Wall clock time and date at job start Sat Apr 11 2020 05:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36015 * 116.99954 * 2 1 4 4 C 1.38714 * 119.95535 * 359.97438 * 3 2 1 5 5 C 1.38277 * 120.32590 * 179.97438 * 4 3 2 6 6 C 1.38200 * 120.24273 * 359.71413 * 5 4 3 7 7 F 1.35096 * 120.04754 * 180.30227 * 6 5 4 8 8 C 1.39905 * 119.90662 * 0.58063 * 6 5 4 9 9 C 1.47549 * 120.16032 * 179.69932 * 8 6 5 10 10 O 1.21587 * 120.00006 * 269.72284 * 9 8 6 11 11 N 1.34779 * 119.99857 * 89.72687 * 9 8 6 12 12 C 1.47420 * 125.65193 * 359.95720 * 11 9 8 13 13 C 1.55120 * 104.94301 * 204.03838 * 12 11 9 14 14 C 1.55153 * 101.48801 * 323.21920 * 13 12 11 15 15 H 1.08994 * 110.72504 * 276.83264 * 14 13 12 16 16 N 1.46496 * 110.72286 * 153.73039 * 14 13 12 17 17 C 1.46506 * 120.00556 * 302.44798 * 16 14 13 18 18 C 1.36942 * 120.00039 * 122.71468 * 16 14 13 19 19 H 1.07999 * 119.99674 * 23.27912 * 18 16 14 20 20 C 1.38811 * 120.00437 * 203.27065 * 18 16 14 21 21 N 1.31617 * 119.99607 * 15.13341 * 20 18 16 22 22 Si 1.86796 * 120.00255 * 195.13390 * 20 18 16 23 23 H 1.48503 * 109.46900 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47345 * 119.99998 * 22 20 18 25 25 H 1.48503 * 109.47015 * 240.00108 * 22 20 18 26 26 C 1.47028 * 125.64258 * 179.97438 * 11 9 8 27 27 C 1.38650 * 119.95603 * 179.97438 * 3 2 1 28 28 F 1.35098 * 120.12264 * 0.02562 * 27 3 2 29 29 H 1.08998 * 109.46902 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47383 * 299.99787 * 1 2 3 31 31 H 1.09001 * 109.46981 * 59.99822 * 1 2 3 32 32 H 1.07995 * 119.83407 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.87578 * 179.97438 * 5 4 3 34 34 H 1.08997 * 110.36505 * 322.99963 * 12 11 9 35 35 H 1.08999 * 110.36694 * 85.21655 * 12 11 9 36 36 H 1.09003 * 111.16211 * 205.12610 * 13 12 11 37 37 H 1.09001 * 110.93469 * 81.21444 * 13 12 11 38 38 H 1.08999 * 109.47318 * 95.20748 * 17 16 14 39 39 H 1.09001 * 109.47132 * 215.21656 * 17 16 14 40 40 H 1.09008 * 109.46457 * 335.20973 * 17 16 14 41 41 H 0.97003 * 120.00322 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.88350 * 59.49149 * 26 11 9 43 43 H 1.08997 * 110.01096 * 298.38976 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2901 2.3747 -0.0005 5 6 1.9099 3.6108 0.0000 6 6 3.2891 3.6979 0.0070 7 9 3.8905 4.9076 0.0137 8 6 4.0618 2.5315 0.0013 9 6 5.5347 2.6181 0.0021 10 8 6.1421 2.6539 -1.0506 11 7 6.2068 2.6573 1.1697 12 6 5.5993 2.6222 2.5124 13 6 6.6437 3.2945 3.4416 14 6 7.9754 2.7889 2.8266 15 1 8.2201 1.7949 3.2007 16 7 9.0646 3.7281 3.1052 17 6 8.9562 5.1243 2.6747 18 6 10.1866 3.2998 3.7632 19 1 10.4547 2.2537 3.7488 20 6 10.9795 4.2101 4.4484 21 7 10.5159 5.4110 4.7224 22 14 12.7043 3.7307 4.9816 23 1 12.9846 2.3361 4.5550 24 1 13.6894 4.6474 4.3536 25 1 12.8104 3.8275 6.4597 26 6 7.6674 2.7425 1.3150 27 6 3.4312 1.2834 0.0005 28 9 4.1685 0.1514 0.0005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2118 2.3142 -0.0005 33 1 1.3139 4.5114 -0.0009 34 1 4.6653 3.1839 2.5210 35 1 5.4246 1.5921 2.8229 36 1 6.5335 2.9517 4.4705 37 1 6.5742 4.3808 3.3839 38 1 8.5765 5.7299 3.4977 39 1 9.9389 5.4903 2.3774 40 1 8.2722 5.1915 1.8286 41 1 11.0697 6.0471 5.2016 42 1 8.0356 3.6486 0.8339 43 1 8.1385 1.8675 0.8673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972766304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:15 Heat of formation + Delta-G solvation = -91.525820 kcal Electronic energy + Delta-G solvation = -30153.179413 eV Core-core repulsion = 25643.494592 eV Total energy + Delta-G solvation = -4509.684821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.20770 -49.18121 -40.53690 -39.76460 -37.79770 -37.11310 -34.80995 -32.06681 -31.26206 -30.40248 -29.74714 -27.98929 -27.71384 -26.04822 -24.78915 -23.24658 -22.88490 -22.29216 -20.08734 -19.22579 -18.54001 -18.09061 -18.04148 -17.12786 -16.99866 -16.59081 -16.13046 -16.00173 -15.69854 -15.39261 -15.27608 -15.17047 -14.77212 -14.61194 -13.95702 -13.55543 -13.42937 -13.35437 -12.93804 -12.70450 -12.64823 -12.50609 -12.39651 -12.34915 -11.88087 -11.71294 -11.42861 -11.38158 -11.00138 -10.79401 -10.59749 -10.48357 -10.24303 -10.07437 -9.88390 -9.82443 -9.46241 -8.59465 -8.59173 -8.42522 -6.81643 -5.77131 -3.24240 0.31129 0.57297 2.32872 2.65742 2.77631 3.12050 3.36955 3.44865 3.45840 3.46997 3.88012 4.06045 4.29239 4.37863 4.46418 4.62581 4.65211 4.78145 4.99442 4.99910 5.21559 5.24830 5.29848 5.38358 5.45805 5.47768 5.54722 5.55737 5.73753 5.88418 5.98103 6.01723 6.27247 6.37317 6.49704 6.61066 6.69642 6.79394 6.86276 7.32449 7.59128 7.69729 7.78279 8.11090 8.34751 9.17664 9.80404 10.29484 11.27726 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022673 B = 0.002710 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.637330 B =10328.384943 C =10723.808489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.304 6.304 3 C 0.086 3.914 4 C -0.142 4.142 5 C -0.122 4.122 6 C 0.126 3.874 7 F -0.119 7.119 8 C -0.147 4.147 9 C 0.575 3.425 10 O -0.523 6.523 11 N -0.596 5.596 12 C 0.097 3.903 13 C -0.148 4.148 14 C 0.174 3.826 15 H 0.081 0.919 16 N -0.585 5.585 17 C 0.157 3.843 18 C -0.261 4.261 19 H 0.070 0.930 20 C 0.005 3.995 21 N -0.902 5.902 22 Si 0.905 3.095 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.086 3.914 27 C 0.133 3.867 28 F -0.112 7.112 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.041 0.959 40 H 0.004 0.996 41 H 0.253 0.747 42 H 0.077 0.923 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.715 -6.715 -7.323 26.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.217 6.217 3 C 0.039 3.961 4 C -0.161 4.161 5 C -0.141 4.141 6 C 0.106 3.894 7 F -0.097 7.097 8 C -0.152 4.152 9 C 0.361 3.639 10 O -0.400 6.400 11 N -0.328 5.328 12 C -0.026 4.026 13 C -0.188 4.188 14 C 0.063 3.937 15 H 0.099 0.901 16 N -0.305 5.305 17 C 0.013 3.987 18 C -0.390 4.390 19 H 0.088 0.912 20 C -0.194 4.194 21 N -0.546 5.546 22 Si 0.735 3.265 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.217 1.217 26 C -0.038 4.038 27 C 0.112 3.888 28 F -0.090 7.090 29 H 0.124 0.876 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.170 0.830 33 H 0.171 0.829 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.022 0.978 41 H 0.063 0.937 42 H 0.095 0.905 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.134 -6.731 -7.848 26.255 hybrid contribution 0.804 0.056 0.355 0.881 sum -23.330 -6.674 -7.493 25.396 Atomic orbital electron populations 1.23194 0.77460 1.04736 1.01676 1.86195 1.22018 1.24893 1.88644 1.18751 0.90142 0.86219 1.00959 1.21060 1.00835 0.90286 1.03911 1.20933 0.91986 0.99288 1.01888 1.17167 0.90211 0.79479 1.02545 1.91598 1.83801 1.40840 1.93450 1.19819 0.95440 0.91772 1.08198 1.17212 0.85158 0.78033 0.83524 1.90835 1.68595 1.50064 1.30514 1.48412 1.08972 1.70236 1.05198 1.22471 0.97290 1.00826 0.82050 1.23413 0.95620 1.01372 0.98443 1.21308 0.87764 0.94999 0.89622 0.90072 1.43872 1.15663 1.06005 1.64982 1.20812 0.98396 0.84657 0.94867 1.19246 0.99726 0.94168 1.25886 0.91173 1.25018 0.99514 0.96785 0.98053 1.70086 1.35498 1.06364 1.42683 0.86183 0.84528 0.77943 0.77850 1.20224 1.21567 1.21725 1.22889 0.77457 1.02376 1.01072 1.16407 0.85823 0.81527 1.05049 1.91581 1.76377 1.47619 1.93463 0.87607 0.92099 0.92180 0.82975 0.82899 0.91554 0.91265 0.90043 0.90435 0.94737 0.94064 0.97797 0.93717 0.90510 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.30 -2.80 10.36 -19.79 -0.20 -3.00 16 3 C 0.09 0.86 6.68 -39.25 -0.26 0.59 16 4 C -0.14 -1.00 9.03 -39.39 -0.36 -1.36 16 5 C -0.12 -0.99 10.00 -39.58 -0.40 -1.39 16 6 C 0.13 1.54 7.28 -38.97 -0.28 1.26 16 7 F -0.12 -1.67 16.82 2.25 0.04 -1.63 16 8 C -0.15 -2.12 4.53 -104.88 -0.48 -2.59 16 9 C 0.58 10.40 6.57 -12.46 -0.08 10.32 16 10 O -0.52 -11.26 17.43 5.29 0.09 -11.17 16 11 N -0.60 -10.38 3.33 -171.60 -0.57 -10.95 16 12 C 0.10 1.42 6.68 -2.42 -0.02 1.40 16 13 C -0.15 -2.53 6.66 -24.47 -0.16 -2.69 16 14 C 0.17 3.46 3.43 -66.09 -0.23 3.24 16 15 H 0.08 1.59 7.93 -51.93 -0.41 1.18 16 16 N -0.58 -14.31 2.93 -171.38 -0.50 -14.82 16 17 C 0.16 3.84 7.64 59.85 0.46 4.30 16 18 C -0.26 -7.01 9.59 -15.06 -0.14 -7.16 16 19 H 0.07 1.84 7.86 -52.49 -0.41 1.43 16 20 C 0.01 0.14 5.05 -17.43 -0.09 0.06 16 21 N -0.90 -25.89 10.87 55.49 0.60 -25.29 16 22 Si 0.91 21.63 29.58 -169.99 -5.03 16.60 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 26 C 0.09 1.65 6.39 -3.06 -0.02 1.63 16 27 C 0.13 1.75 7.30 -38.83 -0.28 1.46 16 28 F -0.11 -1.68 16.67 2.25 0.04 -1.65 16 29 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.16 7.66 -51.93 -0.40 -0.24 16 31 H 0.06 0.16 7.66 -51.93 -0.40 -0.23 16 32 H 0.15 0.51 6.27 -52.49 -0.33 0.18 16 33 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.07 0.86 7.69 -51.93 -0.40 0.46 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.08 1.44 7.24 -51.93 -0.38 1.06 16 38 H 0.03 0.90 7.33 -51.93 -0.38 0.52 16 39 H 0.04 1.09 7.42 -51.93 -0.39 0.70 16 40 H 0.00 0.08 6.35 -51.92 -0.33 -0.25 16 41 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.08 1.62 6.20 -51.93 -0.32 1.30 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -33.44 364.51 -6.78 -40.22 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -5.39 Total: -3.97 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -1.35 Total: 10.16 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.47 Total: -51.05 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.11 Total: -14.17 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.08 Total: -3.28 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.44 -6.78 -40.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972766304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.304 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds