Wall clock time and date at job start Sat Apr 11 2020 05:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36939 * 119.99818 * 2 1 4 4 H 1.08004 * 119.99767 * 159.54511 * 3 2 1 5 5 C 1.38806 * 120.00113 * 339.27181 * 3 2 1 6 6 N 1.31619 * 120.00455 * 345.39163 * 5 3 2 7 7 Si 1.86808 * 119.99757 * 165.39288 * 5 3 2 8 8 H 1.48496 * 109.47047 * 94.72042 * 7 5 3 9 9 H 1.48503 * 109.46840 * 214.72002 * 7 5 3 10 10 H 1.48499 * 109.47211 * 334.71556 * 7 5 3 11 11 C 1.46500 * 120.00257 * 180.02562 * 2 1 3 12 12 H 1.08994 * 110.64270 * 180.69989 * 11 2 1 13 13 C 1.55158 * 110.71767 * 57.55388 * 11 2 1 14 14 C 1.54917 * 101.57980 * 206.13887 * 13 11 2 15 15 N 1.47422 * 104.83171 * 37.00836 * 14 13 11 16 16 C 1.34779 * 125.64825 * 155.90436 * 15 14 13 17 17 O 1.21285 * 119.99982 * 179.97438 * 16 15 14 18 18 C 1.50694 * 120.00017 * 359.97438 * 16 15 14 19 19 O 1.42893 * 109.47406 * 179.97438 * 18 16 15 20 20 C 1.35897 * 117.00192 * 180.02562 * 19 18 16 21 21 C 1.38707 * 120.03140 * 359.72510 * 20 19 18 22 22 C 1.38383 * 119.97082 * 179.67590 * 21 20 19 23 23 F 1.35097 * 119.98389 * 180.34454 * 22 21 20 24 24 C 1.38456 * 120.02818 * 0.62295 * 22 21 20 25 25 C 1.38461 * 120.06119 * 359.67179 * 24 22 21 26 26 F 1.35100 * 119.98670 * 180.02562 * 25 24 22 27 27 C 1.38383 * 120.02853 * 0.02562 * 25 24 22 28 28 C 1.47324 * 108.73724 * 335.71971 * 15 14 13 29 29 H 1.09002 * 109.47344 * 84.82370 * 1 2 3 30 30 H 1.08999 * 109.46918 * 204.82952 * 1 2 3 31 31 H 1.09003 * 109.47088 * 324.82665 * 1 2 3 32 32 H 0.96997 * 120.00212 * 180.02562 * 6 5 3 33 33 H 1.09000 * 111.00797 * 324.20976 * 13 11 2 34 34 H 1.08996 * 111.00351 * 88.06908 * 13 11 2 35 35 H 1.08989 * 110.36875 * 155.84905 * 14 13 11 36 36 H 1.08999 * 110.36233 * 278.06379 * 14 13 11 37 37 H 1.08997 * 109.47260 * 300.00125 * 18 16 15 38 38 H 1.09003 * 109.47265 * 59.99621 * 18 16 15 39 39 H 1.08000 * 120.00889 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.97225 * 179.70045 * 24 22 21 41 41 H 1.07997 * 120.01508 * 180.02562 * 27 25 24 42 42 H 1.09000 * 110.06242 * 241.86813 * 28 15 14 43 43 H 1.09004 * 109.85060 * 120.60850 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1786 1.2154 0.3269 5 6 1.5230 2.3491 -0.4255 6 7 0.3897 2.2805 -1.0913 7 14 2.2882 4.0121 -0.0531 8 1 3.1124 4.4477 -1.2090 9 1 1.2138 5.0076 0.1920 10 1 3.1465 3.9030 1.1538 11 6 2.1976 -1.2687 -0.0006 12 1 3.2729 -1.0915 0.0120 13 6 1.7978 -2.1328 -1.2257 14 6 2.0902 -3.5627 -0.7063 15 7 1.7031 -3.5342 0.7159 16 6 1.3467 -4.6037 1.4546 17 8 1.0466 -4.4622 2.6212 18 6 1.3210 -5.9754 0.8311 19 8 0.9154 -6.9355 1.8085 20 6 0.8404 -8.2314 1.4064 21 6 1.1455 -8.5706 0.0965 22 6 1.0753 -9.8916 -0.3098 23 9 1.3791 -10.2231 -1.5837 24 6 0.6882 -10.8727 0.5871 25 6 0.3775 -10.5348 1.8934 26 9 0.0004 -11.4935 2.7674 27 6 0.4529 -9.2154 2.3040 28 6 1.7744 -2.1439 1.1980 29 1 -0.3634 0.0927 -1.0235 30 1 -0.3633 -0.9327 0.4315 31 1 -0.3633 0.8401 0.5920 32 1 -0.0480 3.0933 -1.3889 33 1 0.7405 -2.0114 -1.4612 34 1 2.4186 -1.8965 -2.0898 35 1 1.4898 -4.2933 -1.2483 36 1 3.1505 -3.7937 -0.8080 37 1 0.6167 -5.9833 -0.0007 38 1 2.3168 -6.2273 0.4662 39 1 1.4424 -7.8047 -0.6046 40 1 0.6290 -11.9027 0.2677 41 1 0.2109 -8.9521 3.3231 42 1 2.5127 -2.0621 1.9956 43 1 0.7966 -1.8274 1.5612 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980501579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:29 Heat of formation + Delta-G solvation = -112.576868 kcal Electronic energy + Delta-G solvation = -28622.110879 eV Core-core repulsion = 24111.513216 eV Total energy + Delta-G solvation = -4510.597663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.12048 -50.08321 -41.64618 -40.73630 -39.00326 -38.02754 -36.56599 -33.55966 -31.97337 -31.41366 -31.21205 -30.12340 -28.55054 -28.06181 -25.26469 -24.11502 -23.92374 -23.53798 -20.99427 -20.49589 -20.05087 -18.95509 -18.57401 -18.15866 -17.82347 -17.45701 -17.30094 -17.27305 -16.92901 -16.77164 -16.38970 -16.37812 -16.10312 -15.53847 -15.39891 -15.08319 -15.00111 -14.69201 -14.44238 -14.16399 -13.71322 -13.39385 -13.29229 -13.14425 -12.96523 -12.95651 -12.86810 -12.77244 -12.52740 -12.39683 -12.24400 -12.07920 -11.99044 -11.81725 -11.46787 -11.03196 -10.63500 -9.95229 -9.72745 -9.57957 -8.83905 -7.84530 -5.30496 -0.18966 -0.03905 1.24520 1.43786 1.47087 1.49925 1.58486 2.23930 2.26333 2.51725 2.83015 3.18483 3.28910 3.38289 3.56717 3.70895 3.73883 3.81541 3.84336 3.97375 4.00418 4.04500 4.10414 4.29166 4.35413 4.47563 4.67234 4.70662 4.75468 4.77946 4.90379 4.92321 4.94321 5.00501 5.11454 5.25179 5.34526 5.41365 5.47270 5.63781 5.69879 6.03464 6.29991 6.44480 6.99331 7.12836 7.83976 8.27292 9.19354 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028996 B = 0.001921 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.418184 B =14569.653813 C =15119.786105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.604 5.604 3 C -0.264 4.264 4 H 0.077 0.923 5 C -0.052 4.052 6 N -0.936 5.936 7 Si 0.967 3.033 8 H -0.284 1.284 9 H -0.297 1.297 10 H -0.271 1.271 11 C 0.164 3.836 12 H 0.086 0.914 13 C -0.144 4.144 14 C 0.101 3.899 15 N -0.607 5.607 16 C 0.522 3.478 17 O -0.579 6.579 18 C 0.047 3.953 19 O -0.305 6.305 20 C 0.183 3.817 21 C -0.248 4.248 22 C 0.168 3.832 23 F -0.127 7.127 24 C -0.225 4.225 25 C 0.166 3.834 26 F -0.129 7.129 27 C -0.205 4.205 28 C 0.099 3.901 29 H 0.011 0.989 30 H 0.022 0.978 31 H 0.011 0.989 32 H 0.248 0.752 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.175 0.825 40 H 0.167 0.833 41 H 0.151 0.849 42 H 0.057 0.943 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.411 -26.897 -1.896 27.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.325 5.325 3 C -0.394 4.394 4 H 0.094 0.906 5 C -0.248 4.248 6 N -0.583 5.583 7 Si 0.795 3.205 8 H -0.210 1.210 9 H -0.224 1.224 10 H -0.196 1.196 11 C 0.056 3.944 12 H 0.104 0.896 13 C -0.184 4.184 14 C -0.020 4.020 15 N -0.342 5.342 16 C 0.310 3.690 17 O -0.459 6.459 18 C -0.030 4.030 19 O -0.217 6.217 20 C 0.137 3.863 21 C -0.268 4.268 22 C 0.149 3.851 23 F -0.105 7.105 24 C -0.244 4.244 25 C 0.146 3.854 26 F -0.107 7.107 27 C -0.225 4.225 28 C -0.026 4.026 29 H 0.030 0.970 30 H 0.041 0.959 31 H 0.030 0.970 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.193 0.807 40 H 0.184 0.816 41 H 0.168 0.832 42 H 0.076 0.924 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.090 -26.690 -1.119 26.891 hybrid contribution -0.087 1.273 0.155 1.285 sum 3.003 -25.417 -0.964 25.612 Atomic orbital electron populations 1.20450 0.82963 0.95282 0.97754 1.44065 1.01901 1.01194 1.85372 1.19573 0.97350 0.86025 1.36409 0.90568 1.25707 0.98540 1.01618 0.98889 1.70231 1.20180 1.27231 1.40611 0.85269 0.77195 0.79939 0.78087 1.21035 1.22398 1.19613 1.21506 0.96228 0.84629 0.92066 0.89636 1.23232 1.02031 0.94106 0.99014 1.22692 1.02648 0.98144 0.78538 1.48490 1.66084 1.06254 1.13363 1.20304 0.76907 0.85996 0.85764 1.90742 1.50088 1.86308 1.18718 1.22741 1.05353 0.83943 0.90962 1.86165 1.82689 1.13883 1.38942 1.18263 0.93098 0.83247 0.91741 1.21443 1.11376 0.97281 0.96664 1.16890 0.96891 0.92280 0.79062 1.91562 1.90183 1.93136 1.35651 1.21091 1.08871 1.02307 0.92176 1.16772 0.97129 0.84620 0.86866 1.91551 1.88440 1.62363 1.68382 1.20435 1.09445 0.90201 1.02411 1.22489 1.00680 0.80752 0.98653 0.97047 0.95926 0.96969 0.94298 0.92324 0.89107 0.87144 0.87846 0.85223 0.84670 0.80728 0.81572 0.83163 0.92414 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.71 7.62 127.77 0.97 9.68 16 2 N -0.60 -28.44 2.94 -696.15 -2.04 -30.49 16 3 C -0.26 -13.77 9.63 84.03 0.81 -12.96 16 4 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 5 C -0.05 -2.84 5.07 84.86 0.43 -2.41 16 6 N -0.94 -53.83 10.67 21.65 0.23 -53.60 16 7 Si 0.97 43.94 29.58 68.60 2.03 45.97 16 8 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 9 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 11 C 0.16 5.83 3.43 46.18 0.16 5.99 16 12 H 0.09 2.94 7.92 -2.39 -0.02 2.92 16 13 C -0.14 -3.93 6.65 31.99 0.21 -3.72 16 14 C 0.10 1.78 6.69 86.86 0.58 2.36 16 15 N -0.61 -15.74 3.33 -811.03 -2.70 -18.45 16 16 C 0.52 14.10 7.93 87.65 0.69 14.79 16 17 O -0.58 -22.10 16.83 15.99 0.27 -21.84 16 18 C 0.05 0.75 4.23 71.23 0.30 1.05 16 19 O -0.30 -6.46 9.67 -73.35 -0.71 -7.17 16 20 C 0.18 3.05 6.68 22.50 0.15 3.20 16 21 C -0.25 -3.01 9.01 22.42 0.20 -2.81 16 22 C 0.17 2.17 7.30 22.36 0.16 2.34 16 23 F -0.13 -1.72 17.27 44.97 0.78 -0.95 16 24 C -0.22 -2.86 10.00 22.37 0.22 -2.64 16 25 C 0.17 2.53 7.30 22.36 0.16 2.69 16 26 F -0.13 -2.13 17.27 44.97 0.78 -1.35 16 27 C -0.21 -3.46 9.96 22.42 0.22 -3.24 16 28 C 0.10 3.37 6.41 86.67 0.56 3.92 16 29 H 0.01 0.59 7.39 -2.39 -0.02 0.57 16 30 H 0.02 0.97 6.35 -2.39 -0.02 0.95 16 31 H 0.01 0.63 7.23 -2.39 -0.02 0.61 16 32 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 33 H 0.06 1.85 7.24 -2.39 -0.02 1.83 16 34 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.11 1.13 7.48 -2.39 -0.02 1.12 16 36 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.13 1.23 7.35 -2.39 -0.02 1.21 16 38 H 0.14 1.12 7.67 -2.39 -0.02 1.11 16 39 H 0.18 1.12 6.29 -2.91 -0.02 1.10 16 40 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 41 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 42 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.05 1.85 6.19 -2.39 -0.01 1.83 16 Total: -1.00 -71.55 364.58 5.52 -66.03 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.05 Total: 3.60 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 5.84 Total: 18.24 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -4.52 Total: -102.53 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.44 Total: -29.01 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 1.55 Total: -2.30 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -71.55 5.52 -66.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980501579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.549 kcal (2) G-P(sol) polarization free energy of solvation -71.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds