Wall clock time and date at job start Sat Apr 11 2020 05:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36933 * 119.99964 * 2 1 4 4 H 1.07996 * 120.00354 * 203.31343 * 3 2 1 5 5 C 1.38815 * 119.99995 * 23.32028 * 3 2 1 6 6 N 1.31626 * 119.99875 * 14.00371 * 5 3 2 7 7 Si 1.86792 * 120.00327 * 194.00688 * 5 3 2 8 8 H 1.48498 * 109.47197 * 59.99548 * 7 5 3 9 9 H 1.48496 * 109.47473 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.47131 * 299.99633 * 7 5 3 11 11 C 1.46505 * 120.00179 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.88460 * 182.42389 * 11 2 1 13 13 C 1.55160 * 111.03248 * 306.32480 * 11 2 1 14 14 C 1.54331 * 103.02050 * 153.40000 * 13 11 2 15 15 N 1.47025 * 107.26336 * 338.13825 * 14 13 11 16 16 C 1.34778 * 125.64572 * 178.85270 * 15 14 13 17 17 O 1.21283 * 119.99622 * 179.69354 * 16 15 14 18 18 C 1.50695 * 120.00188 * 359.69105 * 16 15 14 19 19 O 1.42897 * 109.47478 * 180.02562 * 18 16 15 20 20 C 1.35949 * 117.00399 * 179.97438 * 19 18 16 21 21 C 1.38644 * 120.04811 * 0.02562 * 20 19 18 22 22 C 1.38381 * 119.94539 * 179.97438 * 21 20 19 23 23 F 1.35102 * 119.97854 * 179.97438 * 22 21 20 24 24 C 1.38482 * 120.04539 * 359.97438 * 22 21 20 25 25 C 1.38245 * 120.09564 * 0.02562 * 24 22 21 26 26 C 1.38326 * 120.05652 * 359.75310 * 25 24 22 27 27 F 1.35095 * 120.02012 * 180.25410 * 26 25 24 28 28 C 1.47422 * 108.70141 * 358.58548 * 15 14 13 29 29 H 1.09004 * 109.47115 * 275.15988 * 1 2 3 30 30 H 1.08999 * 109.47498 * 35.16423 * 1 2 3 31 31 H 1.09005 * 109.47087 * 155.16274 * 1 2 3 32 32 H 0.96994 * 119.99912 * 180.02562 * 6 5 3 33 33 H 1.09009 * 110.71772 * 271.95630 * 13 11 2 34 34 H 1.09006 * 110.71925 * 35.04902 * 13 11 2 35 35 H 1.09003 * 109.99034 * 218.66201 * 14 13 11 36 36 H 1.08999 * 109.78082 * 97.49590 * 14 13 11 37 37 H 1.09007 * 109.47299 * 59.99976 * 18 16 15 38 38 H 1.09007 * 109.47313 * 300.00249 * 18 16 15 39 39 H 1.07992 * 120.02844 * 359.97438 * 21 20 19 40 40 H 1.07997 * 119.94998 * 180.02562 * 24 22 21 41 41 H 1.07997 * 119.96866 * 180.02562 * 25 24 22 42 42 H 1.09002 * 110.36319 * 143.19710 * 28 15 14 43 43 H 1.08999 * 110.37035 * 265.51216 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1635 1.2241 -0.3701 5 6 1.5406 2.3389 0.4759 6 7 0.4277 2.2554 1.1738 7 14 2.3003 4.0091 0.1259 8 1 2.3737 4.2218 -1.3419 9 1 1.4633 5.0719 0.7383 10 1 3.6678 4.0616 0.7027 11 6 2.1975 -1.2687 -0.0006 12 1 3.2730 -1.0965 0.0426 13 6 1.7331 -2.1805 1.1658 14 6 2.0342 -3.5995 0.6391 15 7 2.1000 -3.5158 -0.8273 16 6 2.3653 -4.5406 -1.6615 17 8 2.3887 -4.3565 -2.8600 18 6 2.6327 -5.9153 -1.1050 19 8 2.8859 -6.8231 -2.1791 20 6 3.1479 -8.1150 -1.8466 21 6 3.1604 -8.5003 -0.5148 22 6 3.4268 -9.8160 -0.1789 23 9 3.4396 -10.1921 1.1187 24 6 3.6803 -10.7475 -1.1718 25 6 3.6683 -10.3653 -2.5003 26 6 3.3979 -9.0522 -2.8410 27 9 3.3814 -8.6805 -4.1397 28 6 1.8215 -2.1265 -1.2344 29 1 -0.3633 0.0924 1.0235 30 1 -0.3634 0.8401 -0.5918 31 1 -0.3633 -0.9327 -0.4317 32 1 0.0020 3.0611 1.5060 33 1 2.3059 -1.9724 2.0696 34 1 0.6659 -2.0570 1.3504 35 1 1.2394 -4.2837 0.9361 36 1 2.9898 -3.9445 1.0340 37 1 1.7642 -6.2538 -0.5398 38 1 3.5019 -5.8787 -0.4481 39 1 2.9623 -7.7743 0.2597 40 1 3.8876 -11.7740 -0.9078 41 1 3.8658 -11.0935 -3.2729 42 1 2.4382 -1.8511 -2.0900 43 1 0.7648 -2.0056 -1.4728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972774682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:27 Heat of formation + Delta-G solvation = -95.278651 kcal Electronic energy + Delta-G solvation = -28799.915170 eV Core-core repulsion = 24290.067615 eV Total energy + Delta-G solvation = -4509.847556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.41651 -49.11051 -40.72172 -39.66053 -37.95606 -37.17806 -34.91386 -31.90416 -31.17957 -30.66440 -29.92347 -28.98264 -27.37501 -26.10799 -24.09830 -23.12533 -23.03284 -22.39620 -19.52558 -19.40144 -19.20729 -17.78711 -17.75716 -17.22342 -16.99100 -16.90764 -16.44726 -16.15768 -15.80144 -15.56847 -15.28794 -14.92921 -14.75111 -14.59198 -14.12640 -13.89050 -13.49925 -13.45319 -13.21673 -12.79693 -12.69075 -12.56538 -12.42298 -12.26348 -12.02065 -11.84271 -11.48013 -11.45312 -11.00687 -10.83459 -10.58568 -10.55976 -10.33923 -9.98246 -9.95465 -9.80163 -9.49979 -8.69104 -8.66171 -8.51556 -6.87770 -5.82512 -3.30494 0.41515 0.57320 2.13009 2.52233 2.84871 3.24174 3.34619 3.40460 3.42139 3.60821 3.73451 4.03868 4.24557 4.38899 4.41474 4.44667 4.62049 4.65148 4.86599 4.89004 5.16073 5.22739 5.26059 5.38298 5.39275 5.47748 5.48972 5.56161 5.64028 5.80042 5.90247 6.03506 6.18069 6.26978 6.37185 6.52867 6.68885 6.69748 6.78092 7.26239 7.53688 7.62308 7.72404 8.11072 8.29114 9.12153 9.74281 10.22532 11.21970 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024724 B = 0.002038 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.247293 B =13737.655436 C =14437.130707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.584 5.584 3 C -0.263 4.263 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.904 5.904 7 Si 0.907 3.093 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.174 3.826 12 H 0.080 0.920 13 C -0.151 4.151 14 C 0.096 3.904 15 N -0.609 5.609 16 C 0.528 3.472 17 O -0.520 6.520 18 C 0.042 3.958 19 O -0.274 6.274 20 C 0.131 3.869 21 C -0.224 4.224 22 C 0.133 3.867 23 F -0.131 7.131 24 C -0.165 4.165 25 C -0.086 4.086 26 C 0.064 3.936 27 F -0.123 7.123 28 C 0.087 3.913 29 H 0.035 0.965 30 H 0.042 0.958 31 H 0.002 0.998 32 H 0.254 0.746 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.154 0.846 42 H 0.075 0.925 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.824 -25.970 -0.246 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.304 5.304 3 C -0.393 4.393 4 H 0.087 0.913 5 C -0.193 4.193 6 N -0.548 5.548 7 Si 0.737 3.263 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.191 4.191 14 C -0.027 4.027 15 N -0.345 5.345 16 C 0.313 3.687 17 O -0.396 6.396 18 C -0.037 4.037 19 O -0.185 6.185 20 C 0.084 3.916 21 C -0.243 4.243 22 C 0.113 3.887 23 F -0.109 7.109 24 C -0.184 4.184 25 C -0.105 4.105 26 C 0.044 3.956 27 F -0.102 7.102 28 C -0.037 4.037 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.021 0.979 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.170 0.830 40 H 0.166 0.834 41 H 0.172 0.828 42 H 0.093 0.907 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.705 -25.626 -1.061 26.076 hybrid contribution 0.231 0.910 0.339 0.998 sum 4.936 -24.716 -0.722 25.214 Atomic orbital electron populations 1.20833 0.82423 0.95702 0.99726 1.43805 1.01865 0.99818 1.84909 1.19164 0.98774 0.85276 1.36060 0.91255 1.25034 0.97932 0.98659 0.97663 1.70055 1.20142 1.27616 1.36958 0.86301 0.78413 0.83500 0.78103 1.20938 1.21597 1.20830 1.21410 0.96542 0.85873 0.89900 0.90204 1.23230 1.03108 0.92136 1.00626 1.22185 1.00778 1.00090 0.79656 1.48361 1.69126 1.09624 1.07360 1.19390 0.78326 0.84495 0.86446 1.90773 1.50718 1.83605 1.14468 1.22635 1.03196 0.88473 0.89351 1.86274 1.84011 1.14759 1.33464 1.18769 0.96412 0.84559 0.91888 1.21104 1.10566 0.96989 0.95681 1.17335 1.00246 0.92473 0.78634 1.91545 1.93722 1.91753 1.33881 1.20914 1.05643 1.00566 0.91271 1.20867 0.98825 0.93637 0.97143 1.16977 1.08584 0.92085 0.77987 1.91562 1.94202 1.91909 1.32503 1.23101 1.01513 0.78381 1.00710 0.94685 0.93928 0.97922 0.93546 0.90256 0.90350 0.91808 0.91620 0.88554 0.88493 0.83017 0.83423 0.82788 0.90663 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.64 7.61 59.85 0.46 4.09 16 2 N -0.58 -13.71 2.96 -171.03 -0.51 -14.21 16 3 C -0.26 -6.91 9.60 -15.06 -0.14 -7.06 16 4 H 0.07 1.78 7.86 -52.49 -0.41 1.37 16 5 C 0.01 0.17 5.08 -17.43 -0.09 0.08 16 6 N -0.90 -25.29 10.79 55.49 0.60 -24.70 16 7 Si 0.91 21.25 29.58 -169.99 -5.03 16.22 16 8 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 C 0.17 3.25 3.54 -65.78 -0.23 3.02 16 12 H 0.08 1.51 7.95 -51.93 -0.41 1.10 16 13 C -0.15 -2.29 6.51 -24.89 -0.16 -2.45 16 14 C 0.10 1.12 6.49 -3.06 -0.02 1.10 16 15 N -0.61 -8.92 3.33 -170.52 -0.57 -9.49 16 16 C 0.53 8.00 7.93 -10.99 -0.09 7.91 16 17 O -0.52 -10.29 16.76 -14.35 -0.24 -10.53 16 18 C 0.04 0.44 4.41 36.00 0.16 0.60 16 19 O -0.27 -3.56 9.53 -39.49 -0.38 -3.94 16 20 C 0.13 1.37 6.69 -39.18 -0.26 1.11 16 21 C -0.22 -1.82 9.01 -39.38 -0.35 -2.18 16 22 C 0.13 1.02 7.30 -39.44 -0.29 0.73 16 23 F -0.13 -1.08 17.27 2.25 0.04 -1.04 16 24 C -0.16 -1.02 10.02 -39.49 -0.40 -1.42 16 25 C -0.09 -0.58 10.02 -39.55 -0.40 -0.98 16 26 C 0.06 0.64 7.31 -39.30 -0.29 0.35 16 27 F -0.12 -1.51 17.11 2.25 0.04 -1.47 16 28 C 0.09 1.53 6.46 -2.53 -0.02 1.51 16 29 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 30 H 0.04 1.07 7.39 -51.93 -0.38 0.69 16 31 H 0.00 0.05 6.34 -51.93 -0.33 -0.28 16 32 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.08 1.17 8.14 -51.92 -0.42 0.74 16 34 H 0.08 1.28 7.08 -51.93 -0.37 0.91 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.76 7.66 -51.93 -0.40 0.36 16 38 H 0.10 0.76 7.66 -51.93 -0.40 0.36 16 39 H 0.15 0.95 6.30 -52.49 -0.33 0.62 16 40 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16 41 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.07 1.42 8.04 -51.93 -0.42 1.01 16 43 H 0.07 1.32 6.33 -51.93 -0.33 0.99 16 LS Contribution 365.40 15.07 5.51 5.51 Total: -1.00 -32.27 365.40 -8.06 -40.33 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -5.41 Total: -3.11 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -2.12 Total: 6.43 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.47 Total: -48.39 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.62 Total: -14.48 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.08 Total: -2.51 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.27 -8.06 -40.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972774682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.949 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds