Wall clock time and date at job start Sat Apr 11 2020 05:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36940 * 120.00004 * 2 1 4 4 H 1.07998 * 120.00020 * 203.24221 * 3 2 1 5 5 C 1.38806 * 120.00135 * 23.24480 * 3 2 1 6 6 N 1.31624 * 120.00060 * 13.76434 * 5 3 2 7 7 Si 1.86801 * 120.00240 * 193.76896 * 5 3 2 8 8 H 1.48497 * 109.47000 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47480 * 119.99895 * 7 5 3 10 10 H 1.48497 * 109.46802 * 239.99874 * 7 5 3 11 11 C 1.46499 * 119.99924 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.88259 * 183.88194 * 11 2 1 13 13 C 1.55157 * 111.00386 * 60.00392 * 11 2 1 14 14 C 1.54325 * 102.94479 * 206.38403 * 13 11 2 15 15 N 1.47022 * 107.26931 * 22.19257 * 14 13 11 16 16 C 1.34775 * 125.64810 * 181.02434 * 15 14 13 17 17 O 1.21286 * 119.99619 * 180.02562 * 16 15 14 18 18 C 1.50697 * 119.99929 * 0.02562 * 16 15 14 19 19 O 1.42906 * 109.46935 * 180.02562 * 18 16 15 20 20 C 1.35946 * 116.99721 * 180.02562 * 19 18 16 21 21 C 1.38647 * 120.05292 * 359.97438 * 20 19 18 22 22 C 1.38379 * 119.94817 * 179.97438 * 21 20 19 23 23 F 1.35094 * 119.98080 * 180.02562 * 22 21 20 24 24 C 1.38481 * 120.04114 * 0.27701 * 22 21 20 25 25 C 1.38241 * 120.10117 * 359.44679 * 24 22 21 26 26 C 1.38325 * 120.05434 * 0.55617 * 25 24 22 27 27 F 1.35095 * 120.02479 * 179.70325 * 26 25 24 28 28 C 1.47427 * 108.70317 * 1.28485 * 15 14 13 29 29 H 1.08994 * 109.47253 * 275.16412 * 1 2 3 30 30 H 1.09001 * 109.46548 * 35.16134 * 1 2 3 31 31 H 1.09001 * 109.46583 * 155.15772 * 1 2 3 32 32 H 0.96999 * 120.00419 * 180.02562 * 6 5 3 33 33 H 1.09004 * 110.71891 * 88.01737 * 13 11 2 34 34 H 1.08994 * 110.87497 * 324.82248 * 13 11 2 35 35 H 1.08999 * 109.87957 * 262.77695 * 14 13 11 36 36 H 1.08999 * 110.01186 * 141.68385 * 14 13 11 37 37 H 1.09000 * 109.47191 * 60.00171 * 18 16 15 38 38 H 1.09001 * 109.47214 * 299.99659 * 18 16 15 39 39 H 1.08000 * 120.02289 * 359.96161 * 21 20 19 40 40 H 1.07999 * 119.94776 * 179.72603 * 24 22 21 41 41 H 1.07997 * 119.97441 * 180.27437 * 25 24 22 42 42 H 1.09002 * 110.36256 * 94.48307 * 28 15 14 43 43 H 1.08998 * 110.36908 * 216.80238 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1640 1.2239 -0.3691 5 6 1.5402 2.3393 0.4744 6 7 0.4240 2.2566 1.1670 7 14 2.3040 4.0088 0.1298 8 1 3.5471 3.8304 -0.6626 9 1 1.3440 4.8439 -0.6358 10 1 2.6284 4.6793 1.4145 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0972 0.0694 13 6 1.8484 -2.1130 -1.2535 14 6 2.1073 -3.5588 -0.7800 15 7 2.0279 -3.5581 0.6881 16 6 2.2154 -4.6284 1.4854 17 8 2.1247 -4.5111 2.6892 18 6 2.5379 -5.9707 0.8812 19 8 2.6892 -6.9377 1.9224 20 6 2.9846 -8.2099 1.5450 21 6 3.1252 -8.5205 0.2011 22 6 3.4264 -9.8161 -0.1807 23 9 3.5641 -10.1193 -1.4899 24 6 3.5818 -10.8030 0.7783 25 6 3.4477 -10.4942 2.1190 26 6 3.1466 -9.2005 2.5052 27 9 3.0097 -8.9007 3.8154 28 6 1.7030 -2.1940 1.1433 29 1 -0.3633 0.0925 1.0234 30 1 -0.3632 0.8402 -0.5918 31 1 -0.3632 -0.9326 -0.4318 32 1 -0.0021 3.0625 1.4983 33 1 2.5040 -1.8565 -2.0858 34 1 0.8033 -1.9799 -1.5327 35 1 3.0991 -3.8808 -1.0974 36 1 1.3513 -4.2272 -1.1918 37 1 3.4653 -5.9001 0.3128 38 1 1.7277 -6.2749 0.2184 39 1 2.9995 -7.7520 -0.5472 40 1 3.8125 -11.8145 0.4784 41 1 3.5737 -11.2646 2.8654 42 1 0.6272 -2.0868 1.2826 43 1 2.2307 -1.9674 2.0696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972774681.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:22 Heat of formation + Delta-G solvation = -114.949832 kcal Electronic energy + Delta-G solvation = -28823.656197 eV Core-core repulsion = 24312.955635 eV Total energy + Delta-G solvation = -4510.700562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.99534 -49.90141 -41.61632 -40.69790 -39.03720 -38.18916 -36.59612 -33.59731 -31.83430 -31.66809 -31.07826 -30.01047 -28.54724 -28.06444 -25.35915 -24.17915 -23.69287 -23.63744 -21.02324 -20.51490 -19.92845 -18.96484 -18.56092 -18.44639 -17.95279 -17.90127 -17.37562 -17.22252 -16.75191 -16.49772 -16.39875 -16.09101 -15.57006 -15.48260 -15.37909 -15.02849 -14.82293 -14.62888 -14.37320 -14.20790 -13.93945 -13.68292 -13.48014 -13.15691 -13.12995 -13.10221 -12.81996 -12.50863 -12.41792 -12.38984 -12.18941 -12.13317 -12.04918 -11.82567 -11.41713 -11.07293 -10.66677 -10.06649 -9.76721 -9.35283 -8.81057 -7.85305 -5.35759 -0.17423 -0.00098 1.23707 1.39263 1.46674 1.48179 1.58333 2.27551 2.28719 2.50980 3.01578 3.10174 3.23494 3.30109 3.53645 3.58090 3.79543 3.86990 3.89132 3.98430 4.00465 4.01095 4.20653 4.34430 4.36577 4.44158 4.65324 4.68677 4.78986 4.84979 4.87091 4.94816 4.99608 5.01434 5.11554 5.21315 5.30404 5.43733 5.49398 5.64128 5.70002 6.00754 6.30108 6.41848 6.96317 7.11704 7.82378 8.26139 9.17363 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024605 B = 0.002054 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.716258 B =13627.314433 C =14327.242462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.601 5.601 3 C -0.264 4.264 4 H 0.077 0.923 5 C -0.054 4.054 6 N -0.938 5.938 7 Si 0.970 3.030 8 H -0.262 1.262 9 H -0.291 1.291 10 H -0.297 1.297 11 C 0.165 3.835 12 H 0.076 0.924 13 C -0.140 4.140 14 C 0.099 3.901 15 N -0.607 5.607 16 C 0.519 3.481 17 O -0.583 6.583 18 C 0.050 3.950 19 O -0.312 6.312 20 C 0.111 3.889 21 C -0.217 4.217 22 C 0.128 3.872 23 F -0.132 7.132 24 C -0.152 4.152 25 C -0.075 4.075 26 C 0.032 3.968 27 F -0.147 7.147 28 C 0.098 3.902 29 H -0.002 1.002 30 H 0.018 0.982 31 H 0.038 0.962 32 H 0.248 0.752 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.175 0.825 40 H 0.178 0.822 41 H 0.180 0.820 42 H 0.052 0.948 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.532 -28.750 -8.744 30.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.322 5.322 3 C -0.394 4.394 4 H 0.095 0.905 5 C -0.249 4.249 6 N -0.584 5.584 7 Si 0.799 3.201 8 H -0.186 1.186 9 H -0.217 1.217 10 H -0.225 1.225 11 C 0.056 3.944 12 H 0.094 0.906 13 C -0.179 4.179 14 C -0.022 4.022 15 N -0.342 5.342 16 C 0.308 3.692 17 O -0.462 6.462 18 C -0.027 4.027 19 O -0.225 6.225 20 C 0.064 3.936 21 C -0.236 4.236 22 C 0.108 3.892 23 F -0.110 7.110 24 C -0.171 4.171 25 C -0.093 4.093 26 C 0.012 3.988 27 F -0.125 7.125 28 C -0.027 4.027 29 H 0.017 0.983 30 H 0.036 0.964 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.192 0.808 40 H 0.195 0.805 41 H 0.197 0.803 42 H 0.070 0.930 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.371 -28.517 -7.837 30.253 hybrid contribution -0.147 1.712 0.530 1.798 sum 6.223 -26.805 -7.307 28.471 Atomic orbital electron populations 1.20509 0.82697 0.96264 0.97435 1.44070 1.02068 1.00954 1.85118 1.19614 0.98995 0.86278 1.34537 0.90510 1.25868 0.98729 1.02172 0.98180 1.70253 1.21533 1.27695 1.38953 0.85157 0.78150 0.79868 0.76967 1.18590 1.21740 1.22453 1.21693 0.95750 0.84488 0.92508 0.90624 1.23075 1.03189 0.93032 0.98621 1.22445 1.04420 0.98428 0.76953 1.48423 1.68637 1.07845 1.09265 1.20373 0.77058 0.85673 0.86093 1.90752 1.53002 1.85560 1.16913 1.22722 1.06509 0.84155 0.89311 1.86218 1.85089 1.15771 1.35409 1.18929 0.97906 0.83886 0.92837 1.21246 1.09358 0.98524 0.94500 1.17483 1.00057 0.93184 0.78472 1.91545 1.93014 1.93619 1.32836 1.21265 1.03805 1.01238 0.90758 1.21153 0.97048 0.93366 0.97742 1.17535 1.10331 0.93862 0.77101 1.91497 1.93939 1.94041 1.33057 1.22762 0.99459 0.81280 0.99211 0.98318 0.96354 0.94373 0.94279 0.88343 0.90878 0.87752 0.88050 0.84888 0.84951 0.80775 0.80476 0.80251 0.92957 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.37 7.57 127.77 0.97 9.33 16 2 N -0.60 -28.57 2.96 -694.60 -2.05 -30.62 16 3 C -0.26 -13.97 9.60 84.03 0.81 -13.16 16 4 H 0.08 3.88 7.87 -2.91 -0.02 3.86 16 5 C -0.05 -2.99 5.08 84.86 0.43 -2.56 16 6 N -0.94 -55.45 10.77 21.65 0.23 -55.22 16 7 Si 0.97 44.40 29.58 68.60 2.03 46.43 16 8 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 9 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 10 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 11 C 0.16 6.08 3.55 46.46 0.16 6.24 16 12 H 0.08 2.83 7.96 -2.39 -0.02 2.81 16 13 C -0.14 -3.52 6.49 31.78 0.21 -3.31 16 14 C 0.10 1.78 6.48 86.73 0.56 2.34 16 15 N -0.61 -17.21 3.32 -811.35 -2.70 -19.90 16 16 C 0.52 15.76 7.93 87.66 0.69 16.46 16 17 O -0.58 -24.89 16.75 15.99 0.27 -24.62 16 18 C 0.05 0.94 4.41 71.23 0.31 1.25 16 19 O -0.31 -8.03 9.53 -73.91 -0.70 -8.73 16 20 C 0.11 2.18 6.69 22.53 0.15 2.33 16 21 C -0.22 -2.83 9.01 22.40 0.20 -2.63 16 22 C 0.13 1.51 7.30 22.36 0.16 1.67 16 23 F -0.13 -1.66 17.27 44.97 0.78 -0.88 16 24 C -0.15 -1.35 10.02 22.33 0.22 -1.13 16 25 C -0.07 -0.84 10.02 22.29 0.22 -0.62 16 26 C 0.03 0.62 7.31 22.45 0.16 0.79 16 27 F -0.15 -3.79 17.11 44.97 0.77 -3.02 16 28 C 0.10 3.72 6.46 86.93 0.56 4.28 16 29 H 0.00 -0.08 7.33 -2.39 -0.02 -0.10 16 30 H 0.02 0.93 7.38 -2.39 -0.02 0.91 16 31 H 0.04 1.50 6.37 -2.39 -0.02 1.49 16 32 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.07 1.95 6.47 -2.39 -0.02 1.94 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 36 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.13 1.48 7.66 -2.39 -0.02 1.46 16 38 H 0.13 1.48 7.66 -2.39 -0.02 1.46 16 39 H 0.17 1.31 6.30 -2.91 -0.02 1.29 16 40 H 0.18 0.52 8.06 -2.91 -0.02 0.49 16 41 H 0.18 1.00 8.06 -2.91 -0.02 0.97 16 42 H 0.05 2.16 6.97 -2.39 -0.02 2.14 16 43 H 0.04 1.78 8.03 -2.39 -0.02 1.76 16 Total: -1.00 -78.49 365.38 5.50 -72.98 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: 1.05 Total: 2.29 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 5.84 Total: 21.29 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -4.52 Total: -105.74 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.44 Total: -33.35 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 1.55 Total: -3.90 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -78.49 5.50 -72.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972774681.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.965 kcal (2) G-P(sol) polarization free energy of solvation -78.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds