Wall clock time and date at job start Sat Apr 11 2020 05:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36933 * 119.99964 * 2 1 4 4 H 1.07996 * 120.00354 * 203.31343 * 3 2 1 5 5 C 1.38815 * 119.99995 * 23.32028 * 3 2 1 6 6 N 1.31626 * 119.99875 * 14.00371 * 5 3 2 7 7 Si 1.86792 * 120.00327 * 194.00688 * 5 3 2 8 8 H 1.48498 * 109.47197 * 59.99548 * 7 5 3 9 9 H 1.48496 * 109.47473 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.47131 * 299.99633 * 7 5 3 11 11 C 1.46505 * 120.00179 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.88460 * 182.42389 * 11 2 1 13 13 C 1.55160 * 111.03248 * 306.32480 * 11 2 1 14 14 C 1.54331 * 103.02050 * 153.40000 * 13 11 2 15 15 N 1.47025 * 107.26336 * 338.13825 * 14 13 11 16 16 C 1.34778 * 125.64572 * 178.85270 * 15 14 13 17 17 O 1.21283 * 119.99622 * 179.69354 * 16 15 14 18 18 C 1.50695 * 120.00188 * 359.69105 * 16 15 14 19 19 O 1.42897 * 109.47478 * 180.02562 * 18 16 15 20 20 C 1.35949 * 117.00399 * 179.97438 * 19 18 16 21 21 C 1.38644 * 120.04811 * 0.02562 * 20 19 18 22 22 C 1.38381 * 119.94539 * 179.97438 * 21 20 19 23 23 F 1.35102 * 119.97854 * 179.97438 * 22 21 20 24 24 C 1.38482 * 120.04539 * 359.97438 * 22 21 20 25 25 C 1.38245 * 120.09564 * 0.02562 * 24 22 21 26 26 C 1.38326 * 120.05652 * 359.75310 * 25 24 22 27 27 F 1.35095 * 120.02012 * 180.25410 * 26 25 24 28 28 C 1.47422 * 108.70141 * 358.58548 * 15 14 13 29 29 H 1.09004 * 109.47115 * 275.15988 * 1 2 3 30 30 H 1.08999 * 109.47498 * 35.16423 * 1 2 3 31 31 H 1.09005 * 109.47087 * 155.16274 * 1 2 3 32 32 H 0.96994 * 119.99912 * 180.02562 * 6 5 3 33 33 H 1.09009 * 110.71772 * 271.95630 * 13 11 2 34 34 H 1.09006 * 110.71925 * 35.04902 * 13 11 2 35 35 H 1.09003 * 109.99034 * 218.66201 * 14 13 11 36 36 H 1.08999 * 109.78082 * 97.49590 * 14 13 11 37 37 H 1.09007 * 109.47299 * 59.99976 * 18 16 15 38 38 H 1.09007 * 109.47313 * 300.00249 * 18 16 15 39 39 H 1.07992 * 120.02844 * 359.97438 * 21 20 19 40 40 H 1.07997 * 119.94998 * 180.02562 * 24 22 21 41 41 H 1.07997 * 119.96866 * 180.02562 * 25 24 22 42 42 H 1.09002 * 110.36319 * 143.19710 * 28 15 14 43 43 H 1.08999 * 110.37035 * 265.51216 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1635 1.2241 -0.3701 5 6 1.5406 2.3389 0.4759 6 7 0.4277 2.2554 1.1738 7 14 2.3003 4.0091 0.1259 8 1 2.3737 4.2218 -1.3419 9 1 1.4633 5.0719 0.7383 10 1 3.6678 4.0616 0.7027 11 6 2.1975 -1.2687 -0.0006 12 1 3.2730 -1.0965 0.0426 13 6 1.7331 -2.1805 1.1658 14 6 2.0342 -3.5995 0.6391 15 7 2.1000 -3.5158 -0.8273 16 6 2.3653 -4.5406 -1.6615 17 8 2.3887 -4.3565 -2.8600 18 6 2.6327 -5.9153 -1.1050 19 8 2.8859 -6.8231 -2.1791 20 6 3.1479 -8.1150 -1.8466 21 6 3.1604 -8.5003 -0.5148 22 6 3.4268 -9.8160 -0.1789 23 9 3.4396 -10.1921 1.1187 24 6 3.6803 -10.7475 -1.1718 25 6 3.6683 -10.3653 -2.5003 26 6 3.3979 -9.0522 -2.8410 27 9 3.3814 -8.6805 -4.1397 28 6 1.8215 -2.1265 -1.2344 29 1 -0.3633 0.0924 1.0235 30 1 -0.3634 0.8401 -0.5918 31 1 -0.3633 -0.9327 -0.4317 32 1 0.0020 3.0611 1.5060 33 1 2.3059 -1.9724 2.0696 34 1 0.6659 -2.0570 1.3504 35 1 1.2394 -4.2837 0.9361 36 1 2.9898 -3.9445 1.0340 37 1 1.7642 -6.2538 -0.5398 38 1 3.5019 -5.8787 -0.4481 39 1 2.9623 -7.7743 0.2597 40 1 3.8876 -11.7740 -0.9078 41 1 3.8658 -11.0935 -3.2729 42 1 2.4382 -1.8511 -2.0900 43 1 0.7648 -2.0056 -1.4728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972774682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:26 Heat of formation + Delta-G solvation = -114.135619 kcal Electronic energy + Delta-G solvation = -28800.732870 eV Core-core repulsion = 24290.067615 eV Total energy + Delta-G solvation = -4510.665255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.99561 -49.89848 -41.61731 -40.70303 -39.04060 -38.18696 -36.59433 -33.58883 -31.83494 -31.67070 -31.09073 -30.01440 -28.55989 -28.05043 -25.35512 -24.17780 -23.69233 -23.64522 -21.01662 -20.52150 -19.92765 -18.97073 -18.55674 -18.44542 -17.95797 -17.90257 -17.37463 -17.21928 -16.74686 -16.46499 -16.39972 -16.10230 -15.56752 -15.47712 -15.37874 -15.07321 -14.83437 -14.63622 -14.39563 -14.23920 -13.94017 -13.68076 -13.49833 -13.14146 -13.12681 -12.96247 -12.81331 -12.51593 -12.41782 -12.39075 -12.16712 -12.15411 -12.11362 -11.85602 -11.45032 -11.07337 -10.65189 -10.06681 -9.77147 -9.35232 -8.80370 -7.85360 -5.34559 -0.17417 -0.00100 1.23552 1.39214 1.46783 1.49616 1.55444 2.27556 2.28428 2.50953 3.01643 3.09934 3.22815 3.30832 3.52555 3.57919 3.79584 3.87196 3.88795 3.97968 4.00588 4.00725 4.20222 4.32746 4.36521 4.42758 4.65284 4.67355 4.75846 4.87046 4.88281 4.94908 4.99063 5.01465 5.09861 5.22230 5.30654 5.41006 5.49296 5.63338 5.70025 6.00520 6.30313 6.40493 6.95588 7.12298 7.82533 8.26090 9.17071 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024724 B = 0.002038 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.247293 B =13737.655436 C =14437.130707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.601 5.601 3 C -0.270 4.270 4 H 0.069 0.931 5 C -0.047 4.047 6 N -0.932 5.932 7 Si 0.966 3.034 8 H -0.284 1.284 9 H -0.294 1.294 10 H -0.273 1.273 11 C 0.166 3.834 12 H 0.075 0.925 13 C -0.141 4.141 14 C 0.101 3.899 15 N -0.607 5.607 16 C 0.522 3.478 17 O -0.579 6.579 18 C 0.048 3.952 19 O -0.311 6.311 20 C 0.112 3.888 21 C -0.218 4.218 22 C 0.127 3.873 23 F -0.132 7.132 24 C -0.152 4.152 25 C -0.075 4.075 26 C 0.033 3.967 27 F -0.146 7.146 28 C 0.097 3.903 29 H 0.015 0.985 30 H 0.010 0.990 31 H 0.030 0.970 32 H 0.249 0.751 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.174 0.826 40 H 0.178 0.822 41 H 0.181 0.819 42 H 0.052 0.948 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.875 -28.978 1.448 29.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.323 5.323 3 C -0.400 4.400 4 H 0.087 0.913 5 C -0.242 4.242 6 N -0.578 5.578 7 Si 0.794 3.206 8 H -0.210 1.210 9 H -0.220 1.220 10 H -0.199 1.199 11 C 0.057 3.943 12 H 0.094 0.906 13 C -0.181 4.181 14 C -0.020 4.020 15 N -0.341 5.341 16 C 0.311 3.689 17 O -0.459 6.459 18 C -0.029 4.029 19 O -0.223 6.223 20 C 0.065 3.935 21 C -0.237 4.237 22 C 0.107 3.893 23 F -0.111 7.111 24 C -0.171 4.171 25 C -0.093 4.093 26 C 0.013 3.987 27 F -0.125 7.125 28 C -0.028 4.028 29 H 0.033 0.967 30 H 0.029 0.971 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.191 0.809 40 H 0.195 0.805 41 H 0.198 0.802 42 H 0.071 0.929 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.782 -28.688 0.668 29.272 hybrid contribution -0.056 1.720 -0.205 1.733 sum 5.726 -26.967 0.463 27.572 Atomic orbital electron populations 1.20526 0.82649 0.95681 0.98041 1.43956 1.02038 1.00901 1.85380 1.19461 0.98826 0.86679 1.34990 0.91282 1.25728 0.98681 1.01666 0.98163 1.70195 1.21411 1.27847 1.38300 0.85363 0.77868 0.79705 0.77619 1.20993 1.21984 1.19884 1.21543 0.95918 0.84832 0.92055 0.90639 1.23060 1.02338 0.93447 0.99284 1.22389 1.04204 0.98251 0.77167 1.48373 1.68681 1.08211 1.08849 1.20272 0.76816 0.86088 0.85704 1.90746 1.53253 1.84710 1.17153 1.22721 1.06126 0.85189 0.88839 1.86210 1.84924 1.16144 1.35062 1.18915 0.98018 0.83630 0.92949 1.21244 1.09680 0.97751 0.95022 1.17499 1.00288 0.92688 0.78795 1.91547 1.93741 1.91731 1.34060 1.21265 1.03612 1.01704 0.90490 1.21156 0.97291 0.92652 0.98200 1.17511 1.10392 0.93596 0.77216 1.91498 1.94606 1.92282 1.34070 1.22681 1.00143 0.80576 0.99375 0.96672 0.97090 0.95177 0.94136 0.89432 0.91506 0.88185 0.87875 0.85077 0.85037 0.80888 0.80506 0.80213 0.92950 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.32 7.61 127.77 0.97 9.30 16 2 N -0.60 -28.69 2.96 -695.01 -2.05 -30.74 16 3 C -0.27 -14.37 9.60 84.03 0.81 -13.56 16 4 H 0.07 3.60 7.86 -2.91 -0.02 3.57 16 5 C -0.05 -2.54 5.08 84.86 0.43 -2.11 16 6 N -0.93 -53.42 10.79 21.65 0.23 -53.19 16 7 Si 0.97 44.34 29.58 68.60 2.03 46.37 16 8 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 9 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 C 0.17 6.14 3.54 46.38 0.16 6.31 16 12 H 0.08 2.84 7.95 -2.39 -0.02 2.82 16 13 C -0.14 -3.98 6.51 31.79 0.21 -3.77 16 14 C 0.10 1.94 6.49 86.73 0.56 2.50 16 15 N -0.61 -16.62 3.33 -811.79 -2.70 -19.32 16 16 C 0.52 15.18 7.93 87.66 0.69 15.88 16 17 O -0.58 -23.46 16.76 16.00 0.27 -23.20 16 18 C 0.05 0.88 4.41 71.23 0.31 1.20 16 19 O -0.31 -7.77 9.53 -73.94 -0.70 -8.47 16 20 C 0.11 2.15 6.69 22.53 0.15 2.30 16 21 C -0.22 -2.85 9.01 22.40 0.20 -2.64 16 22 C 0.13 1.51 7.30 22.36 0.16 1.68 16 23 F -0.13 -1.71 17.27 44.97 0.78 -0.93 16 24 C -0.15 -1.34 10.02 22.33 0.22 -1.12 16 25 C -0.07 -0.82 10.02 22.29 0.22 -0.60 16 26 C 0.03 0.63 7.31 22.45 0.16 0.79 16 27 F -0.15 -3.66 17.11 44.97 0.77 -2.89 16 28 C 0.10 3.44 6.46 86.85 0.56 4.00 16 29 H 0.01 0.77 7.33 -2.38 -0.02 0.75 16 30 H 0.01 0.55 7.39 -2.39 -0.02 0.53 16 31 H 0.03 1.22 6.34 -2.38 -0.02 1.21 16 32 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 33 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 34 H 0.07 2.06 7.08 -2.38 -0.02 2.04 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.13 1.45 7.66 -2.38 -0.02 1.43 16 38 H 0.13 1.46 7.66 -2.38 -0.02 1.44 16 39 H 0.17 1.35 6.30 -2.91 -0.02 1.34 16 40 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 41 H 0.18 0.94 8.06 -2.91 -0.02 0.91 16 42 H 0.05 2.06 8.04 -2.39 -0.02 2.04 16 43 H 0.06 2.19 6.33 -2.39 -0.02 2.18 16 Total: -1.00 -75.20 365.40 5.50 -69.70 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 1.05 Total: 2.53 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 5.84 Total: 20.15 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -4.52 Total: -103.26 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.44 Total: -31.67 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 1.55 Total: -3.82 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -75.20 5.50 -69.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972774682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.436 kcal (2) G-P(sol) polarization free energy of solvation -75.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds