Wall clock time and date at job start Sat Apr 11 2020 05:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36940 * 120.00004 * 2 1 4 4 H 1.07998 * 120.00020 * 203.24221 * 3 2 1 5 5 C 1.38806 * 120.00135 * 23.24480 * 3 2 1 6 6 N 1.31624 * 120.00060 * 13.76434 * 5 3 2 7 7 Si 1.86801 * 120.00240 * 193.76896 * 5 3 2 8 8 H 1.48497 * 109.47000 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47480 * 119.99895 * 7 5 3 10 10 H 1.48497 * 109.46802 * 239.99874 * 7 5 3 11 11 C 1.46499 * 119.99924 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.88259 * 183.88194 * 11 2 1 13 13 C 1.55157 * 111.00386 * 60.00392 * 11 2 1 14 14 C 1.54325 * 102.94479 * 206.38403 * 13 11 2 15 15 N 1.47022 * 107.26931 * 22.19257 * 14 13 11 16 16 C 1.34775 * 125.64810 * 181.02434 * 15 14 13 17 17 O 1.21286 * 119.99619 * 180.02562 * 16 15 14 18 18 C 1.50697 * 119.99929 * 0.02562 * 16 15 14 19 19 O 1.42906 * 109.46935 * 180.02562 * 18 16 15 20 20 C 1.35946 * 116.99721 * 180.02562 * 19 18 16 21 21 C 1.38647 * 120.05292 * 359.97438 * 20 19 18 22 22 C 1.38379 * 119.94817 * 179.97438 * 21 20 19 23 23 F 1.35094 * 119.98080 * 180.02562 * 22 21 20 24 24 C 1.38481 * 120.04114 * 0.27701 * 22 21 20 25 25 C 1.38241 * 120.10117 * 359.44679 * 24 22 21 26 26 C 1.38325 * 120.05434 * 0.55617 * 25 24 22 27 27 F 1.35095 * 120.02479 * 179.70325 * 26 25 24 28 28 C 1.47427 * 108.70317 * 1.28485 * 15 14 13 29 29 H 1.08994 * 109.47253 * 275.16412 * 1 2 3 30 30 H 1.09001 * 109.46548 * 35.16134 * 1 2 3 31 31 H 1.09001 * 109.46583 * 155.15772 * 1 2 3 32 32 H 0.96999 * 120.00419 * 180.02562 * 6 5 3 33 33 H 1.09004 * 110.71891 * 88.01737 * 13 11 2 34 34 H 1.08994 * 110.87497 * 324.82248 * 13 11 2 35 35 H 1.08999 * 109.87957 * 262.77695 * 14 13 11 36 36 H 1.08999 * 110.01186 * 141.68385 * 14 13 11 37 37 H 1.09000 * 109.47191 * 60.00171 * 18 16 15 38 38 H 1.09001 * 109.47214 * 299.99659 * 18 16 15 39 39 H 1.08000 * 120.02289 * 359.96161 * 21 20 19 40 40 H 1.07999 * 119.94776 * 179.72603 * 24 22 21 41 41 H 1.07997 * 119.97441 * 180.27437 * 25 24 22 42 42 H 1.09002 * 110.36256 * 94.48307 * 28 15 14 43 43 H 1.08998 * 110.36908 * 216.80238 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1640 1.2239 -0.3691 5 6 1.5402 2.3393 0.4744 6 7 0.4240 2.2566 1.1670 7 14 2.3040 4.0088 0.1298 8 1 3.5471 3.8304 -0.6626 9 1 1.3440 4.8439 -0.6358 10 1 2.6284 4.6793 1.4145 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0972 0.0694 13 6 1.8484 -2.1130 -1.2535 14 6 2.1073 -3.5588 -0.7800 15 7 2.0279 -3.5581 0.6881 16 6 2.2154 -4.6284 1.4854 17 8 2.1247 -4.5111 2.6892 18 6 2.5379 -5.9707 0.8812 19 8 2.6892 -6.9377 1.9224 20 6 2.9846 -8.2099 1.5450 21 6 3.1252 -8.5205 0.2011 22 6 3.4264 -9.8161 -0.1807 23 9 3.5641 -10.1193 -1.4899 24 6 3.5818 -10.8030 0.7783 25 6 3.4477 -10.4942 2.1190 26 6 3.1466 -9.2005 2.5052 27 9 3.0097 -8.9007 3.8154 28 6 1.7030 -2.1940 1.1433 29 1 -0.3633 0.0925 1.0234 30 1 -0.3632 0.8402 -0.5918 31 1 -0.3632 -0.9326 -0.4318 32 1 -0.0021 3.0625 1.4983 33 1 2.5040 -1.8565 -2.0858 34 1 0.8033 -1.9799 -1.5327 35 1 3.0991 -3.8808 -1.0974 36 1 1.3513 -4.2272 -1.1918 37 1 3.4653 -5.9001 0.3128 38 1 1.7277 -6.2749 0.2184 39 1 2.9995 -7.7520 -0.5472 40 1 3.8125 -11.8145 0.4784 41 1 3.5737 -11.2646 2.8654 42 1 0.6272 -2.0868 1.2826 43 1 2.2307 -1.9674 2.0696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972774681.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:23 Heat of formation + Delta-G solvation = -95.263035 kcal Electronic energy + Delta-G solvation = -28822.802514 eV Core-core repulsion = 24312.955635 eV Total energy + Delta-G solvation = -4509.846878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.41603 -49.09609 -40.70345 -39.63421 -37.94254 -37.15811 -34.90736 -31.90406 -31.17094 -30.65513 -29.91126 -28.96672 -27.34912 -26.11646 -24.08368 -23.11137 -23.01931 -22.41773 -19.53049 -19.37228 -19.19296 -17.77692 -17.74672 -17.21367 -16.97507 -16.89451 -16.43728 -16.14580 -15.78917 -15.54619 -15.28684 -14.92007 -14.74548 -14.61424 -14.12703 -13.88044 -13.48788 -13.36415 -13.21125 -12.79058 -12.68956 -12.49874 -12.41204 -12.24360 -12.04549 -11.83328 -11.59337 -11.46703 -10.97895 -10.86274 -10.57218 -10.56580 -10.33710 -9.96752 -9.91526 -9.77907 -9.49180 -8.68088 -8.66963 -8.48102 -6.87544 -5.82372 -3.30814 0.42311 0.58227 2.15169 2.55868 2.85728 3.26211 3.33149 3.40672 3.42444 3.61456 3.74579 4.04744 4.25767 4.39222 4.41465 4.45873 4.62951 4.66467 4.86195 4.88543 5.14812 5.20404 5.26825 5.36711 5.39126 5.48449 5.51627 5.57046 5.67352 5.78855 5.89727 6.04522 6.21196 6.27133 6.36796 6.51951 6.67469 6.71974 6.78376 7.25697 7.57291 7.64044 7.72635 8.14988 8.29003 9.11916 9.74081 10.22528 11.21891 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024605 B = 0.002054 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.716258 B =13627.314433 C =14327.242462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.584 5.584 3 C -0.263 4.263 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.902 5.902 7 Si 0.907 3.093 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.173 3.827 12 H 0.080 0.920 13 C -0.153 4.153 14 C 0.098 3.902 15 N -0.610 5.610 16 C 0.526 3.474 17 O -0.519 6.519 18 C 0.042 3.958 19 O -0.273 6.273 20 C 0.132 3.868 21 C -0.224 4.224 22 C 0.132 3.868 23 F -0.131 7.131 24 C -0.165 4.165 25 C -0.086 4.086 26 C 0.064 3.936 27 F -0.123 7.123 28 C 0.089 3.911 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.003 0.997 32 H 0.254 0.746 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.154 0.846 42 H 0.071 0.929 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.082 -25.757 -5.491 26.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.304 5.304 3 C -0.392 4.392 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.546 5.546 7 Si 0.737 3.263 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.062 3.938 12 H 0.098 0.902 13 C -0.193 4.193 14 C -0.025 4.025 15 N -0.346 5.346 16 C 0.312 3.688 17 O -0.394 6.394 18 C -0.037 4.037 19 O -0.185 6.185 20 C 0.084 3.916 21 C -0.244 4.244 22 C 0.113 3.887 23 F -0.109 7.109 24 C -0.184 4.184 25 C -0.105 4.105 26 C 0.044 3.956 27 F -0.102 7.102 28 C -0.034 4.034 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.021 0.979 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.170 0.830 40 H 0.166 0.834 41 H 0.172 0.828 42 H 0.089 0.911 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.886 -25.468 -4.514 26.322 hybrid contribution 0.254 0.929 -0.464 1.069 sum 5.140 -24.538 -4.978 25.560 Atomic orbital electron populations 1.20830 0.82408 0.95659 0.99785 1.43880 1.01908 0.99840 1.84751 1.19240 0.98821 0.85101 1.36060 0.91110 1.25084 0.97919 0.98775 0.97606 1.70078 1.19903 1.27443 1.37150 0.86152 0.78542 0.84025 0.77596 1.20223 1.21526 1.21631 1.21512 0.96498 0.85730 0.90029 0.90205 1.23225 1.03057 0.92335 1.00726 1.22142 1.00760 0.99776 0.79862 1.48421 1.69242 1.09493 1.07461 1.19411 0.78567 0.84026 0.86788 1.90781 1.50245 1.84414 1.13938 1.22646 1.03498 0.87525 0.89981 1.86283 1.84120 1.14358 1.33707 1.18778 0.96249 0.84873 0.91722 1.21099 1.10356 0.97621 0.95282 1.17330 1.00110 0.92958 0.78319 1.91540 1.93014 1.93642 1.32731 1.20910 1.05852 1.00123 0.91527 1.20866 0.98613 0.94264 0.96726 1.16983 1.08442 0.92292 0.77897 1.91564 1.93496 1.93710 1.31382 1.23227 1.01223 0.78450 1.00549 0.94775 0.93839 0.97903 0.93576 0.90388 0.90374 0.91663 0.91878 0.88541 0.88605 0.83038 0.83437 0.82787 0.91059 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.65 7.57 59.85 0.45 4.10 16 2 N -0.58 -13.69 2.96 -170.90 -0.51 -14.20 16 3 C -0.26 -6.88 9.60 -15.06 -0.14 -7.02 16 4 H 0.07 1.80 7.87 -52.49 -0.41 1.39 16 5 C 0.01 0.15 5.08 -17.43 -0.09 0.06 16 6 N -0.90 -25.59 10.77 55.49 0.60 -24.99 16 7 Si 0.91 21.21 29.58 -169.99 -5.03 16.19 16 8 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 9 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 C 0.17 3.25 3.55 -65.66 -0.23 3.01 16 12 H 0.08 1.52 7.96 -51.93 -0.41 1.10 16 13 C -0.15 -2.19 6.49 -24.90 -0.16 -2.35 16 14 C 0.10 1.11 6.48 -3.06 -0.02 1.09 16 15 N -0.61 -9.14 3.32 -170.38 -0.57 -9.71 16 16 C 0.53 8.20 7.93 -10.99 -0.09 8.12 16 17 O -0.52 -10.61 16.75 -14.36 -0.24 -10.85 16 18 C 0.04 0.45 4.41 36.00 0.16 0.61 16 19 O -0.27 -3.63 9.53 -39.48 -0.38 -4.01 16 20 C 0.13 1.39 6.69 -39.18 -0.26 1.13 16 21 C -0.22 -1.84 9.01 -39.38 -0.35 -2.20 16 22 C 0.13 1.02 7.30 -39.44 -0.29 0.74 16 23 F -0.13 -1.08 17.27 2.25 0.04 -1.04 16 24 C -0.17 -1.04 10.02 -39.49 -0.40 -1.43 16 25 C -0.09 -0.59 10.02 -39.55 -0.40 -0.99 16 26 C 0.06 0.65 7.31 -39.30 -0.29 0.37 16 27 F -0.12 -1.54 17.11 2.25 0.04 -1.50 16 28 C 0.09 1.65 6.46 -2.41 -0.02 1.63 16 29 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 30 H 0.04 1.08 7.38 -51.93 -0.38 0.70 16 31 H 0.00 0.05 6.37 -51.93 -0.33 -0.28 16 32 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.17 6.47 -51.93 -0.34 0.84 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.77 7.66 -51.93 -0.40 0.37 16 38 H 0.10 0.76 7.66 -51.93 -0.40 0.37 16 39 H 0.15 0.95 6.30 -52.49 -0.33 0.62 16 40 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 41 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.07 1.41 6.97 -51.93 -0.36 1.05 16 43 H 0.08 1.56 8.03 -51.93 -0.42 1.14 16 LS Contribution 365.38 15.07 5.51 5.51 Total: -1.00 -32.68 365.38 -8.07 -40.75 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -5.41 Total: -3.02 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -2.12 Total: 6.87 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.47 Total: -48.90 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.62 Total: -14.86 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.08 Total: -2.54 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.68 -8.07 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972774681.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.513 kcal (2) G-P(sol) polarization free energy of solvation -32.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds