Wall clock time and date at job start Sat Apr 11 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47287 * 2 1 4 4 C 1.34777 * 119.99607 * 90.00227 * 3 2 1 5 5 O 1.21622 * 119.99822 * 174.58728 * 4 3 2 6 6 C 1.47302 * 120.00402 * 354.58416 * 4 3 2 7 7 C 1.40059 * 120.13350 * 270.00323 * 6 4 3 8 8 F 1.35098 * 120.06946 * 359.95686 * 7 6 4 9 9 C 1.37968 * 119.86311 * 179.97438 * 7 6 4 10 10 C 1.38937 * 120.13468 * 359.97438 * 9 7 6 11 11 O 1.35710 * 119.86791 * 179.97438 * 10 9 7 12 12 C 1.42895 * 117.00572 * 180.02562 * 11 10 9 13 13 C 1.38935 * 120.26888 * 0.25996 * 10 9 7 14 14 C 1.37969 * 120.13413 * 359.48336 * 13 10 9 15 15 F 1.35098 * 120.07269 * 180.25564 * 14 13 10 16 16 C 1.46500 * 120.00072 * 269.99836 * 3 2 1 17 17 C 1.53945 * 113.74001 * 31.33247 * 16 3 2 18 18 N 1.47813 * 86.03244 * 222.08408 * 17 16 3 19 19 C 1.36939 * 134.45048 * 204.64280 * 18 17 16 20 20 H 1.08008 * 119.99712 * 182.30135 * 19 18 17 21 21 C 1.38808 * 120.00502 * 2.30893 * 19 18 17 22 22 N 1.31620 * 119.99824 * 352.56210 * 21 19 18 23 23 Si 1.86804 * 120.00377 * 172.56057 * 21 19 18 24 24 H 1.48498 * 109.46973 * 94.96811 * 23 21 19 25 25 H 1.48502 * 109.47268 * 214.97235 * 23 21 19 26 26 H 1.48504 * 109.46915 * 334.96991 * 23 21 19 27 27 C 1.47581 * 91.05398 * 24.54804 * 18 17 16 28 28 H 1.09003 * 109.47121 * 59.99916 * 1 2 3 29 29 H 1.08998 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46754 * 299.99993 * 1 2 3 31 31 H 1.09001 * 109.47435 * 240.00150 * 2 1 3 32 32 H 1.09003 * 109.47121 * 120.00084 * 2 1 3 33 33 H 1.07997 * 119.93046 * 179.97438 * 9 7 6 34 34 H 1.09007 * 109.46613 * 60.00151 * 12 11 10 35 35 H 1.08998 * 109.47524 * 179.97438 * 12 11 10 36 36 H 1.08996 * 109.47116 * 300.00290 * 12 11 10 37 37 H 1.08000 * 119.93831 * 179.74266 * 13 10 9 38 38 H 1.09004 * 112.93965 * 162.91921 * 16 3 2 39 39 H 1.09001 * 113.76879 * 336.34071 * 17 16 3 40 40 H 1.08995 * 113.76852 * 107.74669 * 17 16 3 41 41 H 0.97006 * 119.99927 * 179.97438 * 22 21 19 42 42 H 1.08995 * 113.76502 * 221.15250 * 27 18 17 43 43 H 1.08996 * 113.76685 * 89.75664 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0165 1.1673 5 8 2.7408 3.1262 1.1696 6 6 1.8857 1.3669 2.4401 7 6 0.6111 1.5521 2.9905 8 9 -0.2942 2.3282 2.3555 9 6 0.2822 0.9405 4.1827 10 6 1.2121 0.1419 4.8368 11 8 0.8829 -0.4566 6.0095 12 6 1.8857 -1.2638 6.6299 13 6 2.4796 -0.0417 4.2983 14 6 2.8186 0.5603 3.1040 15 9 4.0497 0.3767 2.5789 16 6 2.2626 2.0718 -1.2687 17 6 1.3275 1.6255 -2.4073 18 7 2.5288 1.6572 -3.2680 19 6 2.7418 1.8110 -4.6119 20 1 3.7450 1.7596 -5.0091 21 6 1.6687 2.0331 -5.4639 22 7 0.4373 1.9507 -5.0065 23 14 1.9721 2.4490 -7.2596 24 1 1.9053 1.2085 -8.0731 25 1 0.9366 3.4047 -7.7282 26 1 3.3158 3.0645 -7.4049 27 6 3.4059 1.4592 -2.0977 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 -0.7001 1.0829 4.6083 34 1 2.7606 -0.6516 6.8490 35 1 1.4936 -1.6815 7.5571 36 1 2.1680 -2.0734 5.9570 37 1 3.1996 -0.6603 4.8134 38 1 2.3324 3.1538 -1.1569 39 1 0.9125 0.6271 -2.2691 40 1 0.5749 2.3673 -2.6740 41 1 -0.3127 2.1063 -5.6018 42 1 4.3094 2.0686 -2.1178 43 1 3.6026 0.4120 -1.8684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000952319472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:43 Heat of formation + Delta-G solvation = -84.755790 kcal Electronic energy + Delta-G solvation = -30477.216630 eV Core-core repulsion = 25967.825380 eV Total energy + Delta-G solvation = -4509.391250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.30154 -50.28414 -41.68439 -41.01667 -39.43821 -37.97479 -36.50038 -34.15443 -32.01930 -31.63071 -31.53474 -29.47682 -28.34046 -26.67966 -25.71971 -24.85312 -24.01842 -23.89645 -21.79862 -20.18729 -19.88871 -19.08742 -18.90057 -18.52980 -18.00958 -17.49950 -17.28303 -17.12767 -16.91406 -16.59876 -16.52190 -16.22221 -16.06116 -15.68669 -15.59572 -15.50477 -14.88350 -14.43062 -14.03437 -13.90154 -13.77739 -13.66879 -13.36452 -13.29084 -13.26529 -13.21976 -12.93313 -12.68199 -12.49403 -12.37497 -12.19550 -12.11454 -12.00035 -11.88772 -11.55440 -11.17680 -10.85580 -10.08799 -9.77294 -9.59830 -9.00326 -7.95856 -5.28459 -0.36956 -0.27071 1.21464 1.44441 1.47264 1.56556 1.73832 1.90889 2.09963 2.46257 2.65553 3.10038 3.13627 3.26010 3.37478 3.61061 3.65500 3.74289 3.92028 3.93018 4.18629 4.29331 4.32012 4.33249 4.43101 4.46256 4.53191 4.57078 4.67763 4.68562 4.77109 4.80777 4.85758 4.86404 4.87125 5.11761 5.18725 5.26647 5.33795 5.42369 5.59435 5.85108 6.10432 6.23965 6.86068 6.87239 7.54576 8.47737 9.21979 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024759 B = 0.002816 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.614435 B = 9942.511647 C =10280.831816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 N -0.581 5.581 4 C 0.564 3.436 5 O -0.573 6.573 6 C -0.248 4.248 7 C 0.192 3.808 8 F -0.127 7.127 9 C -0.189 4.189 10 C 0.214 3.786 11 O -0.306 6.306 12 C 0.007 3.993 13 C -0.238 4.238 14 C 0.192 3.808 15 F -0.127 7.127 16 C 0.112 3.888 17 C 0.167 3.833 18 N -0.635 5.635 19 C -0.238 4.238 20 H 0.085 0.915 21 C -0.063 4.063 22 N -0.950 5.950 23 Si 0.981 3.019 24 H -0.283 1.283 25 H -0.293 1.293 26 H -0.269 1.269 27 C 0.116 3.884 28 H 0.047 0.953 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.178 0.822 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.076 0.924 37 H 0.187 0.813 38 H 0.091 0.909 39 H 0.049 0.951 40 H 0.038 0.962 41 H 0.251 0.749 42 H 0.050 0.950 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.458 -11.207 27.250 29.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.311 5.311 4 C 0.351 3.649 5 O -0.452 6.452 6 C -0.253 4.253 7 C 0.171 3.829 8 F -0.106 7.106 9 C -0.208 4.208 10 C 0.166 3.834 11 O -0.217 6.217 12 C -0.087 4.087 13 C -0.257 4.257 14 C 0.172 3.828 15 F -0.105 7.105 16 C 0.007 3.993 17 C 0.041 3.959 18 N -0.362 5.362 19 C -0.366 4.366 20 H 0.103 0.897 21 C -0.256 4.256 22 N -0.598 5.598 23 Si 0.809 3.191 24 H -0.210 1.210 25 H -0.219 1.219 26 H -0.194 1.194 27 C -0.010 4.010 28 H 0.066 0.934 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.195 0.805 34 H 0.092 0.908 35 H 0.146 0.854 36 H 0.095 0.905 37 H 0.204 0.796 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.485 -10.573 26.978 28.980 hybrid contribution 0.259 0.577 -1.719 1.832 sum 0.744 -9.996 25.259 27.175 Atomic orbital electron populations 1.22285 0.94624 1.03788 1.02039 1.21736 0.95598 0.80586 1.03888 1.48144 1.63324 1.15046 1.04612 1.18261 0.77602 0.84830 0.84163 1.90774 1.45045 1.21624 1.87781 1.19646 0.96648 1.09401 0.99598 1.16856 0.84087 0.90750 0.91173 1.91573 1.65508 1.72114 1.81363 1.20329 1.03420 1.02380 0.94655 1.18309 0.90476 0.89203 0.85418 1.86115 1.42809 1.61127 1.31675 1.23639 0.91612 0.94186 0.99242 1.21333 0.99083 1.08385 0.96872 1.16965 0.79088 0.94542 0.92208 1.91572 1.39467 1.93207 1.86247 1.23407 0.98070 0.96948 0.80886 1.22593 0.90554 0.98325 0.84380 1.46065 1.03786 1.84441 1.01917 1.19369 0.93751 1.41861 0.81602 0.89682 1.25653 0.94931 1.02406 1.02600 1.70005 0.97831 1.55935 1.36034 0.85030 0.77298 0.77532 0.79240 1.20987 1.21945 1.19410 1.23032 0.94394 0.98414 0.85148 0.93377 0.88734 0.92589 0.89750 0.88721 0.80504 0.90798 0.85428 0.90499 0.79630 0.89143 0.93315 0.94315 0.94030 0.93135 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.48 9.90 71.98 0.71 -3.77 16 2 C 0.10 2.92 5.03 86.38 0.43 3.35 16 3 N -0.58 -20.76 2.68 -807.54 -2.17 -22.92 16 4 C 0.56 20.65 6.37 86.63 0.55 21.20 16 5 O -0.57 -25.70 16.68 -4.10 -0.07 -25.77 16 6 C -0.25 -6.82 4.03 -20.01 -0.08 -6.90 16 7 C 0.19 4.58 6.10 22.65 0.14 4.72 16 8 F -0.13 -3.61 15.85 44.97 0.71 -2.90 16 9 C -0.19 -3.10 9.94 22.37 0.22 -2.88 16 10 C 0.21 2.88 6.69 22.60 0.15 3.03 16 11 O -0.31 -3.06 10.48 -90.31 -0.95 -4.01 16 12 C 0.01 0.02 9.80 113.37 1.11 1.13 16 13 C -0.24 -3.26 8.99 22.37 0.20 -3.05 16 14 C 0.19 4.23 6.65 22.65 0.15 4.38 16 15 F -0.13 -3.17 16.83 44.97 0.76 -2.42 16 16 C 0.11 4.81 4.31 46.75 0.20 5.01 16 17 C 0.17 8.19 6.13 86.44 0.53 8.72 16 18 N -0.63 -33.88 3.70 -716.80 -2.65 -36.53 16 19 C -0.24 -13.68 10.69 84.03 0.90 -12.79 16 20 H 0.09 4.68 7.84 -2.91 -0.02 4.66 16 21 C -0.06 -3.61 5.50 84.86 0.47 -3.15 16 22 N -0.95 -57.75 11.45 21.65 0.25 -57.50 16 23 Si 0.98 46.38 29.56 68.60 2.03 48.41 16 24 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 27 C 0.12 5.10 8.49 86.48 0.73 5.83 16 28 H 0.05 1.56 6.16 -2.39 -0.01 1.54 16 29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.06 1.43 5.72 -2.38 -0.01 1.42 16 31 H 0.08 2.49 6.42 -2.39 -0.02 2.48 16 32 H 0.09 2.16 6.51 -2.39 -0.02 2.14 16 33 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.07 0.06 7.64 -2.38 -0.02 0.04 16 35 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.08 0.03 7.66 -2.39 -0.02 0.01 16 37 H 0.19 1.26 6.27 -2.91 -0.02 1.24 16 38 H 0.09 4.33 7.39 -2.38 -0.02 4.32 16 39 H 0.05 2.29 5.13 -2.39 -0.01 2.28 16 40 H 0.04 2.16 7.24 -2.39 -0.02 2.14 16 41 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 42 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.06 2.26 7.37 -2.39 -0.02 2.25 16 Total: -1.00 -76.62 359.29 5.40 -71.23 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 1.07 Total: 7.57 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: 6.42 Total: 24.84 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -4.57 Total: -116.95 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -1.01 Total: -29.78 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 1.47 Total: -5.31 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -76.62 5.40 -71.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952319472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.529 kcal (2) G-P(sol) polarization free energy of solvation -76.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds