Wall clock time and date at job start Sat Apr 11 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 119.99785 * 2 1 4 4 H 1.08005 * 120.00247 * 203.39699 * 3 2 1 5 5 C 1.38808 * 119.99992 * 23.40669 * 3 2 1 6 6 N 1.31623 * 120.00217 * 14.27987 * 5 3 2 7 7 Si 1.86800 * 120.00106 * 194.28517 * 5 3 2 8 8 H 1.48494 * 109.47151 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47338 * 120.00131 * 7 5 3 10 10 H 1.48504 * 109.47246 * 239.99873 * 7 5 3 11 11 C 1.46501 * 120.00499 * 180.02562 * 2 1 3 12 12 H 1.08997 * 110.89094 * 179.29695 * 11 2 1 13 13 C 1.55157 * 111.00305 * 303.17973 * 11 2 1 14 14 C 1.54316 * 102.94292 * 153.57492 * 13 11 2 15 15 N 1.47019 * 107.27426 * 337.80460 * 14 13 11 16 16 C 1.34777 * 125.65182 * 178.91117 * 15 14 13 17 17 O 1.21280 * 120.00190 * 180.02562 * 16 15 14 18 18 C 1.50701 * 119.99809 * 0.02562 * 16 15 14 19 19 O 1.42898 * 109.47150 * 180.02562 * 18 16 15 20 20 C 1.35942 * 117.00081 * 179.97438 * 19 18 16 21 21 C 1.38725 * 120.01969 * 359.73018 * 20 19 18 22 22 C 1.38168 * 120.01089 * 179.78670 * 21 20 19 23 23 C 1.38408 * 120.05608 * 0.46150 * 22 21 20 24 24 F 1.35105 * 119.97956 * 179.76352 * 23 22 21 25 25 C 1.38646 * 120.03976 * 359.79419 * 23 22 21 26 26 F 1.35094 * 120.00804 * 179.97438 * 25 23 22 27 27 C 1.38363 * 119.98408 * 359.97141 * 25 23 22 28 28 C 1.47469 * 108.71951 * 358.97563 * 15 14 13 29 29 H 1.08994 * 109.47010 * 275.17163 * 1 2 3 30 30 H 1.08994 * 109.47559 * 35.17765 * 1 2 3 31 31 H 1.09000 * 109.46707 * 155.17707 * 1 2 3 32 32 H 0.97000 * 120.00147 * 179.97438 * 6 5 3 33 33 H 1.08996 * 110.71974 * 271.93894 * 13 11 2 34 34 H 1.09003 * 110.71985 * 35.03219 * 13 11 2 35 35 H 1.08994 * 109.88348 * 97.22934 * 14 13 11 36 36 H 1.09003 * 109.88061 * 218.23553 * 14 13 11 37 37 H 1.08997 * 109.47264 * 300.00629 * 18 16 15 38 38 H 1.09006 * 109.46965 * 60.00778 * 18 16 15 39 39 H 1.07999 * 119.99568 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.97192 * 180.23008 * 22 21 20 41 41 H 1.08002 * 120.02317 * 179.97438 * 27 25 23 42 42 H 1.09001 * 110.35190 * 265.24910 * 28 15 14 43 43 H 1.09006 * 110.40537 * 142.91798 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1631 1.2245 -0.3714 5 6 1.5412 2.3386 0.4775 6 7 0.4322 2.2542 1.1814 7 14 2.2963 4.0096 0.1212 8 1 3.5320 3.8331 -0.6831 9 1 1.3260 4.8398 -0.6369 10 1 2.6313 4.6845 1.4009 11 6 2.1976 -1.2687 -0.0006 12 1 3.2737 -1.0961 -0.0130 13 6 1.7892 -2.1472 1.2114 14 6 2.0707 -3.5794 0.7105 15 7 2.0613 -3.5377 -0.7591 16 6 2.2881 -4.5853 -1.5762 17 8 2.2556 -4.4343 -2.7791 18 6 2.5820 -5.9443 -0.9950 19 8 2.7855 -6.8815 -2.0543 20 6 3.0634 -8.1639 -1.6990 21 6 3.1440 -8.5106 -0.3582 22 6 3.4222 -9.8149 0.0029 23 6 3.6302 -10.7748 -0.9724 24 9 3.9068 -12.0488 -0.6176 25 6 3.5554 -10.4297 -2.3131 26 9 3.7590 -11.3670 -3.2644 27 6 3.2721 -9.1250 -2.6765 28 6 1.7643 -2.1595 -1.1915 29 1 -0.3633 0.0926 1.0234 30 1 -0.3634 0.8399 -0.5920 31 1 -0.3633 -0.9327 -0.4314 32 1 0.0072 3.0596 1.5154 33 1 2.4042 -1.9149 2.0807 34 1 0.7320 -2.0175 1.4429 35 1 3.0461 -3.9114 1.0658 36 1 1.2956 -4.2566 1.0693 37 1 3.4806 -5.8902 -0.3806 38 1 1.7409 -6.2665 -0.3810 39 1 2.9863 -7.7615 0.4036 40 1 3.4812 -10.0849 1.0469 41 1 3.2141 -8.8553 -3.7207 42 1 0.6976 -2.0439 -1.3834 43 1 2.3401 -1.9083 -2.0824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980550744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:41 Heat of formation + Delta-G solvation = -95.338838 kcal Electronic energy + Delta-G solvation = -28480.752670 eV Core-core repulsion = 23970.902504 eV Total energy + Delta-G solvation = -4509.850166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.83574 -48.89946 -40.83612 -39.72842 -37.88184 -37.10126 -34.93749 -31.98789 -31.58053 -30.31717 -29.91957 -28.99432 -27.35865 -26.13839 -24.06815 -23.64433 -22.69244 -22.39458 -19.57989 -19.40834 -19.19202 -17.92240 -17.76801 -17.22785 -17.17388 -16.90108 -16.52692 -16.18152 -15.87355 -15.50705 -15.31533 -14.88654 -14.66153 -14.49474 -14.32424 -14.01399 -13.53232 -13.48329 -13.26167 -12.89277 -12.83873 -12.60302 -12.57591 -12.36982 -12.03356 -11.65509 -11.47983 -11.33358 -11.05037 -10.86625 -10.61050 -10.56998 -10.31867 -9.99374 -9.97249 -9.82552 -9.58095 -8.70436 -8.68690 -8.54514 -6.89699 -5.84733 -3.32655 0.40847 0.54368 2.11703 2.49231 2.85257 3.17417 3.31602 3.39927 3.41605 3.47484 3.92124 4.03725 4.24727 4.29099 4.39453 4.54670 4.60456 4.63749 4.72496 4.86564 5.14101 5.20799 5.26435 5.34407 5.36841 5.41963 5.46266 5.57964 5.61287 5.77501 5.87657 6.07810 6.14409 6.24631 6.34625 6.50718 6.67681 6.72429 6.76250 7.23874 7.50983 7.60455 7.71010 8.07778 8.26908 9.09959 9.72196 10.20289 11.19772 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.035189 B = 0.001793 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.506919 B =15614.410113 C =15970.376559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.584 5.584 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.006 3.994 6 N -0.903 5.903 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.288 1.288 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.080 0.920 13 C -0.152 4.152 14 C 0.096 3.904 15 N -0.609 5.609 16 C 0.527 3.473 17 O -0.522 6.522 18 C 0.043 3.957 19 O -0.280 6.280 20 C 0.157 3.843 21 C -0.193 4.193 22 C -0.081 4.081 23 C 0.025 3.975 24 F -0.131 7.131 25 C 0.111 3.889 26 F -0.122 7.122 27 C -0.160 4.160 28 C 0.087 3.913 29 H 0.035 0.965 30 H 0.042 0.958 31 H 0.003 0.997 32 H 0.253 0.747 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.072 0.928 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.415 -23.435 0.827 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.304 5.304 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.547 5.547 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.062 3.938 12 H 0.098 0.902 13 C -0.192 4.192 14 C -0.027 4.027 15 N -0.345 5.345 16 C 0.313 3.687 17 O -0.398 6.398 18 C -0.035 4.035 19 O -0.191 6.191 20 C 0.110 3.890 21 C -0.212 4.212 22 C -0.099 4.099 23 C 0.005 3.995 24 F -0.109 7.109 25 C 0.091 3.909 26 F -0.100 7.100 27 C -0.180 4.180 28 C -0.037 4.037 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.022 0.978 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.165 0.835 40 H 0.169 0.831 41 H 0.175 0.825 42 H 0.090 0.910 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.285 -23.220 -0.030 23.612 hybrid contribution 0.324 0.496 0.183 0.620 sum 4.608 -22.725 0.153 23.188 Atomic orbital electron populations 1.20840 0.82439 0.95744 0.99750 1.43820 1.01865 0.99837 1.84909 1.19247 0.98830 0.85231 1.35826 0.91155 1.25034 0.97960 0.98669 0.97676 1.70073 1.20421 1.27413 1.36809 0.86169 0.78594 0.84065 0.77598 1.20201 1.21508 1.21680 1.21415 0.96493 0.85866 0.89982 0.90219 1.23244 1.03186 0.92004 1.00759 1.22173 1.00830 1.00123 0.79562 1.48371 1.69307 1.09481 1.07299 1.19429 0.78314 0.84339 0.86599 1.90764 1.50750 1.84139 1.14140 1.22602 1.03389 0.87888 0.89630 1.86200 1.84207 1.15029 1.33696 1.18655 0.93844 0.84319 0.92181 1.21250 1.07278 0.97513 0.95180 1.20858 0.97897 0.91493 0.99691 1.17531 1.09547 0.80914 0.91519 1.91529 1.91663 1.35419 1.92317 1.17220 1.02786 0.86633 0.84258 1.91557 1.92240 1.63451 1.62801 1.20192 1.06883 0.89430 1.01462 1.23081 1.01480 0.78709 1.00432 0.94688 0.93948 0.97825 0.93646 0.90301 0.90353 0.91624 0.91808 0.88516 0.88564 0.83480 0.83134 0.82513 0.90951 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.55 7.74 59.85 0.46 4.02 16 2 N -0.58 -13.44 2.96 -171.04 -0.51 -13.94 16 3 C -0.26 -6.77 9.60 -15.06 -0.14 -6.91 16 4 H 0.07 1.79 7.86 -52.48 -0.41 1.37 16 5 C 0.01 0.15 5.07 -17.43 -0.09 0.06 16 6 N -0.90 -25.01 10.81 55.49 0.60 -24.41 16 7 Si 0.91 21.00 29.58 -169.99 -5.03 15.97 16 8 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 C 0.17 3.15 3.54 -65.78 -0.23 2.92 16 12 H 0.08 1.46 7.95 -51.93 -0.41 1.05 16 13 C -0.15 -2.22 6.53 -24.90 -0.16 -2.38 16 14 C 0.10 1.04 6.49 -3.07 -0.02 1.02 16 15 N -0.61 -8.40 3.33 -170.49 -0.57 -8.96 16 16 C 0.53 7.41 7.93 -10.98 -0.09 7.32 16 17 O -0.52 -9.73 16.76 -14.35 -0.24 -9.97 16 18 C 0.04 0.40 4.41 36.01 0.16 0.56 16 19 O -0.28 -3.14 9.67 -39.47 -0.38 -3.52 16 20 C 0.16 1.41 6.68 -39.24 -0.26 1.15 16 21 C -0.19 -1.27 9.04 -39.43 -0.36 -1.62 16 22 C -0.08 -0.52 10.02 -39.54 -0.40 -0.92 16 23 C 0.03 0.22 7.30 -39.37 -0.29 -0.07 16 24 F -0.13 -1.27 17.18 2.25 0.04 -1.23 16 25 C 0.11 1.04 7.30 -39.38 -0.29 0.75 16 26 F -0.12 -1.26 17.18 2.25 0.04 -1.22 16 27 C -0.16 -1.45 9.96 -39.38 -0.39 -1.84 16 28 C 0.09 1.46 6.45 -2.50 -0.02 1.45 16 29 H 0.03 0.86 7.32 -51.93 -0.38 0.48 16 30 H 0.04 1.05 7.40 -51.93 -0.38 0.67 16 31 H 0.00 0.07 6.15 -51.93 -0.32 -0.25 16 32 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.24 7.21 -51.93 -0.37 0.87 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.63 7.65 -51.93 -0.40 0.23 16 38 H 0.10 0.62 7.67 -51.93 -0.40 0.22 16 39 H 0.15 0.59 6.29 -52.49 -0.33 0.26 16 40 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.07 1.29 6.14 -51.93 -0.32 0.98 16 43 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 LS Contribution 365.38 15.07 5.51 5.51 Total: -1.00 -31.52 365.38 -8.05 -39.57 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -5.39 Total: -3.29 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -2.11 Total: 5.50 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.47 Total: -47.31 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.62 Total: -13.49 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.08 Total: -2.45 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.52 -8.05 -39.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980550744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.770 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds