Wall clock time and date at job start Sat Apr 11 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36011 * 116.99835 * 2 1 4 4 C 1.38700 * 119.96062 * 359.97438 * 3 2 1 5 5 C 1.38282 * 120.33475 * 179.97438 * 4 3 2 6 6 C 1.38196 * 120.23852 * 0.02562 * 5 4 3 7 7 F 1.35100 * 120.04881 * 180.02562 * 6 5 4 8 8 C 1.39904 * 119.90911 * 359.97438 * 6 5 4 9 9 C 1.47555 * 120.16491 * 180.02562 * 8 6 5 10 10 O 1.21582 * 120.00006 * 90.00194 * 9 8 6 11 11 N 1.34776 * 119.99736 * 270.00265 * 9 8 6 12 12 C 1.47423 * 125.64966 * 359.68564 * 11 9 8 13 13 C 1.55126 * 104.72267 * 155.81942 * 12 11 9 14 14 C 1.55167 * 101.48420 * 37.30025 * 13 12 11 15 15 H 1.08994 * 110.72122 * 82.69616 * 14 13 12 16 16 N 1.46503 * 110.71797 * 205.97100 * 14 13 12 17 17 C 1.46496 * 120.00178 * 54.97461 * 16 14 13 18 18 C 1.36941 * 119.99778 * 234.97224 * 16 14 13 19 19 H 1.08000 * 119.99902 * 23.45377 * 18 16 14 20 20 C 1.38808 * 119.99965 * 203.44905 * 18 16 14 21 21 N 1.31622 * 119.99989 * 14.54535 * 20 18 16 22 22 Si 1.86800 * 119.99932 * 194.54705 * 20 18 16 23 23 H 1.48502 * 109.47192 * 359.97438 * 22 20 18 24 24 H 1.48509 * 109.47061 * 119.99788 * 22 20 18 25 25 H 1.48493 * 109.47254 * 239.99771 * 22 20 18 26 26 C 1.47022 * 125.64830 * 180.02562 * 11 9 8 27 27 C 1.38655 * 119.95451 * 179.72584 * 3 2 1 28 28 F 1.35105 * 120.12037 * 359.97438 * 27 3 2 29 29 H 1.09005 * 109.46921 * 60.00377 * 1 2 3 30 30 H 1.08997 * 109.47040 * 300.00107 * 1 2 3 31 31 H 1.09002 * 109.46907 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.83270 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.88134 * 180.02562 * 5 4 3 34 34 H 1.09001 * 110.36994 * 274.74808 * 12 11 9 35 35 H 1.09001 * 110.36432 * 37.07344 * 12 11 9 36 36 H 1.09003 * 111.19722 * 279.19864 * 13 12 11 37 37 H 1.09001 * 110.94408 * 155.28482 * 13 12 11 38 38 H 1.08999 * 109.47325 * 95.18965 * 17 16 14 39 39 H 1.09004 * 109.47108 * 215.18999 * 17 16 14 40 40 H 1.09000 * 109.47399 * 335.18557 * 17 16 14 41 41 H 0.97006 * 119.99616 * 180.02562 * 21 20 18 42 42 H 1.08999 * 109.87833 * 300.43856 * 26 11 9 43 43 H 1.09007 * 109.88370 * 61.59786 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2902 2.3746 -0.0005 5 6 1.9099 3.6108 0.0000 6 6 3.2891 3.6979 0.0005 7 9 3.8905 4.9076 0.0016 8 6 4.0617 2.5316 0.0011 9 6 5.5348 2.6180 0.0022 10 8 6.1408 2.6535 1.0556 11 7 6.2083 2.6576 -1.1645 12 6 5.6029 2.6155 -2.5080 13 6 6.6470 3.2951 -3.4324 14 6 7.9791 2.7877 -2.8192 15 1 8.2213 1.7928 -3.1927 16 7 9.0685 3.7269 -3.0973 17 6 8.9373 5.1350 -2.7150 18 6 10.2095 3.2884 -3.7147 19 1 10.1851 2.3979 -4.3253 20 6 11.3975 3.9886 -3.5558 21 7 11.5074 4.8907 -2.6036 22 14 12.8402 3.6505 -4.6932 23 1 12.4634 2.5988 -5.6715 24 1 13.2011 4.8953 -5.4183 25 1 14.0032 3.1885 -3.8938 26 6 7.6690 2.7428 -1.3081 27 6 3.4311 1.2834 0.0057 28 9 4.1685 0.1513 0.0119 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2119 2.3141 -0.0014 33 1 1.3139 4.5114 0.0000 34 1 5.4346 1.5836 -2.8162 35 1 4.6665 3.1734 -2.5197 36 1 6.5783 4.3813 -3.3729 37 1 6.5362 2.9544 -4.4618 38 1 9.4028 5.2922 -1.7420 39 1 9.4302 5.7609 -3.4590 40 1 7.8814 5.3997 -2.6597 41 1 12.3376 5.3802 -2.4929 42 1 8.0365 3.6493 -0.8273 43 1 8.1374 1.8667 -0.8593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972766305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:19 Heat of formation + Delta-G solvation = -90.891098 kcal Electronic energy + Delta-G solvation = -30172.910010 eV Core-core repulsion = 25663.252713 eV Total energy + Delta-G solvation = -4509.657297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.19241 -49.16202 -40.52237 -39.73094 -37.78823 -37.09307 -34.80154 -32.05422 -31.26695 -30.39254 -29.69479 -27.99129 -27.71018 -26.04220 -24.77156 -23.22041 -22.85157 -22.35107 -20.05179 -19.21875 -18.51541 -18.07148 -18.02633 -17.10207 -16.99762 -16.57748 -16.11123 -15.96541 -15.66483 -15.37311 -15.25049 -15.15449 -14.75934 -14.70084 -13.97546 -13.50446 -13.39924 -13.33243 -12.92119 -12.70022 -12.63433 -12.52049 -12.36562 -12.17458 -11.92570 -11.75950 -11.54955 -11.40726 -10.94544 -10.80784 -10.56954 -10.47471 -10.27889 -10.03947 -9.85536 -9.79971 -9.44183 -8.58639 -8.58209 -8.38461 -6.81486 -5.76300 -3.24634 0.32506 0.58314 2.35910 2.69178 2.78714 3.15322 3.37004 3.44255 3.46336 3.47591 3.89184 4.07408 4.30605 4.39088 4.46548 4.63256 4.65482 4.79546 4.96690 4.99711 5.22028 5.25039 5.28114 5.39066 5.46728 5.48662 5.52065 5.58811 5.76503 5.88120 5.98935 6.02262 6.32473 6.35590 6.47448 6.63257 6.70574 6.81836 6.85990 7.31498 7.65278 7.71613 7.78203 8.16528 8.34981 9.17761 9.80287 10.29645 11.27778 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023027 B = 0.002727 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.690009 B =10264.381301 C =10672.728046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.304 6.304 3 C 0.086 3.914 4 C -0.143 4.143 5 C -0.122 4.122 6 C 0.126 3.874 7 F -0.119 7.119 8 C -0.147 4.147 9 C 0.574 3.426 10 O -0.521 6.521 11 N -0.597 5.597 12 C 0.099 3.901 13 C -0.151 4.151 14 C 0.173 3.827 15 H 0.081 0.919 16 N -0.584 5.584 17 C 0.157 3.843 18 C -0.262 4.262 19 H 0.071 0.929 20 C 0.005 3.995 21 N -0.901 5.901 22 Si 0.906 3.094 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.086 3.914 27 C 0.133 3.867 28 F -0.112 7.112 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.033 0.967 39 H 0.042 0.958 40 H 0.004 0.996 41 H 0.253 0.747 42 H 0.077 0.923 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.796 -5.506 2.553 27.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.039 3.961 4 C -0.162 4.162 5 C -0.141 4.141 6 C 0.106 3.894 7 F -0.097 7.097 8 C -0.152 4.152 9 C 0.359 3.641 10 O -0.398 6.398 11 N -0.330 5.330 12 C -0.024 4.024 13 C -0.191 4.191 14 C 0.063 3.937 15 H 0.099 0.901 16 N -0.304 5.304 17 C 0.013 3.987 18 C -0.392 4.392 19 H 0.089 0.911 20 C -0.194 4.194 21 N -0.545 5.545 22 Si 0.736 3.264 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.217 1.217 26 C -0.038 4.038 27 C 0.112 3.888 28 F -0.090 7.090 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.170 0.830 33 H 0.171 0.829 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.023 0.977 41 H 0.064 0.936 42 H 0.095 0.905 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -26.153 -5.548 3.205 26.926 hybrid contribution 0.768 0.054 -0.415 0.875 sum -25.384 -5.493 2.790 26.121 Atomic orbital electron populations 1.23192 0.77484 1.04723 1.01660 1.86194 1.21999 1.24907 1.88653 1.18749 0.90141 0.86208 1.00987 1.21050 1.00813 0.90290 1.04000 1.20927 0.91980 0.99265 1.01956 1.17168 0.90197 0.79491 1.02581 1.91598 1.83806 1.40837 1.93456 1.19859 0.95552 0.91748 1.08025 1.17240 0.85094 0.78142 0.83649 1.90843 1.68631 1.49885 1.30428 1.48493 1.09186 1.70274 1.05017 1.22432 0.97149 1.00713 0.82126 1.23391 0.95890 1.01449 0.98411 1.21376 0.87982 0.94655 0.89705 0.90114 1.43939 1.14760 1.03543 1.68156 1.20819 0.93959 0.83885 1.00056 1.19250 0.86185 1.11359 1.22375 0.91107 1.25078 0.97328 0.99498 0.97514 1.70093 1.25971 1.27612 1.30817 0.86166 0.82435 0.77572 0.80219 1.20228 1.21570 1.21689 1.23067 0.76881 1.02507 1.01330 1.16420 0.85816 0.81551 1.05040 1.91586 1.76383 1.47604 1.93455 0.92122 0.92184 0.87617 0.83001 0.82931 0.91240 0.91551 0.90227 0.90170 0.94831 0.93942 0.97741 0.93633 0.90475 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.30 -2.82 10.36 -19.78 -0.20 -3.03 16 3 C 0.09 0.86 6.68 -39.26 -0.26 0.60 16 4 C -0.14 -1.01 9.03 -39.39 -0.36 -1.37 16 5 C -0.12 -1.00 10.00 -39.58 -0.40 -1.39 16 6 C 0.13 1.55 7.28 -38.97 -0.28 1.27 16 7 F -0.12 -1.69 16.83 2.25 0.04 -1.65 16 8 C -0.15 -2.14 4.53 -104.87 -0.48 -2.62 16 9 C 0.57 10.66 6.57 -12.46 -0.08 10.58 16 10 O -0.52 -11.66 17.43 5.29 0.09 -11.57 16 11 N -0.60 -10.64 3.32 -171.60 -0.57 -11.21 16 12 C 0.10 1.42 6.69 -2.41 -0.02 1.40 16 13 C -0.15 -2.43 6.60 -24.46 -0.16 -2.59 16 14 C 0.17 3.46 3.44 -66.09 -0.23 3.24 16 15 H 0.08 1.58 7.94 -51.93 -0.41 1.17 16 16 N -0.58 -14.28 2.93 -171.39 -0.50 -14.78 16 17 C 0.16 3.83 7.75 59.84 0.46 4.30 16 18 C -0.26 -7.04 9.59 -15.06 -0.14 -7.19 16 19 H 0.07 1.85 7.85 -52.49 -0.41 1.43 16 20 C 0.01 0.14 5.07 -17.43 -0.09 0.05 16 21 N -0.90 -26.22 10.83 55.49 0.60 -25.62 16 22 Si 0.91 21.63 29.58 -169.99 -5.03 16.61 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.09 1.75 6.50 -3.07 -0.02 1.73 16 27 C 0.13 1.77 7.30 -38.83 -0.28 1.49 16 28 F -0.11 -1.71 16.67 2.25 0.04 -1.68 16 29 H 0.06 0.16 7.65 -51.93 -0.40 -0.24 16 30 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16 31 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.15 0.52 6.27 -52.49 -0.33 0.19 16 33 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.83 7.69 -51.93 -0.40 0.43 16 36 H 0.08 1.36 6.14 -51.93 -0.32 1.04 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.03 0.91 7.25 -51.93 -0.38 0.53 16 39 H 0.04 1.10 7.42 -51.93 -0.39 0.72 16 40 H 0.00 0.09 6.13 -51.93 -0.32 -0.23 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.08 1.78 7.06 -51.93 -0.37 1.41 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 364.11 15.07 5.49 5.49 Total: -1.00 -33.91 364.11 -6.75 -40.66 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -5.36 Total: -3.80 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: -1.34 Total: 10.58 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.47 Total: -51.61 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.11 Total: -14.60 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.08 Total: -3.32 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.91 -6.75 -40.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972766305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.233 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds