9125 0.6271 -2.2691 40 1 0.5749 2.3673 -2.6740 41 1 -0.3127 2.1063 -5.6018 42 1 4.3094 2.0686 -2.1178 43 1 3.6026 0.4120 -1.8684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952319472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:44 Heat of formation + Delta-G solvation = -63.060160 kcal Electronic energy + Delta-G solvation = -30476.275837 eV Core-core repulsion = 25967.825380 eV Total energy + Delta-G solvation = -4508.450457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.35289 -49.30780 -40.67358 -39.89371 -37.90364 -37.01953 -34.99094 -32.12194 -31.18991 -30.73624 -30.18964 -28.06716 -27.39463 -24.82188 -24.37460 -23.53388 -23.11191 -22.62010 -20.31908 -19.21816 -18.53065 -18.05663 -17.56428 -16.92940 -16.74833 -16.66815 -16.31038 -16.23069 -15.79394 -15.61285 -15.28193 -14.96105 -14.81974 -14.57663 -14.21749 -13.82704 -13.49390 -13.19818 -12.90075 -12.77545 -12.71275 -12.52886 -12.38205 -12.18362 -11.89786 -11.61281 -11.50864 -11.28262 -11.14396 -10.92095 -10.87344 -10.67619 -10.27959 -10.10782 -9.71963 -9.55157 -9.27289 -8.81000 -8.76750 -8.22804 -6.92573 -5.80292 -3.10977 0.49365 0.53122 2.48341 2.57826 2.81358 3.18556 3.39717 3.45072 3.47244 3.49599 3.91830 4.27588 4.34216 4.42651 4.47148 4.58329 4.63906 4.69228 4.98967 5.06686 5.20603 5.26515 5.35304 5.40379 5.46085 5.46641 5.56526 5.57669 5.65059 5.86401 5.97394 6.03026 6.09398 6.19305 6.40316 6.47222 6.59714 6.66958 6.77222 7.16487 7.31355 7.49274 7.66348 7.94387 8.27971 9.01765 9.68154 10.55070 11.37652 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024759 B = 0.002816 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.614435 B = 9942.511647 C =10280.831816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.105 3.895 3 N -0.581 5.581 4 C 0.564 3.436 5 O -0.525 6.525 6 C -0.223 4.223 7 C 0.205 3.795 8 F -0.110 7.110 9 C -0.200 4.200 10 C 0.198 3.802 11 O -0.303 6.303 12 C 0.021 3.979 13 C -0.259 4.259 14 C 0.202 3.798 15 F -0.116 7.116 16 C 0.091 3.909 17 C 0.158 3.842 18 N -0.606 5.606 19 C -0.222 4.222 20 H 0.082 0.918 21 C -0.006 4.006 22 N -0.920 5.920 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.289 1.289 26 H -0.280 1.280 27 C 0.110 3.890 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.157 0.843 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.153 0.847 38 H 0.114 0.886 39 H 0.040 0.960 40 H 0.075 0.925 41 H 0.254 0.746 42 H 0.049 0.951 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 -8.911 24.765 26.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.018 4.018 3 N -0.312 5.312 4 C 0.350 3.650 5 O -0.402 6.402 6 C -0.228 4.228 7 C 0.185 3.815 8 F -0.088 7.088 9 C -0.220 4.220 10 C 0.151 3.849 11 O -0.215 6.215 12 C -0.073 4.073 13 C -0.279 4.279 14 C 0.181 3.819 15 F -0.094 7.094 16 C -0.012 4.012 17 C 0.032 3.968 18 N -0.333 5.333 19 C -0.350 4.350 20 H 0.100 0.900 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.217 1.217 25 H -0.215 1.215 26 H -0.205 1.205 27 C -0.017 4.017 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.175 0.825 34 H 0.081 0.919 35 H 0.125 0.875 36 H 0.081 0.919 37 H 0.171 0.829 38 H 0.132 0.868 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.047 -8.233 24.448 25.797 hybrid contribution 0.388 -0.045 -1.168 1.231 sum 0.435 -8.278 23.280 24.712 Atomic orbital electron populations 1.22352 0.95403 1.02315 1.03315 1.21533 0.94982 0.82396 1.02875 1.48165 1.63364 1.13986 1.05724 1.17681 0.78952 0.85416 0.82990 1.90815 1.42981 1.19482 1.86909 1.19918 0.94985 1.07109 1.00809 1.16712 0.84748 0.89927 0.90124 1.91616 1.65042 1.71388 1.80786 1.20162 1.02314 1.03443 0.96067 1.18299 0.91070 0.90300 0.85214 1.86083 1.41387 1.61233 1.32767 1.23241 0.91721 0.94068 0.98311 1.21081 0.98516 1.09656 0.98608 1.16833 0.79828 0.94004 0.91235 1.91599 1.38842 1.93054 1.85862 1.24091 0.99511 0.98008 0.79627 1.22763 0.91473 0.98923 0.83663 1.45761 1.01918 1.83979 1.01606 1.18994 0.93440 1.42310 0.80244 0.90038 1.24793 0.95115 1.02058 0.98306 1.69827 0.97196 1.54797 1.34808 0.86095 0.77305 0.77904 0.84416 1.21666 1.21532 1.20501 1.22959 0.94648 0.97318 0.86818 0.90448 0.91635 0.93039 0.89135 0.91565 0.82535 0.91945 0.87516 0.91880 0.82943 0.86806 0.94281 0.90675 0.93563 0.93306 0.94713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 9.90 37.16 0.37 -2.01 16 2 C 0.11 1.52 5.03 -4.04 -0.02 1.50 16 3 N -0.58 -10.17 2.68 -169.22 -0.45 -10.62 16 4 C 0.56 10.09 6.37 -12.57 -0.08 10.01 16 5 O -0.53 -11.26 16.68 5.26 0.09 -11.17 16 6 C -0.22 -3.14 4.03 -104.85 -0.42 -3.56 16 7 C 0.21 2.55 6.10 -39.00 -0.24 2.32 16 8 F -0.11 -1.54 15.85 2.25 0.04 -1.51 16 9 C -0.20 -1.92 9.94 -39.42 -0.39 -2.31 16 10 C 0.20 1.71 6.69 -39.06 -0.26 1.45 16 11 O -0.30 -2.19 10.48 -18.83 -0.20 -2.38 16 12 C 0.02 0.08 9.80 101.05 0.99 1.07 16 13 C -0.26 -2.26 8.99 -39.42 -0.35 -2.61 16 14 C 0.20 2.41 6.65 -39.00 -0.26 2.15 16 15 F -0.12 -1.53 16.83 2.25 0.04 -1.49 16 16 C 0.09 1.88 4.31 -70.16 -0.30 1.57 16 17 C 0.16 3.69 6.13 -2.84 -0.02 3.67 16 18 N -0.61 -15.74 3.70 -177.91 -0.66 -16.40 16 19 C -0.22 -6.28 10.69 -15.06 -0.16 -6.45 16 20 H 0.08 2.23 7.84 -52.48 -0.41 1.81 16 21 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 22 N -0.92 -27.13 11.45 55.49 0.64 -26.49 16 23 Si 0.91 22.23 29.56 -169.99 -5.02 17.21 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.11 2.37 8.49 -2.97 -0.03 2.34 16 28 H 0.08 1.22 6.16 -51.93 -0.32 0.90 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.67 5.72 -51.93 -0.30 0.37 16 31 H 0.09 1.37 6.42 -51.93 -0.33 1.04 16 32 H 0.07 0.82 6.51 -51.93 -0.34 0.48 16 33 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.06 0.18 7.64 -51.93 -0.40 -0.22 16 35 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16 37 H 0.15 0.90 6.27 -52.49 -0.33 0.58 16 38 H 0.11 2.55 7.39 -51.93 -0.38 2.16 16 39 H 0.04 0.89 5.13 -51.93 -0.27 0.62 16 40 H 0.08 1.97 7.24 -51.93 -0.38 1.60 16 41 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.04 0.71 7.37 -51.93 -0.38 0.33 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -33.82 359.29 -6.45 -40.27 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -5.06 Total: -1.70 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -1.27 Total: 8.88 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.48 Total: -53.51 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.11 Total: -13.56 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.07 Total: -3.00 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.82 -6.45 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952319472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.787 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds