Wall clock time and date at job start Sat Apr 11 2020 05:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35707 * 116.99819 * 2 1 4 4 C 1.38942 * 119.86362 * 180.02562 * 3 2 1 5 5 C 1.37964 * 120.13154 * 180.02562 * 4 3 2 6 6 F 1.35102 * 120.07118 * 180.02562 * 5 4 3 7 7 C 1.40060 * 119.86912 * 359.97438 * 5 4 3 8 8 C 1.47296 * 120.13916 * 179.97438 * 7 5 4 9 9 O 1.21618 * 120.00190 * 90.00111 * 8 7 5 10 10 N 1.34781 * 120.00037 * 270.00481 * 8 7 5 11 11 C 1.47418 * 125.64712 * 0.03502 * 10 8 7 12 12 C 1.54910 * 104.83130 * 204.09284 * 11 10 8 13 13 C 1.55152 * 101.58515 * 322.99225 * 12 11 10 14 14 H 1.08995 * 110.72382 * 277.13704 * 13 12 11 15 15 N 1.46497 * 110.87410 * 153.93057 * 13 12 11 16 16 C 1.46502 * 120.00669 * 302.55068 * 15 13 12 17 17 C 1.36949 * 119.99825 * 122.54845 * 15 13 12 18 18 H 1.07997 * 119.99685 * 23.46084 * 17 15 13 19 19 C 1.38811 * 119.99995 * 203.45935 * 17 15 13 20 20 N 1.31614 * 119.99950 * 14.99225 * 19 17 15 21 21 Si 1.86799 * 119.99783 * 194.98813 * 19 17 15 22 22 H 1.48497 * 109.47069 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46999 * 120.00356 * 21 19 17 24 24 H 1.48502 * 109.46921 * 240.00059 * 21 19 17 25 25 C 1.47022 * 125.64644 * 179.97438 * 10 8 7 26 26 C 1.40069 * 119.73090 * 0.25894 * 7 5 4 27 27 F 1.35100 * 120.06813 * 179.74655 * 26 7 5 28 28 C 1.37958 * 119.86248 * 359.48434 * 26 7 5 29 29 H 1.09007 * 109.47088 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47197 * 300.00129 * 1 2 3 31 31 H 1.08997 * 109.47361 * 60.00527 * 1 2 3 32 32 H 1.07994 * 119.93560 * 0.04056 * 4 3 2 33 33 H 1.08994 * 110.37124 * 322.93065 * 11 10 8 34 34 H 1.09006 * 110.36324 * 85.26137 * 11 10 8 35 35 H 1.08999 * 111.00698 * 204.91709 * 12 11 10 36 36 H 1.08996 * 111.00355 * 81.06612 * 12 11 10 37 37 H 1.09002 * 109.46862 * 95.20084 * 16 15 13 38 38 H 1.08994 * 109.47334 * 215.20501 * 16 15 13 39 39 H 1.08999 * 109.46543 * 335.20800 * 16 15 13 40 40 H 0.97007 * 120.00205 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.88726 * 59.55869 * 25 10 8 42 42 H 1.09003 * 109.88193 * 298.39114 * 25 10 8 43 43 H 1.07999 * 119.93653 * 180.27708 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4327 1.2786 -0.0005 5 6 4.0648 2.5050 0.0000 6 9 5.4142 2.5711 -0.0011 7 6 3.3047 3.6814 0.0005 8 6 3.9734 4.9939 0.0017 9 8 4.2498 5.5365 -1.0511 10 7 4.2789 5.5935 1.1694 11 6 4.0033 5.0506 2.5120 12 6 3.9490 6.2912 3.4380 13 6 5.0603 7.1850 2.8269 14 1 6.0410 6.8908 3.2006 15 7 4.8045 8.6002 3.1062 16 6 3.5467 9.2161 2.6763 17 6 5.7413 9.3474 3.7693 18 1 6.7787 9.0477 3.7566 19 6 5.3572 10.4900 4.4576 20 7 4.0861 10.7001 4.7267 21 14 6.6445 11.7292 5.0021 22 1 7.9898 11.2635 4.5798 23 1 6.3588 13.0463 4.3784 24 1 6.6082 11.8635 6.4806 25 6 4.9435 6.8968 1.3152 26 6 1.9062 3.6048 0.0060 27 9 1.1664 4.7353 0.0118 28 6 1.2856 2.3727 0.0001 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 4.0178 0.3709 -0.0016 33 1 3.0466 4.5284 2.5210 34 1 4.8052 4.3805 2.8222 35 1 4.1865 6.0215 4.4670 36 1 2.9771 6.7809 3.3785 37 1 2.8325 9.1961 3.4995 38 1 3.7305 10.2487 2.3797 39 1 3.1413 8.6616 1.8300 40 1 3.8177 11.4988 5.2075 41 1 4.3473 7.6728 0.8351 42 1 5.9364 6.8588 0.8671 43 1 0.2073 2.3123 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972398873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:07 Heat of formation + Delta-G solvation = -94.078723 kcal Electronic energy + Delta-G solvation = -30030.696473 eV Core-core repulsion = 25520.900950 eV Total energy + Delta-G solvation = -4509.795523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.38017 -49.35675 -40.67431 -39.77656 -37.75560 -37.01887 -34.80373 -31.88324 -31.17673 -30.77481 -29.73675 -28.20918 -27.64586 -26.05036 -24.50786 -23.31533 -22.91701 -22.28549 -19.93432 -19.25841 -19.16144 -18.12050 -17.46705 -17.04609 -16.80886 -16.64789 -16.33146 -16.12968 -15.79584 -15.63412 -15.56324 -15.05245 -14.97006 -14.62021 -13.93981 -13.57636 -13.35440 -13.23852 -13.15388 -12.75283 -12.69762 -12.48926 -12.41863 -12.33169 -11.92915 -11.73893 -11.40026 -11.32468 -11.00368 -10.79954 -10.59429 -10.48924 -10.24203 -10.00473 -9.88890 -9.81669 -9.32069 -8.87077 -8.59726 -8.40469 -6.82208 -5.77541 -3.24943 0.43828 0.49250 2.44745 2.51778 2.76127 3.11083 3.36408 3.44323 3.45257 3.46408 3.87277 4.26270 4.31877 4.38159 4.46016 4.55854 4.62684 4.64823 4.97688 5.00927 5.16460 5.26659 5.34706 5.36652 5.42479 5.52752 5.54146 5.56458 5.74762 5.88560 5.98563 6.02561 6.27670 6.37601 6.51023 6.60816 6.63437 6.78917 6.86031 7.31928 7.62491 7.69646 7.77659 8.16406 8.34312 9.17148 9.79877 10.28977 11.27084 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023029 B = 0.002647 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.566006 B =10573.730542 C =10942.377398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.302 6.302 3 C 0.200 3.800 4 C -0.201 4.201 5 C 0.205 3.795 6 F -0.113 7.113 7 C -0.224 4.224 8 C 0.577 3.423 9 O -0.528 6.528 10 N -0.598 5.598 11 C 0.098 3.902 12 C -0.149 4.149 13 C 0.174 3.826 14 H 0.081 0.919 15 N -0.585 5.585 16 C 0.157 3.843 17 C -0.261 4.261 18 H 0.071 0.929 19 C 0.005 3.995 20 N -0.902 5.902 21 Si 0.905 3.095 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.086 3.914 26 C 0.206 3.794 27 F -0.114 7.114 28 C -0.259 4.259 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.157 0.843 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.040 0.960 39 H 0.003 0.997 40 H 0.253 0.747 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.115 -23.239 -7.377 25.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.214 6.214 3 C 0.153 3.847 4 C -0.220 4.220 5 C 0.184 3.816 6 F -0.091 7.091 7 C -0.230 4.230 8 C 0.363 3.637 9 O -0.404 6.404 10 N -0.330 5.330 11 C -0.025 4.025 12 C -0.190 4.190 13 C 0.063 3.937 14 H 0.099 0.901 15 N -0.305 5.305 16 C 0.013 3.987 17 C -0.390 4.390 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.546 5.546 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.217 1.217 25 C -0.038 4.038 26 C 0.185 3.815 27 F -0.092 7.092 28 C -0.278 4.278 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.175 0.825 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.022 0.978 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.953 -22.915 -7.905 25.512 hybrid contribution 0.320 1.033 0.382 1.147 sum -7.633 -21.882 -7.523 24.366 Atomic orbital electron populations 1.23257 0.77123 1.04820 1.02191 1.86083 1.22398 1.25574 1.87376 1.18314 0.91008 0.84069 0.91320 1.20150 0.92383 0.97619 1.11866 1.16720 0.77184 0.91436 0.96251 1.91604 1.27653 1.97006 1.92839 1.19815 0.92946 0.94783 1.15407 1.17199 0.79359 0.83792 0.83330 1.90826 1.53960 1.65066 1.30591 1.48449 1.57929 1.21383 1.05262 1.22410 1.00289 0.97664 0.82114 1.23379 1.02392 0.94690 0.98495 1.21303 0.96873 0.85821 0.89682 0.90114 1.43878 1.18590 1.03233 1.64820 1.20807 0.87480 0.95562 0.94857 1.19248 0.88623 1.05509 1.25630 0.91163 1.25023 0.96106 1.00212 0.98041 1.70086 1.14464 1.27379 1.42720 0.86181 0.81000 0.81433 0.77883 1.20221 1.21566 1.21723 1.22869 0.96914 0.83019 1.00998 1.16840 0.86554 0.82328 0.95731 1.91614 1.75933 1.48913 1.92734 1.21102 1.01882 0.90360 1.14484 0.87457 0.91810 0.91897 0.82491 0.91651 0.91317 0.90121 0.90499 0.94743 0.94078 0.97817 0.93720 0.90589 0.91702 0.82829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.80 101.05 0.99 1.07 16 2 O -0.30 -2.15 10.48 -18.83 -0.20 -2.35 16 3 C 0.20 1.71 6.69 -39.06 -0.26 1.44 16 4 C -0.20 -1.85 9.94 -39.42 -0.39 -2.24 16 5 C 0.20 2.46 7.28 -39.00 -0.28 2.18 16 6 F -0.11 -1.49 16.83 2.25 0.04 -1.45 16 7 C -0.22 -3.15 4.53 -104.85 -0.48 -3.62 16 8 C 0.58 10.27 6.55 -12.58 -0.08 10.19 16 9 O -0.53 -11.26 17.43 5.26 0.09 -11.17 16 10 N -0.60 -10.28 3.33 -171.83 -0.57 -10.85 16 11 C 0.10 1.42 6.68 -2.53 -0.02 1.40 16 12 C -0.15 -2.54 6.65 -24.58 -0.16 -2.70 16 13 C 0.17 3.45 3.43 -66.10 -0.23 3.22 16 14 H 0.08 1.57 7.93 -51.93 -0.41 1.16 16 15 N -0.58 -14.29 2.93 -171.39 -0.50 -14.79 16 16 C 0.16 3.84 7.65 59.85 0.46 4.30 16 17 C -0.26 -6.99 9.59 -15.05 -0.14 -7.14 16 18 H 0.07 1.84 7.86 -52.49 -0.41 1.43 16 19 C 0.01 0.14 5.06 -17.43 -0.09 0.05 16 20 N -0.90 -25.85 10.85 55.49 0.60 -25.25 16 21 Si 0.91 21.59 29.58 -169.99 -5.03 16.56 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.09 1.64 6.39 -3.06 -0.02 1.62 16 26 C 0.21 2.52 7.28 -39.00 -0.28 2.24 16 27 F -0.11 -1.59 16.83 2.25 0.04 -1.55 16 28 C -0.26 -2.29 8.99 -39.42 -0.35 -2.65 16 29 H 0.11 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.18 7.65 -51.93 -0.40 -0.22 16 31 H 0.06 0.18 7.65 -51.93 -0.40 -0.22 16 32 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.07 0.84 7.69 -51.93 -0.40 0.44 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.08 1.43 7.26 -51.93 -0.38 1.05 16 37 H 0.03 0.90 7.32 -51.93 -0.38 0.52 16 38 H 0.04 1.08 7.43 -51.93 -0.39 0.69 16 39 H 0.00 0.08 6.35 -51.93 -0.33 -0.25 16 40 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.08 1.60 6.19 -51.93 -0.32 1.28 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.15 0.95 6.27 -52.49 -0.33 0.62 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -32.62 364.63 -6.77 -39.38 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -5.39 Total: -3.39 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -1.34 Total: 9.37 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.47 Total: -50.90 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.11 Total: -13.52 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.08 Total: -3.00 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.62 -6.77 -39.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972398873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.694 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds