Wall clock time and date at job start Sat Apr 11 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 119.99785 * 2 1 4 4 H 1.08005 * 120.00247 * 203.39699 * 3 2 1 5 5 C 1.38808 * 119.99992 * 23.40669 * 3 2 1 6 6 N 1.31623 * 120.00217 * 14.27987 * 5 3 2 7 7 Si 1.86800 * 120.00106 * 194.28517 * 5 3 2 8 8 H 1.48494 * 109.47151 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47338 * 120.00131 * 7 5 3 10 10 H 1.48504 * 109.47246 * 239.99873 * 7 5 3 11 11 C 1.46501 * 120.00499 * 180.02562 * 2 1 3 12 12 H 1.08997 * 110.89094 * 179.29695 * 11 2 1 13 13 C 1.55157 * 111.00305 * 303.17973 * 11 2 1 14 14 C 1.54316 * 102.94292 * 153.57492 * 13 11 2 15 15 N 1.47019 * 107.27426 * 337.80460 * 14 13 11 16 16 C 1.34777 * 125.65182 * 178.91117 * 15 14 13 17 17 O 1.21280 * 120.00190 * 180.02562 * 16 15 14 18 18 C 1.50701 * 119.99809 * 0.02562 * 16 15 14 19 19 O 1.42898 * 109.47150 * 180.02562 * 18 16 15 20 20 C 1.35942 * 117.00081 * 179.97438 * 19 18 16 21 21 C 1.38725 * 120.01969 * 359.73018 * 20 19 18 22 22 C 1.38168 * 120.01089 * 179.78670 * 21 20 19 23 23 C 1.38408 * 120.05608 * 0.46150 * 22 21 20 24 24 F 1.35105 * 119.97956 * 179.76352 * 23 22 21 25 25 C 1.38646 * 120.03976 * 359.79419 * 23 22 21 26 26 F 1.35094 * 120.00804 * 179.97438 * 25 23 22 27 27 C 1.38363 * 119.98408 * 359.97141 * 25 23 22 28 28 C 1.47469 * 108.71951 * 358.97563 * 15 14 13 29 29 H 1.08994 * 109.47010 * 275.17163 * 1 2 3 30 30 H 1.08994 * 109.47559 * 35.17765 * 1 2 3 31 31 H 1.09000 * 109.46707 * 155.17707 * 1 2 3 32 32 H 0.97000 * 120.00147 * 179.97438 * 6 5 3 33 33 H 1.08996 * 110.71974 * 271.93894 * 13 11 2 34 34 H 1.09003 * 110.71985 * 35.03219 * 13 11 2 35 35 H 1.08994 * 109.88348 * 97.22934 * 14 13 11 36 36 H 1.09003 * 109.88061 * 218.23553 * 14 13 11 37 37 H 1.08997 * 109.47264 * 300.00629 * 18 16 15 38 38 H 1.09006 * 109.46965 * 60.00778 * 18 16 15 39 39 H 1.07999 * 119.99568 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.97192 * 180.23008 * 22 21 20 41 41 H 1.08002 * 120.02317 * 179.97438 * 27 25 23 42 42 H 1.09001 * 110.35190 * 265.24910 * 28 15 14 43 43 H 1.09006 * 110.40537 * 142.91798 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1631 1.2245 -0.3714 5 6 1.5412 2.3386 0.4775 6 7 0.4322 2.2542 1.1814 7 14 2.2963 4.0096 0.1212 8 1 3.5320 3.8331 -0.6831 9 1 1.3260 4.8398 -0.6369 10 1 2.6313 4.6845 1.4009 11 6 2.1976 -1.2687 -0.0006 12 1 3.2737 -1.0961 -0.0130 13 6 1.7892 -2.1472 1.2114 14 6 2.0707 -3.5794 0.7105 15 7 2.0613 -3.5377 -0.7591 16 6 2.2881 -4.5853 -1.5762 17 8 2.2556 -4.4343 -2.7791 18 6 2.5820 -5.9443 -0.9950 19 8 2.7855 -6.8815 -2.0543 20 6 3.0634 -8.1639 -1.6990 21 6 3.1440 -8.5106 -0.3582 22 6 3.4222 -9.8149 0.0029 23 6 3.6302 -10.7748 -0.9724 24 9 3.9068 -12.0488 -0.6176 25 6 3.5554 -10.4297 -2.3131 26 9 3.7590 -11.3670 -3.2644 27 6 3.2721 -9.1250 -2.6765 28 6 1.7643 -2.1595 -1.1915 29 1 -0.3633 0.0926 1.0234 30 1 -0.3634 0.8399 -0.5920 31 1 -0.3633 -0.9327 -0.4314 32 1 0.0072 3.0596 1.5154 33 1 2.4042 -1.9149 2.0807 34 1 0.7320 -2.0175 1.4429 35 1 3.0461 -3.9114 1.0658 36 1 1.2956 -4.2566 1.0693 37 1 3.4806 -5.8902 -0.3806 38 1 1.7409 -6.2665 -0.3810 39 1 2.9863 -7.7615 0.4036 40 1 3.4812 -10.0849 1.0469 41 1 3.2141 -8.8553 -3.7207 42 1 0.6976 -2.0439 -1.3834 43 1 2.3401 -1.9083 -2.0824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980550744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:40 Heat of formation + Delta-G solvation = -113.549626 kcal Electronic energy + Delta-G solvation = -28481.542349 eV Core-core repulsion = 23970.902504 eV Total energy + Delta-G solvation = -4510.639845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -50.53129 -49.59551 -41.61458 -40.73041 -38.98526 -37.99608 -36.55869 -33.55943 -32.28196 -31.50960 -30.81327 -29.95777 -28.47227 -28.04328 -25.27118 -24.45008 -23.83254 -23.31405 -20.98741 -20.47565 -19.85523 -18.95246 -18.59320 -18.51487 -18.04497 -17.78910 -17.42344 -17.09010 -16.94761 -16.62866 -16.17232 -16.02696 -15.54631 -15.52056 -15.08307 -15.02920 -15.00351 -14.76267 -14.38559 -14.23514 -13.82677 -13.76856 -13.48742 -13.30002 -13.19165 -12.93280 -12.85477 -12.51878 -12.37025 -12.25697 -12.11724 -12.05956 -11.94472 -11.83377 -11.40623 -10.98916 -10.65240 -10.16478 -9.70676 -9.32659 -8.78289 -7.84320 -5.33122 -0.17593 -0.03988 1.29913 1.46090 1.47581 1.49598 1.58400 2.28295 2.30595 2.51779 2.85390 3.25603 3.31867 3.33688 3.56153 3.58994 3.75580 3.93261 3.95820 4.03310 4.06230 4.09539 4.18869 4.24924 4.37480 4.47053 4.71600 4.72107 4.79933 4.80567 4.92009 4.92584 5.02240 5.03982 5.14702 5.25681 5.35110 5.44118 5.49357 5.65568 5.72093 6.10674 6.31922 6.48237 7.02985 7.13787 7.84394 8.27654 9.18320 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.035189 B = 0.001793 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.506919 B =15614.410113 C =15970.376559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.602 5.602 3 C -0.265 4.265 4 H 0.070 0.930 5 C -0.048 4.048 6 N -0.932 5.932 7 Si 0.964 3.036 8 H -0.268 1.268 9 H -0.294 1.294 10 H -0.290 1.290 11 C 0.164 3.836 12 H 0.075 0.925 13 C -0.143 4.143 14 C 0.102 3.898 15 N -0.607 5.607 16 C 0.521 3.479 17 O -0.581 6.581 18 C 0.048 3.952 19 O -0.311 6.311 20 C 0.147 3.853 21 C -0.176 4.176 22 C -0.068 4.068 23 C 0.012 3.988 24 F -0.140 7.140 25 C 0.093 3.907 26 F -0.136 7.136 27 C -0.173 4.173 28 C 0.097 3.903 29 H 0.014 0.986 30 H 0.009 0.991 31 H 0.031 0.969 32 H 0.249 0.751 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.186 0.814 40 H 0.184 0.816 41 H 0.151 0.849 42 H 0.059 0.941 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.315 -25.222 3.208 25.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.323 5.323 3 C -0.395 4.395 4 H 0.088 0.912 5 C -0.243 4.243 6 N -0.578 5.578 7 Si 0.793 3.207 8 H -0.193 1.193 9 H -0.221 1.221 10 H -0.217 1.217 11 C 0.055 3.945 12 H 0.094 0.906 13 C -0.183 4.183 14 C -0.019 4.019 15 N -0.342 5.342 16 C 0.310 3.690 17 O -0.461 6.461 18 C -0.029 4.029 19 O -0.223 6.223 20 C 0.101 3.899 21 C -0.194 4.194 22 C -0.086 4.086 23 C -0.008 4.008 24 F -0.119 7.119 25 C 0.073 3.927 26 F -0.114 7.114 27 C -0.192 4.192 28 C -0.028 4.028 29 H 0.032 0.968 30 H 0.028 0.972 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.203 0.797 40 H 0.201 0.799 41 H 0.168 0.832 42 H 0.077 0.923 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.213 -25.060 2.377 25.707 hybrid contribution 0.069 1.005 -0.600 1.172 sum 5.282 -24.055 1.778 24.692 Atomic orbital electron populations 1.20528 0.82721 0.95718 0.98008 1.43969 1.02011 1.00969 1.85378 1.19530 0.98814 0.86639 1.34547 0.91203 1.25711 0.98730 1.01618 0.98283 1.70206 1.21724 1.27657 1.38238 0.85250 0.77907 0.80361 0.77176 1.19290 1.22140 1.21721 1.21565 0.95797 0.84722 0.92381 0.90647 1.23067 1.02353 0.93782 0.99109 1.22376 1.04486 0.97964 0.77095 1.48387 1.68974 1.08041 1.08785 1.20381 0.76764 0.85949 0.85879 1.90744 1.53248 1.85219 1.16883 1.22753 1.06706 0.84408 0.89026 1.86151 1.84811 1.16068 1.35315 1.18745 0.94565 0.83354 0.93256 1.21620 1.05038 0.98184 0.94569 1.21227 0.96017 0.90767 1.00633 1.17843 1.10124 0.81111 0.91717 1.91503 1.91844 1.36246 1.92323 1.17395 1.04118 0.86615 0.84595 1.91514 1.92542 1.63936 1.63444 1.20220 1.07555 0.89700 1.01725 1.22641 1.00103 0.81022 0.99020 0.96752 0.97203 0.95016 0.94202 0.89600 0.91730 0.87635 0.87967 0.84574 0.84626 0.79666 0.79889 0.83173 0.92316 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.10 7.74 127.77 0.99 9.09 16 2 N -0.60 -27.94 2.96 -695.04 -2.05 -29.99 16 3 C -0.27 -13.85 9.60 84.03 0.81 -13.04 16 4 H 0.07 3.57 7.86 -2.91 -0.02 3.55 16 5 C -0.05 -2.57 5.07 84.86 0.43 -2.14 16 6 N -0.93 -52.79 10.81 21.65 0.23 -52.56 16 7 Si 0.96 43.74 29.58 68.60 2.03 45.77 16 8 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 9 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 C 0.16 5.82 3.54 46.38 0.16 5.98 16 12 H 0.08 2.71 7.95 -2.39 -0.02 2.69 16 13 C -0.14 -3.78 6.53 31.78 0.21 -3.57 16 14 C 0.10 1.67 6.49 86.73 0.56 2.23 16 15 N -0.61 -14.93 3.33 -811.70 -2.70 -17.63 16 16 C 0.52 13.28 7.93 87.66 0.69 13.98 16 17 O -0.58 -21.56 16.76 16.01 0.27 -21.29 16 18 C 0.05 0.65 4.41 71.24 0.31 0.96 16 19 O -0.31 -6.13 9.67 -73.86 -0.71 -6.84 16 20 C 0.15 2.22 6.68 22.49 0.15 2.37 16 21 C -0.18 -1.40 9.04 22.37 0.20 -1.19 16 22 C -0.07 -0.59 10.02 22.29 0.22 -0.36 16 23 C 0.01 0.19 7.30 22.41 0.16 0.35 16 24 F -0.14 -2.55 17.18 44.97 0.77 -1.78 16 25 C 0.09 1.69 7.30 22.40 0.16 1.86 16 26 F -0.14 -2.89 17.18 44.97 0.77 -2.11 16 27 C -0.17 -3.02 9.96 22.40 0.22 -2.80 16 28 C 0.10 3.23 6.45 86.85 0.56 3.79 16 29 H 0.01 0.71 7.32 -2.39 -0.02 0.70 16 30 H 0.01 0.48 7.40 -2.39 -0.02 0.46 16 31 H 0.03 1.25 6.15 -2.39 -0.01 1.24 16 32 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.06 1.91 7.21 -2.39 -0.02 1.89 16 35 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.14 0.79 7.65 -2.39 -0.02 0.77 16 38 H 0.14 0.79 7.67 -2.38 -0.02 0.78 16 39 H 0.19 0.02 6.29 -2.91 -0.02 0.00 16 40 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 41 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 42 H 0.06 2.10 6.14 -2.39 -0.01 2.08 16 43 H 0.05 1.96 8.04 -2.38 -0.02 1.94 16 Total: -1.00 -74.35 365.38 5.51 -68.84 By element: Atomic # 1 Polarization: -0.98 SS G_CDS: 1.05 Total: 0.07 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 5.86 Total: 17.52 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -4.52 Total: -100.18 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.45 Total: -28.13 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 1.55 Total: -3.89 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -74.35 5.51 -68.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980550744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.714 kcal (2) G-P(sol) polarization free energy of solvation -74.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds