Wall clock time and date at job start Sat Apr 11 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35705 * 116.99839 * 2 1 4 4 C 1.38819 * 120.14619 * 270.01624 * 3 2 1 5 5 F 1.35105 * 119.94246 * 0.02562 * 4 3 2 6 6 C 1.38271 * 120.11553 * 179.97438 * 4 3 2 7 7 C 1.38442 * 120.41047 * 359.97438 * 6 4 3 8 8 C 1.38090 * 120.28752 * 359.78439 * 7 6 4 9 9 F 1.35108 * 120.05997 * 180.23668 * 8 7 6 10 10 C 1.39990 * 119.87920 * 0.46768 * 8 7 6 11 11 C 1.47388 * 120.20019 * 179.79270 * 10 8 7 12 12 O 1.21608 * 119.99789 * 269.71745 * 11 10 8 13 13 N 1.34774 * 120.00433 * 89.72190 * 11 10 8 14 14 C 1.48214 * 119.96945 * 179.97438 * 13 11 10 15 15 C 1.47136 * 110.34051 * 102.50007 * 14 13 11 16 16 C 1.53854 * 111.83715 * 58.27604 * 15 14 13 17 17 N 1.43462 * 107.97464 * 281.68919 * 16 15 14 18 18 C 1.36943 * 118.94089 * 273.59813 * 17 16 15 19 19 H 1.07999 * 119.99566 * 25.93180 * 18 17 16 20 20 C 1.38807 * 119.99777 * 205.93686 * 18 17 16 21 21 N 1.31618 * 120.00385 * 13.79941 * 20 18 17 22 22 Si 1.86806 * 119.99728 * 193.80079 * 20 18 17 23 23 H 1.48501 * 109.47153 * 89.99930 * 22 20 18 24 24 H 1.48497 * 109.47030 * 209.99597 * 22 20 18 25 25 H 1.48498 * 109.47269 * 329.99849 * 22 20 18 26 26 C 1.48850 * 122.11888 * 93.61730 * 17 16 15 27 27 C 1.43628 * 119.96590 * 0.02562 * 13 11 10 28 28 H 1.09002 * 109.46892 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47213 * 300.00560 * 1 2 3 30 30 H 1.09005 * 109.46513 * 60.00328 * 1 2 3 31 31 H 1.08000 * 119.79134 * 179.97438 * 6 4 3 32 32 H 1.08004 * 119.85471 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.32430 * 222.75851 * 14 13 11 34 34 H 1.08998 * 109.32751 * 342.22823 * 14 13 11 35 35 H 1.09005 * 109.00802 * 178.90382 * 15 14 13 36 36 H 1.09001 * 109.00599 * 297.68653 * 15 14 13 37 37 H 1.09001 * 109.76456 * 162.06599 * 16 15 14 38 38 H 1.08997 * 109.78823 * 41.32995 * 16 15 14 39 39 H 0.97001 * 120.00546 * 180.02562 * 21 20 18 40 40 H 1.08998 * 109.47966 * 200.63567 * 26 17 16 41 41 H 1.09002 * 109.48816 * 80.61015 * 26 17 16 42 42 H 1.08998 * 108.87411 * 31.44024 * 27 13 11 43 43 H 1.09003 * 108.87083 * 149.88366 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 2.3613 1.8305 -1.2004 5 9 2.0547 1.2306 -2.3715 6 6 2.9885 3.0628 -1.1997 7 6 3.3057 3.6869 -0.0054 8 6 2.9944 3.0863 1.1985 9 9 3.3018 3.7018 2.3613 10 6 2.3642 1.8364 1.2119 11 6 2.0329 1.1868 2.4927 12 8 2.8346 0.4407 3.0214 13 7 0.8414 1.4196 3.0781 14 6 0.5088 0.7656 4.3659 15 6 0.6593 1.7181 5.4772 16 6 -0.2344 2.9569 5.2941 17 7 0.4000 3.8239 4.3433 18 6 1.3304 4.7258 4.7866 19 1 1.8835 4.5294 5.6931 20 6 1.5623 5.8922 4.0707 21 7 0.7187 6.2675 3.1328 22 14 3.0718 6.9293 4.4386 23 1 4.2022 6.4772 3.5883 24 1 2.7749 8.3554 4.1501 25 1 3.4383 6.7797 5.8699 26 6 0.0792 3.7751 2.8906 27 6 -0.1052 2.3005 2.4529 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 3.2325 3.5413 -2.1367 32 1 3.7960 4.6492 -0.0153 33 1 -0.5206 0.4086 4.3338 34 1 1.1768 -0.0812 4.5235 35 1 0.3911 1.2211 6.4095 36 1 1.7002 2.0367 5.5331 37 1 -0.3470 3.4743 6.2469 38 1 -1.2129 2.6542 4.9213 39 1 0.8809 7.0824 2.6322 40 1 0.8946 4.2236 2.3231 41 1 -0.8414 4.3277 2.7027 42 1 0.0139 2.2357 1.3713 43 1 -1.1130 1.9782 2.7148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981737590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:45 Heat of formation + Delta-G solvation = -85.926170 kcal Electronic energy + Delta-G solvation = -32722.778435 eV Core-core repulsion = 28213.336433 eV Total energy + Delta-G solvation = -4509.442002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.96614 -48.53095 -40.52457 -38.91279 -37.31166 -36.90671 -34.29004 -32.90686 -31.09292 -30.76248 -29.82882 -27.66071 -27.17129 -25.64528 -24.14466 -23.73519 -22.54629 -21.90265 -19.80288 -19.35874 -18.13680 -17.71517 -17.55977 -16.73613 -16.47494 -16.21491 -15.95008 -15.76123 -15.16878 -15.04579 -14.98482 -14.57106 -14.34435 -14.14521 -14.07196 -13.69874 -13.35142 -13.14761 -13.04149 -12.60487 -12.46424 -12.36997 -12.23223 -11.79892 -11.70343 -11.42292 -11.32369 -10.98825 -10.77896 -10.57217 -10.31978 -10.27535 -10.22629 -9.87011 -9.71436 -9.60773 -9.06261 -8.51699 -8.46028 -8.16521 -6.69922 -5.78872 -3.20884 0.68810 0.84792 2.79791 2.99714 3.30941 3.38265 3.44075 3.46912 3.47690 4.10980 4.29838 4.49482 4.53440 4.78409 4.89692 5.10100 5.13620 5.15597 5.23365 5.33192 5.48295 5.49939 5.59295 5.67560 5.73497 5.81307 5.87120 5.88104 5.94985 5.98021 6.08293 6.23537 6.40589 6.48342 6.52238 6.79289 6.82072 7.02169 7.19227 7.29909 7.42833 7.78432 7.82377 8.43277 8.45873 9.20837 9.88232 10.33090 11.29586 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011962 B = 0.006283 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.188127 B = 4455.547882 C = 5775.751566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.321 6.321 3 C 0.118 3.882 4 C 0.061 3.939 5 F -0.129 7.129 6 C -0.099 4.099 7 C -0.134 4.134 8 C 0.159 3.841 9 F -0.094 7.094 10 C -0.148 4.148 11 C 0.579 3.421 12 O -0.534 6.534 13 N -0.573 5.573 14 C 0.131 3.869 15 C -0.172 4.172 16 C 0.163 3.837 17 N -0.588 5.588 18 C -0.245 4.245 19 H 0.063 0.937 20 C 0.012 3.988 21 N -0.910 5.910 22 Si 0.891 3.109 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.280 1.280 26 C 0.164 3.836 27 C 0.073 3.927 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.033 0.967 39 H 0.252 0.748 40 H 0.080 0.920 41 H 0.042 0.958 42 H 0.059 0.941 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 -8.407 -8.434 12.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.237 6.237 3 C 0.072 3.928 4 C 0.041 3.959 5 F -0.108 7.108 6 C -0.117 4.117 7 C -0.153 4.153 8 C 0.138 3.862 9 F -0.072 7.072 10 C -0.153 4.153 11 C 0.365 3.635 12 O -0.411 6.411 13 N -0.304 5.304 14 C 0.010 3.990 15 C -0.213 4.213 16 C 0.034 3.966 17 N -0.309 5.309 18 C -0.375 4.375 19 H 0.080 0.920 20 C -0.185 4.185 21 N -0.555 5.555 22 Si 0.721 3.279 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.206 1.206 26 C 0.038 3.962 27 C -0.053 4.053 28 H 0.118 0.882 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.170 0.830 32 H 0.172 0.828 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.839 -8.839 -8.223 12.212 hybrid contribution 0.649 0.932 0.088 1.139 sum -1.190 -7.907 -8.135 11.407 Atomic orbital electron populations 1.23287 0.77942 1.04049 1.01593 1.86042 1.20598 1.23008 1.94052 1.18187 0.98202 0.86982 0.89425 1.17740 1.04323 0.93216 0.80657 1.91502 1.91312 1.83157 1.44796 1.20952 0.98102 0.93097 0.99594 1.21040 1.02521 1.01909 0.89789 1.17522 0.96198 0.89303 0.83176 1.91770 1.89473 1.81018 1.44916 1.20151 1.05104 0.95238 0.94801 1.17513 0.81966 0.80691 0.83362 1.90762 1.48117 1.37436 1.64775 1.47336 1.15625 1.44840 1.22562 1.20611 1.00046 0.95722 0.82632 1.21905 1.03971 0.99007 0.96402 1.20298 0.92656 0.89925 0.93712 1.43585 1.46173 1.40153 1.00982 1.19106 1.12614 0.96877 1.08882 0.91973 1.24859 0.97967 0.96344 0.99374 1.69988 1.34966 1.24199 1.26340 0.86455 0.83682 0.79462 0.78270 1.21151 1.21881 1.20569 1.21950 1.01130 0.87904 0.85197 1.22380 0.91959 0.94728 0.96201 0.88212 0.92301 0.92949 0.82986 0.82796 0.91788 0.90280 0.92421 0.91184 0.93443 0.94902 0.93821 0.90166 0.93995 0.92260 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.88 101.05 1.10 1.39 16 2 O -0.32 -5.01 9.73 -18.82 -0.18 -5.20 16 3 C 0.12 1.90 5.30 -38.65 -0.20 1.70 16 4 C 0.06 0.85 7.30 -39.35 -0.29 0.57 16 5 F -0.13 -1.75 17.11 2.25 0.04 -1.72 16 6 C -0.10 -1.21 10.00 -39.49 -0.40 -1.60 16 7 C -0.13 -1.92 10.00 -39.56 -0.40 -2.32 16 8 C 0.16 2.92 6.33 -38.98 -0.25 2.67 16 9 F -0.09 -2.09 16.19 2.25 0.04 -2.05 16 10 C -0.15 -2.71 3.92 -104.80 -0.41 -3.12 16 11 C 0.58 11.68 6.28 -12.54 -0.08 11.60 16 12 O -0.53 -12.29 16.54 5.27 0.09 -12.21 16 13 N -0.57 -10.41 2.36 -177.91 -0.42 -10.83 16 14 C 0.13 2.15 5.70 -5.91 -0.03 2.12 16 15 C -0.17 -3.04 5.64 -29.10 -0.16 -3.20 16 16 C 0.16 3.17 5.63 -5.20 -0.03 3.15 16 17 N -0.59 -13.62 2.54 -171.93 -0.44 -14.06 16 18 C -0.25 -6.43 9.27 -15.06 -0.14 -6.57 16 19 H 0.06 1.68 7.87 -52.49 -0.41 1.27 16 20 C 0.01 0.33 4.96 -17.43 -0.09 0.24 16 21 N -0.91 -24.64 10.91 55.49 0.61 -24.03 16 22 Si 0.89 21.56 29.58 -169.99 -5.03 16.53 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.16 3.56 5.17 -1.73 -0.01 3.55 16 27 C 0.07 1.25 3.80 -4.55 -0.02 1.23 16 28 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.72 5.14 -51.93 -0.27 0.45 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.15 1.91 8.06 -52.48 -0.42 1.49 16 33 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 34 H 0.08 1.34 7.12 -51.93 -0.37 0.97 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.49 7.91 -51.93 -0.41 1.08 16 37 H 0.05 0.95 8.02 -51.93 -0.42 0.53 16 38 H 0.03 0.58 7.59 -51.93 -0.39 0.19 16 39 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 40 H 0.08 1.92 4.86 -51.93 -0.25 1.67 16 41 H 0.04 0.98 7.99 -51.93 -0.41 0.56 16 42 H 0.06 0.94 4.89 -51.93 -0.25 0.69 16 43 H 0.07 0.99 7.73 -51.93 -0.40 0.59 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -31.50 352.51 -6.65 -38.15 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.26 Total: -1.30 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: -1.40 Total: 11.40 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.25 Total: -48.92 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.10 Total: -17.40 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.07 Total: -3.77 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.50 -6.65 -38.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981737590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.777 kcal (2) G-P(sol) polarization free energy of solvation -31.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds